Isolation and characterisation of a partial peptide synthetase gene from Trichoderma asperellum

FEMS Microbiology Letters

Volumn 252, Issue 2, 2005, Pages 257-265

  Chutrakul, Chanikul ^a,b   Peberdy, John F ^a  

^a UNIVERSITY OF NOTTINGHAM   (United Kingdom)

^b NATIONAL SCIENCE AND TECHNOLOGY DEVELOPMENT AGENCY   (Thailand)

Author keywords

Non ribosomal peptide; Peptide synthetase; Trichoderma asperellum

Indexed keywords

AMINO ACID; NUCLEOTIDE; PEPTIDE SYNTHASE;

ADENYLATION; AMINO ACID ANALYSIS; AMINO ACID METABOLISM; AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; DNA HYBRIDIZATION; DNA PROBE; ENZYME ISOLATION; GENE IDENTIFICATION; GENE LIBRARY; GENETIC CODE; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN DOMAIN; TRICHODERMA; TRICHODERMA ASPERELLUM;

CLONING, MOLECULAR; DNA, FUNGAL; FUNGAL PROTEINS; GENE LIBRARY; GENES, FUNGAL; MOLECULAR SEQUENCE DATA; PEPTIDE SYNTHASES; PEPTIDES; RESTRICTION MAPPING; SEQUENCE ANALYSIS, DNA; TRICHODERMA;

FUNGI; TRICHODERMA; TRICHODERMA ASPERELLUM; TRICHOTOXIN;

EID: 27444441470     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2005.09.009     Document Type: Article

References (35)

1. C.P. Kubicek, J. Bissett, I. Druzhinina, C. Kullnig-Gradinger, and G. Szakacs Genetic and metabolic diversity of Trichoderma: a case study on South-East Asian isolates Fung. Genet. Biol. 38 2003 310 319
2. G.J. Samuels, E. Lieckfeldt, and H.I. Nirenberg Trichoderma aperellum, a new species with warted conidia and redescription of T. viride Sydowia 51 1999 71 88
3. C.R. Thronton An immunological approach to quantifying the saprotrophic growth dynamics of Trichoderma species during antagonistic interactions with Rhizoctonia solani in a soil-less mix Environ Microbiol 6 2004 323 334
4. M. Shoresh, I. Yedida, and I. Chet Involvement of jasmonic acid/ethylene signaling pathway in the systemic resistance induced in cucumber by Trichoderma asperellum Phytopathology 95 2005 76 84
5. M.A. Marahiel Multidomain enzymes involved in peptide synthesis FEBS. Lett. 307 1992 40 43
6. M. Gocht, and M.A. Marahiel Analysis of core sequences in the d-Phe activating domain of the multifunctional peptide synthetase TycA by site-directed mutagenesis J. Bacteriol. 176 1994 2654 2662
7. A. Wiest, D. Grzegorski, B.W. Xu, C. Goulard, S. Rebuffat, D.J. Ebbole, B. Bodo, and C. Kenerley Identification of peptaibols from Trichoderma virens and cloning of a peptaibol synthetase J. Biol. Chem. 277 2002 20862 20868
8. S.E. Wilhite, R.D. Lumsden, and D.C. Straney Peptide synthetase gene in Trichoderma virens Appl. Environ. Microbiol. 67 2001 5055 5062
9. W.M. Yuan, G.D. Gentil, A. Budde, and S.A. Leong Characterization of the Ustilago maydis sid2 gene, encoding a multidomain peptide synthetase in the ferrichrome biosynthetic gene cluster J. Bacteriol. 183 2001 4040 4051
10. M. Glinski, C. Urbake, T. Hornbogen, and R. Zocher Enniatin synthetase is a monomer with extended structure: evidence for an intramolecular reaction mechanism Arch. Microbiol. 178 2002 267 273
11. T. Guillemette, A. Sellam, and P. Simoneau Analysis of a nonribosomal peptide synthetase gene from Altenaria brassica and flanking genomic sequences Curr. Genet. 45 2004 214 224
12. J.M. Baek, and C.M. Kenerley The arg2 gene of Trichoderma virens: cloning and development of a homologous transformation system Fung. Genet. Biol. 23 1998 34 44
13. C. Carsolio, A. Gutierrez, B. Jimenez, M. Van Montagu, and A. Herrera-Estrella Characterization of ech42, a Trichoderma harzianum endochitinase gene expressed during mycoparasitism Proc. Natl Acad. Sci USA 91 1994 10903 10907
14. C.K. Hayes, S. Klemsdal, M. Lorito, A. Di Pietro, C. Peterbauer, J.P. Nakas, A. Tronsmo, and G.E. Harman Isolation and sequence of an endochitinase-encoding gene from a cDNA library of Trichoderma harzianum Gene 38 1994 143 148
15. C.K. Peterbauer, M. Lorito, C.K. Hayes, G.E. Harman, and C.P. Kubicek Molecular cloning and expression of the nag1 gene (N-acetyl-beta-d- glucosaminidase-encoding gene) from Trichoderma harzianum P1 Curr. Genet. 30 1996 325 331
16. T.A. Brown Gene Cloning: An Introduction 2nd Edn. 1990 Chapman & Hall London, UK
17. J. Sambrook, E.F. Fritsch, and T. Maniatis Molecular Cloning: A Laboratory Manual 2nd ed. 1989 Cold Spring Harbour Laboratory Press New York, USA
18. A.M. Bailey, M.J. Kershaw, B.A. Hunt, I.C. Paterson, A.K. Charnley, S.E. Reynolds, and J.M. Clarkson Cloning and sequence analysis of an intron-containing domain from a peptide synthetase-encoding gene of the entomopathogenic fungus Metarhizium anisopliae Gene 173 1996 195 197
19. R.D. Johnson, L. Johnson, Y. Itoh, M. Kodama, H. Otani, and K. Kohmoto Cloning and characterization of a cyclic peptide synthetase gene from Alternaria alternata apple pathotype whose product is involved in AM-toxin synthesis and pathogenicity Mol. Plant-Microbe Int. 13 2000 742 753
20. A.P. MacCabe, H. van Liempt, H. Palissa, S.E. Unkles, M.B. Riach, E. Pfeifer, H. von Dohren, and J.R. Kinghorn Delta-(l-alpha-aminoadipyl)-l- cysteinyl-d-valine synthetase from Aspergillus nidulans. Molecular characterization of the acvA gene encoding the first enzyme of the penicillin biosynthetic pathway J. Biol. Chem. 266 1991 12646 12654
21. D.J. Smith, A.J. Earl, and G. Turner The multifunctional peptide synthetase performing the first step of penicillin biosynthesis in Penicillium chrysogenum is a 421,073 dalton protein similar to Bacillus brevis peptide antibiotic synthetases EMBO J. 9 1990 2743 2750
22. G. Weber, K. Schorgendorfer, E. Schneider-Scherzer, and E. Leitner The peptide synthetase catalyzing cyclosporine production in Tolypocladium niveum is encoded by a giant 45.8-kilobase open reading frame Curr. Genet. 26 1994 120 125
23. H.D. Mootz, and M.A. Marahiel The tyrocidine biosynthesis operon of Bacillus brevis: complete nucleotide sequence and biochemical characterization of functional internal adenylation domains J. Bacteriol. 179 1997 6843 6850
24. P. Bowyer DNA-mediated transformation in fungi N. Talbot Molecular and Cellular Biology of Filamentous Fungi: A Practical Approach 2001 Oxford University Press Oxford, UK 33 46
25. S.L. Annis, and D.G. Panaccione Presence of peptide synthetase gene transcripts and accumulation of ergopeptines in Claviceps purpurea and Neotyphodium coenophialum Can. J. Microbiol. 44 1998 80 86
26. G.L. Challis, J. Ravel, and C.A. Townsend Predictive, structure-based model of amino acid recognition by nonribosomal peptide synthetase adenylation domains Chem. Biol. 7 2000 211 224
27. J.J. May, N. Kessler, M.A. Marahiel, and M.T. Stubbs Crystal structure of DhbE, an archetype for aryl acid activating domains of modular nonribosomal peptide synthetases Proc. Natl. Acad. Sci. USA 99 2002 12120 12125
28. J.J. May, T.M. Wendrich, and M.A. Marahiel The dhb operon of Bacillus subtilis encodes the biosynthetic template for the catecholic siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin J. Biol Chem. 276 2001 7209 7217
29. P. Tudzynski, K. Holter, T. Correia, C. Arntz, N. Grammel, and U. Keller Evidence for an ergot alkaloid gene cluster in Claviceps purpurea Mol. Gen. Genet. 261 1999 133 141
30. K. Turgay, M. Krause, and M.A. Marahiel Four homologous domains in the primary structure of GrsB are related to domains in a superfamily of adenylate-forming enzymes Mol. Microbiol. 6 1992 2743 2744
31. I.F. den Herder, A.M. Rosell, C.M. van Zuilen, P.J. Punt, and C.A.M.J. van den Hondel Cloning and expression of a member of the Aspergillus niger gene family encoding alpha-galactosidase Mol. Gen. Genet. 233 1992 404 410
32. M.J. Gines, M.J. Dove, and V.L. Seligy Aspergillus oryzae has two nearly identical Taka-amylase genes, each containing eight introns Gene 79 1989 107 117
33. H. Whittington, S. Kerry-Williams, K. Bidgood, N. Dodsworth, J. Peberdy, M. Dobson, E. Hinchliffe, and D.J. Ballance Expression of the Aspergillus niger glucose oxidase gene in A. niger, A. nidulans and Saccharomyces cerevisiae Curr. Genet. 18 1990 531 536
34. T. Stachelhaus, H.D. Mootz, and M.A. Marahiel The specificity-conferring code of adenylation domains in nonribosomal peptide synthetases Chem. Biol. 6 1999 493 505
35. P.J. Punt, R.P. Oliver, M.A. Dingemanse, P.H. Pouwels, and C.A.M.J. van den Hondel Transformation of Aspergillus based on the hygromycin B resistance marker from Escherichia coli Gene 56 1987 117 124