DING proteins are from Pseudomonas

FEMS Microbiology Letters

Volumn 252, Issue 2, 2005, Pages 215-222

  Lewis, Alan P ^a   Crowther, Daniel ^a  

^a GLAXOSMITHKLINE   (United Kingdom)

Author keywords

ABC type phosphate transport system; DING protein; Periplasmic component; Pseudomonas; Synonymous codon usage

Indexed keywords

BACTERIAL PROTEIN; COMPLEMENTARY DNA; DING PROTEIN; DNA FRAGMENT; NUCLEOTIDE; PERIPLASMIC BINDING PROTEIN; PHOSPHATE BINDING PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL GENE; BACTERIAL INFECTION; CODON USAGE; DATA BASE; DNA SEQUENCE; EUKARYOTE; GENE SEQUENCE; GENOME; HYPERICUM PERFORATUM; MICROBIAL CONTAMINATION; NUCLEOTIDE SEQUENCE; PLANT GENETICS; PRIORITY JOURNAL; PROTEIN ANALYSIS; PSEUDOMONAS AERUGINOSA; SEQUENCE HOMOLOGY;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CODON; COMPUTATIONAL BIOLOGY; GENOME; HYPERICUM; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT PROTEINS; PSEUDOMONAS AERUGINOSA; SEQUENCE HOMOLOGY, AMINO ACID;

ANIMALIA; BACTERIA (MICROORGANISMS); EUKARYOTA; HYPERICUM PERFORATUM; PSEUDOMONAS; PSEUDOMONAS AERUGINOSA;

EID: 27444437375     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2005.08.047     Document Type: Article

References (33)

1. L. Adams, S. Davey, and K. Scott The DING protein: An autocrine growth-stimulatory protein related to the human synovial stimulatory protein Biochim. Biophys. Acta 1586 2002 254 264
2. N.A. Hain, B. Stuhlmuller, G.R. Hahn, J.R. Kalden, R. Deutzmann, and G.R. Burmester Biochemical characterization and microsequencing of a 205-kDa synovial protein stimulatory for T cells and reactive with rheumatoid factor containing sera J. Immunol. 157 1996 1773 1780
3. D. Bush, H. Fritz, C. Knight, J. Mount, and K. Scott A hirudin-sensitive, growth-related proteinase from human fibroblasts Biol. Chem. 379 1998 225 229
4. W.J. Kent BLAT - The BLAST-Like Alignment Tool Genome Res. 12 2002 656 664
5. T.D. Bui, D.R. Beier, M. Jonssen, K. Smith, S.M. Dorrington, L. Kaklamanis, L. Kearney, R. Regan, D.J. Sussman, and A.L. Harris cDNA cloning of a human dishevelled DVL-3 gene, mapping to 3q27, and expression in human breast and colon carcinomas Biochem. Biophys. Res. Commun. 239 1997 510 516
6. V. Kumar, S. Yu, G. Farell, F.G. Toback, and J.C. Lieske Renal epithelial cells constitutively produce a protein that blocks adhesion of crystals to their surface Am. J. Physiol. Renal. Physiol. 287 2004 F373 F383
7. J.P. Binette, and M.B. Binette Sequencing of proteins extracted from stones Scanning Microsc. 8 1994 233 239
8. W.K.C. Weebada, G.J. Hoover, D.B. Hunter, and M.A. Hayes Avian respiratory tract and serum proteins that bind surface oligosaccharides of Escherichia coli 02 Comp. Biochem. Physiol. B Biochem. Mol. Biol. 130 2001 299 312
9. O. Riah, J.C. Dousset, E. Bofill-Cardona, and P. Courriere Isolation and microsequencing of a novel cotinine receptor Cell. Mol. Neurobiol. 20 2000 653 664
10. A. Berna, F. Bernier, K. Scott, and B. Stuhlmüller Ring up the curtain on DING proteins FEBS Lett. 524 2002 6 10
11. S.F. Altschul, T.L. Madden, A.A. Schaeffer, J. Zhang, Z. Zhang, W. Miller, and D.J. Lipman Gapped BLAST and PSI-BLAST: A new generation of protein database search programmes Nucl. Acids Res. 25 1997 3389 3402
12. E.L.L. Sonnhammer, and R. Durbin A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis Gene 167 1995 1 10
13. N. Galtier, M. Gouy, and C. Gautier SeaView and Phylo_win, two graphic tools for sequence alignment and molecular phylogeny Comput. Applic. Biosci. 12 1996 543 548
14. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
15. J. Felsenstein PHYLIP - Phylogeny Inference Package (Version 3.2) Cladistics 5 1989 164 166
16. P. Rice, I. Longden, and A. Bleasby EMBOSS: The european molecular biology open software suite Trends Genet. 16 2000 276 277
17. M. Gribskov, J. Devereux, and R.R. Burgess The codon preference plot: Graphic analysis of protein coding sequences and prediction of gene expression Nucl. Acids Res. 12 1984 539 549
18. Y. Nakamura, T. Gojobori, and T. Ikemura Codon usage tabulated from the international DNA sequence databases: Status for the year 2000 Nucl. Acids Res. 28 2000 292
19. K. Scott, and L. Wu Functional properties of a recombinant bacterial DING protein: Comparison with a homologous human protein Biochim. Biophys. Acta 1744 2005 234 244
20. A. Torriani From cell membrane to nucleotides: the phosphate regulon in Escherichia coli Bioessays 12 1990 371 376
21. C. Hardalo, and S.C. Edberg Pseudomonas aeruginosa: Assessment of risk from drinking water Crit. Rev. Microbiol. 23 1997 47 75
22. G.P. Bodey, R. Bolivar, V. Fainstein, and L. Jadeja Infections caused by Pseudomonas aeruginosa Rev. Infect. Dis. 5 1983 279 313
23. J.M. Plotnikova, L.G. Rahme, and F.M. Ausubel Pathogenesis of the human opportunistic pathogen Pseudomonas aeruginosa PA14 in Arabidopsis Plant Physiol. 124 2000 1766 1774
24. Todar, K. (2005) Pseudomonas and related bacteria. In: Todar's Online Textbook of Bacteriology (http://www.textbookofbacteriology.net/ ).
25. H. Tighe, and D.A. Carson Rheumatoid factors W.N. Lelley E.D. Harris S. Ruddy C.B. Sledge Textbook of Rheumatology 1997 W.B. Saunders Company Philadelphia 241 249
26. T. Fehr, M.F. Bachmann, E. Bucher, U. Kalinke, F. Di Padova, A.B. Lang, H. Hengartner, and R.M. Zinkernagel Role of repetitive antigen patterns for induction of antibodies against antibodies J. Exp. Med. 185 1997 1785 1792
27. D.N. Posnett, and J. Edinger When do microbes stimulate rheumatoid factor? J. Exp. Med. 185 1997 1721 1723
28. J. Haier, M. Nasralla, A.R. Franco, and G.L. Nicolson Detection of mycoplasmal infections in blood of patients with rheumatoid arthritis Rheumatology 38 1999 504 509
29. S. Kobayashi, N. Tamura, G. Ichikawa, Y. Takasaki, and H. Hashimoto Reactive arthritis induced by Pseudomonas aeruginosa Clin. Rheumatol. 15 1996 516 517
30. M.A. Brancos, P. Peris, J.M. Miro, A. Monegal, J.M. Gatell, J. Mallolas, J. Mensa, S. Garcia, and J. Munoz-Gomez Septic arthritis in heroin addicts Semin. Arthritis Rheum. 21 1991 81 87
31. M. Dan, Y. Siegman-Igra, S. Pitlik, and R. Raz Oral ciprofloxacin treatment of Pseudomonas aeruginosa osteomyelitis Antimicrob. Agents Chemother. 34 1990 849 852
32. R. Cuchacovich, S. Japa, W.Q. Huang, A. Calvo, L. Vega, R.B. Vargas, R. Singh, D. Flores, I. Castro, and L.R. Espinoza Detection of bacterial DNA in Latin American patients with reactive arthritis by polymerase chain reaction and sequencing analysis J. Rheumatol. 29 2002 1426 1429
33. H.C. Gérard, Z. Wang, G.F. Wang, H. El-Gabalawy, R. Goldbach-Mansky, Y. Li, W. Majeed, H. Zhang, N. Ngai, A.P. Hudson, and H.R. Schumacher Chromosomal DNA from a variety of bacterial species is present in synovial tissue from patients with various forms of arthritis Arthritis Rheum. 44 2001 1689 1697