The bacterial cell cycle: DNA replication, nucleoid segregation, and cell division

Mikrobiologiya

Volumn 74, Issue 4, 2005, Pages 437-451

  Prozorov, A A ^a  

^a VAVILOV INSTITUTE OF GENERAL GENETICS   (Russian Federation)

Author keywords

Cellular septum; Chromosome; Division; DNA; Nucleoid

Indexed keywords

BACTERIA (MICROORGANISMS); EUKARYOTA;

BACTERIAL DNA; NUCLEOTIDE;

BACTERIAL CHROMOSOME; BACTERIAL PHENOMENA AND FUNCTIONS; BACTERIUM; CELL CYCLE; CELL DIVISION; CYTOLOGY; DNA REPLICATION; GENETICS; METABOLISM; PHYSIOLOGY; REVIEW;

BACTERIA; BACTERIAL PHYSIOLOGY; CELL CYCLE; CELL DIVISION; CHROMOSOMES, BACTERIAL; DNA REPLICATION; DNA, BACTERIAL; NUCLEOTIDES;

EID: 27344432537     PISSN: 00263656     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Review

References (104)

1. Jacob F., Brenner S., Cuzin F. On the regulation of DNA replication in bacteria // Cold Spring Harbor Symp. Quant Biol. 1963. V. 29. P. 329-348.
2. Lutkenhaus J., Mikerjee A. Cell division // Escherichia coli and Salmonella typhimurium / Ed. Neighard RC. 2nd ed. Washington: ASM Press, 1996. P. 1615-1626.
3. Rothfield L.I., Justice S. Bacterial cell division: the cycle of the ring // Cell. 1997. V. 88. No 3. P. 581-584.
4. Draper G., Gober J. Bacterial chromosome segregation // Annu. Rev. Microbiol. 2002. V. 56. P. 567-597.
5. Moriya S., Kato K., Yoshikawa H., Ogasawara N. Isolation of a dnaA mutant of Bacillus subtilis defective in initiation of replication: amount of DNA A protein determines cells initiation potencial // EMBO J. 1990. V. 9. No 9. P. 2905-2910.
6. Zyskind J., Smith D.W. DNA replication, the bacterial cell cycle, and cell growth // Cell. 1992. V. 69. No 1. P. 5-8.
7. Donachie W.D. Relationship between sell size and time of initiation of DNA replication // Nature. 1968. V. 219. No 5158. P. 1077-1079.
8. Donachie W.D., Begg K., Vicente M. Cell length, cell growth and cell division // Nature. 1976. V. 264. No 5584. P. 328-338.
9. Lemon K., Grossman A.D. Localization of bacterial DNA polymerase: evidence for a factory model of replication // Science. 1998. V. 282. No 360. P. 1516-1519.
10. Lemon K., Grossman A.D. Movement of replicating DNA through a stationare replisome // Mol. Cell. 2000. V. 6. No 4. P. 1321-1330.
11. Russell D., Zinder N.D. Hemimethylation prevent DNA replication in E. coli // Cell. 1987. V. 50. No 7. P. 1071-1079.
12. Liu M., Campbell J., Boye E., Kleckner N. SeqA: a negative modulator of replication initiation in E. coli // Cell. 1994. V. 77. No 3. P. 413-426.
13. Wake R., Errington J. Chromosome partitioning in bacteria // Annu. Rev. Genet. 1995. V. 29. P. 41-67.
14. Gordon G., Wright A. DNA segregation in bacteria // Annu. Rev. Microbiol. 2000. V. 54. P. 681-708.
15. Gordon G., Sitnikov D., Webb C., Teleman A., Straight A., Losick R., Murray A., Wright A. Chromosome and low copy plasmid segregation in E. coli: visual evidence for distinct mechanisms // Cell. 1997. V. 90. No 5. P. 1113-1121.
16. Niki H., Hiraga S. Polar localization of the replication origin and terminus in Escherichia coli nucleoids during chromosome partitioning // Genes Develop. 1998. V. 12. No 8. P. 1036-1045.
17. Niki H., Yamaichi Y., Hiraga S. Dynamic organization of chromosomal DNA in Escherichia coli // Genes Develop. 2000. V. 14. No 2. P. 212-223.
18. Yamaichi Y., Niki H. Active segregation by the Bacillus subtilis partitioning system in Escherichia coli // Proc. Natl. Acad. Sci. USA. 2000. V. 97. No 18. P. 14656-14661.
19. Gordon G., Shivers R., Wright A. Polar localization of the Escherichia coli oriC region is independent of the site of replication initiation // Mol. Microbiol. 2002. V. 44. No 2. P. 501-509.
20. Yamaichi Y., Niki H. migS, a cis-acting site that affects bipolar positioning of oriC on the Escherichia coli chromosome // EMBO J. 2004. V. 23. No 1. P. 221-223.
21. Lau I., Filipe S., Soballe B., Okstad O.-A., Barre F.-X., Sherratt D. Special and temporal organization of replicating Escherichia coli chromosomes // Mol. Microbiol. 2003. V. 49. No 3. P. 731-743.
22. Sharpe M., Errington J. The Bacillus subtilis sojspoOJ-locus is required for a centromere-like function involving in prespore chromosome partitioning // Mol. Microbiol. 1996. V. 21. No 3. P. 501-509.
23. Glaser P., Sharpe M., Raetner B., Perego M., Olsen K., Errington G. Dynamic, mitotic-like behavior of a bacterial protein required for chromosome partitioning // Genes Develop. 1997. V. 11. No 9. P. 1160-1168.
24. Lewis P., Errington J. Direct evidence for active segregation of oriC regions of the Bacillus subtilis chromosome and co-locatization with the SpoOJ partitioning protein // Mol. Microbiol. 1997. V. 25. No 5. P. 945-954.
25. Lin D., Levin P., Grossman A.D. Bipolar localization of a chromosome partition protein in Bacillus subtilis // Proc. Natl. Acad. Sci. USA. 1997. V. 94. No 9. P. 4721-4726.
26. Webb Ch., Teleman A., Gordon S., Straight A., Belmont A., Lin D., Grossman A.D., Wright A., Losick R. Bipolar localization of the replication origin regions of chromosomes in vegetative and sporulating cells of B. subtilis// Cell. 1997. V. 88. No 5. P. 667-674.
27. Wu L., Errington J. Use of asymmetric cell division and SPOIII E mutant to probe chromosome orientation and organization in Bacillus subtilis // Mol. Microbiol. 1998. V. 27. No 4. P. 777-786.
28. Wu L., Errington J. A large dispersed chromosomal region required for chromosome segregation in sporulating cells of Bacillus subtilis // EMBO J. 2002. V. 21. No 15. P. 4001-4011.
29. Lin D., Grossman A.D. Identification and characterization of a bacterial chromosome partitioning site // Cell. 1998. V. 92. No 5. P. 675-685.
30. Marston A., Errington J. Dynamic movement of the ParA-like Soj protein of B. subtilis and its dual role in nucleoid organization and developmental regulation // Mol. Cell. 1999. V. 4. No 3. P. 673-682.
31. Ben-Yehuda S., Rudner D., Losick R. Rac A, a bacterial protein that anchors chromosomes to the cell poles // Science. 2003. V. 299. No 5606. P. 532-536.
32. Autret S., Nair R., Errington J. Genetic analysis of the chromosome segregation protein SpoOJ of Bacillus subtilis: evidence for separate domains involved in DNA binding and interaction with Soj protein // Mol. Microbiol. 2001. V. 41. No 3. P. 743-755.
33. Thomaides H., Freeman M., El Karoui M., Errington J. Division site selection protein DivIA of Bacillus subtilis has a second distinct function in chromosomal segregation during sporulation // Genes Develop. 2001. V. 15. No 8. P. 1662-1673.
34. 2B // J. Bacteriol. 2003. V. 185. No 2. P. 693-697.
35. Mohl D., Gober J. Cell cycle-dependent polar localization of chromosome partitioning proteins in Caulobacter crescentusl // Cell. 1997. V. 88. No 5. P. 675-684.
36. Mohl D., Easter J., Gober J. The chromosome partitioning protein, ParB, is required for cytokinesis in Caulobacter crescentus // Mol. Microbiol. 2001. V. 42. No 3. P. 741-755.
37. Rizzo M., Shapiro L., Gober J. Asymmetric expression of the gyrase B gene from the replication-component chromosome in the Caulobacter crescentus predivisional cell // J. Bacteriol. 1993. V. 175. No 21. P. 6970-6981.
38. Hidaka M., Kobayashi T., Horiuchi T. A newly identified DNA replication terminus site, terC, on the Escherichia coli chromosome // J. Bacteriol. 1991. V. 173. No 1. P. 391-393.
39. Perals K., Cornet F., Merlet Y., Delon I., Louarn J.-M. Functional polarization of the Escherichia coli chromosome terminus: the dif site acts in chromosome dimer resolution only when located between long stretches of opposite polarity // Mol. Microbiol. 2000. V. 36. No 1. P. 33-43.
40. Perals K., Capiaux H., Vincourt J.-B., Louarn J.-M., Sherratt D., Cornet F. Interplay between recombination, cell division and chromosome structure during chromosome dimer resolution in Escherichia coli // Mol. Microbiol. 2001. V. 39. No 4. P. 904-913.
41. Ip S., Bregu M., Barre F.-X., Sherratt D. Decatenation of DNA circles by FtsK-dependent xer site-specific recombination // EMBO J. 2003. V. 22. No 23. P. 6399-6407.
42. Steck T.R., Drlika K. Bacterial chromosome segregation: evidence for DNA gyrase involvement in dekatenation // Cell. 1984. V. 36. No 5. P. 1081-1088.
43. Lobner-Olsen A., Kuempel P.L. Chromosome partitioning in Escherichia coli // J. Bacteriol. 1992. V. 174. No 24. P. 7883-7889.
44. Horiuchi T., Fujimura H., Kobayashi T., Hidaka M. The DNA replication fork blocked at the ter site may be an entrance for the RecBCD enzyme into duplex DNA // J. Bacteriol. 1994. V. 176. No 15. P. 4656-4663.
45. Webb Ch., Graumann P., Kahana J., Teleman A., Silver P., Losick R. Use of time-lapse microscopy to visualize rapid movement of the replication origin region of the chromosome during the cell cycle in Bacillus subtilis // Mol. Microbiol. 1998. V. 28. No 5. P. 883-892.
46. Hiraga S., Ichinose Ch., Niki H., Yamazoe M. Cell cycle-dependent duplication and bidirection migration of SeqA-associated DNA-protein complexes in E. coli // Mol. Cell. 1998. V. 1. No 2. P. 381-387.
47. Hiraga S., Ogura T., Niki H., Ishinose Ch., Mori H. Positioning of replicated chromosomes in Escherichia coli // J. Bacteriol. 1990. V. 172. No 1. P. 31-39.
48. Pettijohn D. Histone-like proteins and bacterial chromosome structure // J. Biol. Chem. 1988. V. 263. No 10. P. 12793-12796.
49. Holmes V., Cozzarelli N. Closing the ring: links between SMS proteins and chromosome partitioning, condensation, and supercoiling // Proc. Natl. Acad. Sci. USA. 2000. V. 97. No 4. P. 1322-1324.
50. Hiraga S., Niki H., Ogura T., Ishinose C., Mori H., Ezaki B., Jaffe A. Chromosome partitioning in Escherichia coli: novel mutants producing anucleate cells // J. Bacteriol. 1989. V. 171. No 3. P. 1496-1505.
51. Niki H., Jaffe A., Imamura R., Ogura T., Hiraga S. The new gene mucB codes for a 177 kb protein with coiled-coil domains involved in chromosome partitioning of E. coli // EMBO J. 1991. V. 10. No 1. P. 183-193.
52. Hiraga S. Chromosome and plasmid partition in Escherichia coli // Annu. Rev. Biochem. 1992. V. 61. P. 283-306.
53. Melby T., Ciampaglio Ch., Briscoe G., Erickson H. The symmetrical structure of structural maintenance of chromosomes (SMS) and MukB proteins: long, antiparalled coiled coils, folded at a flexible hinge // J. Cell. Biol. 1998. V. 142. No 6. P. 1595-1604.
54. Strunnikov A.V., Jessberger R. Structural maintenance of chromosomes (SMS) proteins: concerved molecular properties for multiple biochemical functions // Eur. J. Biochem. 1999. V. 263. No 1. P. 6-13.
55. Lindow J., Kumano M., Moriya S., Grossman A.D. Subcellular localization of the Bacillus subtilis structural maintenance of chromosome (SMC) protein // Mol. Microbiol. 2002. V. 46. No 4. P. 997-1009.
56. Lemon K., Grossman A.D. The extrusion-capture model for chromosome partitioning in bacteria // Genes Develop. 2001. V. 15. No 16. P. 2031-2041.
57. Sawitzke J., Austin S. An analysis of the factory model for chromosome replication and segregation in bacteria // Mol. Microbiol. 2001. V. 40. No 4. P. 786-794.
58. Graumann P., Losick R., Strunnikov A.V. Subcellular localization of Bacillus subtilis SMC, a protein involved in chromosome condensation and segregation // J. Bacteriol. 1998. V. 180. No 12. P. 5749-5755.
59. Moriya S., Tsujikawa E., Hassan A., Asai K., Kodama T., Ogasawara N. A Bacillus subtilis gene-encoding protein is necessary for chromosome partition // Mol. Microbiol. 1998. V. 29. No 1. P. 179-187.
60. Britton R., Lin D., Grossman A.D. Characterization of a prokaryotic SMC protein involved in chromosome partitioning // Genes Develop. 1998. V. 12. No 4. P. 1254-1259.
61. Mukherjee A., Donachie W. Differential translation of cell division proteins // J. Bacteriol. 1990. V. 172. No 10. P. 6106-6111.
62. De Boer P., Crossley R., Rothfield L. The essential bacterial cell division protein FtsZ is a GTPase // Nature. 1992. V. 359. No 6392. P. 254-256.
63. Mukherjee A., Dai K., Lutkenhaus J. Escherichia coli cell division protein FtsZ is a guanine nucleotide binding protein // Proc. Natl. Acad. Sci. USA. 1993. V. 90. No 3. P. 1053-1057.
64. Erickson H., Taylor D., Taylor K., Bramhill D. Bacterial cell division protein FtsZ assembles into protofilament sheets and minirings, structural homologs of tubulin polymers // Proc. Natl. Acad. Sci. USA. 1996. V. 93. No 1. P. 519-523.
65. Bi E., Lutkenhaus J. FtsZ regulates frequency of cell division in Escherichia coli // J. Bacteriol. 1990. V. 172. No 5. P. 2765-2768.
66. Adler H., Fisher A., Cohen A., Hardigree A. Miniature Escherichia coli sells deficient in DNA // Proc. Natl. Acad. Sci. USA. 1967. V. 57. No 2. P. 321-326.
67. Raskin D.M., de Boer P. The MinE ring: an FtsZ-independent cell structure required for selection of the correct division site in E. coli // Cell. 1997. V. 91. No 5. P. 685-694.
68. Marston A., Thomaides H., Edwards D., Sharpe M., Errington J. Polar localization of the MinD protein of Bacillus subtilis and its role in selection of the mid-cell division site // Genes Develop. 1998. V. 12. No 21. P. 3419-3430.
69. Hale C., de Boer P. Direct binding of FtsZ to ZipA, an essential component of the septal ring structure that mediates cell division in E. coli // Cell. 1997. V. 88. No 2. P. 175-185.
70. Addinall S., Lutkenhaus J. FtsZ-spirals and -arcs determine the shape of the invaginating septa in some mutants of Escherichia coli // Mol. Microbiol. 1996. V. 22. No 2. P. 231-237.
71. Huisman D., D'Ari R., Gottesman S. Cell-division control in Escherichia coli: specific induction of the SOS function SfiA protein is sufficient to block septation // Proc. Natl. Acad. Sci. USA. 1984. V. 81. No 14. P. 4490-4494.
72. Jones C., Holland I. Role of the SfiB (FtsZ) protein in division inhibition during the SOS response in E. coli: FtsZ stabilizes the inhibitor SfiA in maxicells // Proc. Natl. Acad. Sci. USA. 1985. V. 82. No 18. P. 6045-6049.
73. Jaffe A., D'Ari R., Norris V. SOS-independent coupling between DNA replication and cell division in Escherichia coli // J. Bacteriol. 1986. V. 165. No 1. P. 66-71.
74. De Boer P., Cook W., Rothfield L. Bacterial cell division // Annu. Rev. Genet. 1990. V. 24. P. 249-274.
75. Mukherjee A., Cao C., Lutkenhaus J. Ingibition of FtsZ polymerization by SulA, an ingibitor of septation in Escherichia coli // Proc. Natl. Acad. Sci. USA. 1998. V. 95. No 6. P. 2885-2890.
76. Ward J., Lutkenhaus J. Overproduction of FtsZ induces minicells in E. coli // Cell. 1985. V. 42. No 3. P. 941-949.
77. Bi E., Lutkenhaus J. FtsZ ring structure associated with cell division in Escherichia coli // Nature. 1991. V. 354. No 6349. P. 161-164.
78. Hu Z., Mukherjee A., Pichoff S., Lutkenhaus J. The MinC component of the division site selection system in E. coli interact with FtsZ and prevents polymerization // Proc. Natl. Acad. Sci. USA. 1999. V. 96. No 26. P. 14819-14824.
79. Hu Z., Lutkenhaus J. Topological regulation of cell division in Escherichia coli involves rapid pole to pole oscillation of the cell division inhibitor Min C under the control of MinD and MinE // Mol. Microbiol. 1999. V. 34. No 1. P. 82-90.
80. Hu Z., Saez C., Lutkenhaus J. Recruitment of Min C, an inhibitor of Z-ring formation, to the membrane in Escherichia coli: role of MinD and MinE // J. Bacteriol. 2003. V. 185. No 1. P. 196-203.
81. Beall B., Lutkenhaus J. FtsZ in Bacillus subtilis is required for vegetative septation and for asymmetric septation during sporulation // Genes Develop. 1991. V. 5. No 3. P. 447-455.
82. Harry E., Lewis P. Early targeting of Min proteins to the poles in germinates spores of Bacillus subtilis: evidence for division apparatus - independent recruitment of Min proteins to the division site // Mol. Microbiol. 2003. V. 47. No 1. P. 37-48.
83. Autret S., Errington J. A role for division-site-selection protein MinD in regulation of internucleoid jumping of Soj (ParA) protein in Bacillus subtilis // Mol. Microbiol. 2003. V. 47. No 1. P. 159-169.
84. Osteryoung K., Vierling E. Conserved cell and organelle division // Nature. 1995. V. 376. No 7352. P. 473-474.
85. Lutkenhaus J., Donachie W. Identification of the ftsA gene product // J. Bacteriol. 1979. V. 137. No 3. P. 1088-1094.
86. Sanchez M., Valencia A., Ferrandiz M.-J., Sander C., Vicente M. Correlation between the structure and biochemical activities of FtsA, an essential cell division protein of the actin family // EMBO J. 1994. V. 13. No 20. P. 4919-4925.
87. Ma X., Ehrhardt D., Margolin W. Colocalization of cell division proteins FtsZ and FtsA to cytoskeletal structures in living Escherichia coli cells by using green fluorescent protein // Proc. Natl. Acad. Sci. USA. 1996. V. 93. No 12. P. 12998-13003.
88. Tormo A., Vicente M. The ftsA gene product participates in formation of the Escherichia coli septum structure // J. Bacteriol. 1984. V. 157. No 3. P. 779-784.
89. Spratt B.G. Distinct penicillin-binding proteins involved in the division, elongation and shape of Escherichia coli K-12 // Proc. Natl. Acad. Sci. USA. 1975. V. 72. No 18. P. 2999-3003.
90. Begg K., Dewar S., Donachie W. A new Escherichia coli division gene, ftsK // J. Bacteriol. 1995. V. 177. No 21. P. 6211-6222.
91. Wang L., Lutkenhaus J. FtsK is an essential cell division protein that is localized to the septum and induced as part of the SOS response // Mol. Microbiol. 1998. V. 29. No 3. P. 731-740.
92. Nanniga N. Cell division and peptidoglycan assembly in Escherichia coli // Mol. Microbiol. 1991. V. 5. No 3. P. 791-795.
93. Fung J., MacAlister T., Rothfield L. Role of murein-lipoprotein in morphogenesis of the bacterial division septum; phenotypic similarity of lkyD and lpo mutants // J. Bacteriol. 1978. V. 133. No 10. P. 1467-1471.
94. Kellenberger E. Intracellular organization of the bacterial genome // The bacterial chromosome / Eds. Drlica K., Riley M. Washington: ASM Press, 1990.
95. Hiraga S. Dynamic localization of bacterial and plasmid chromosomes // Annu. Rev. Genet. 2000. V. 34. P. 21-59.
96. Moller-Jensen J., Jensen R., Lowe J., Gerdes K. Prokaryotic DNA segregation by an actin-like filament // EMBO J. 2002. V. 21. No 8. P. 3119-3127.
97. 1 moves plasmid DNA by an actin-like insertional polymerization mechanism // Mol. Cell. 2003. V. 12. No 6. P. 1477-1487.
98. Nordstrom K., Bernander R., Dasgupta S. The Escherichia coli cycle: one cycle or multiple independent processes that are co-ordinated? // Mol. Microbiol. 1991. V. 5. No 4. P. 769-774.
99. Rothfield L. Bacterial chromosome segregation // Cell. 1994. V. 77. No 7. P. 963-966.
100. Wheeler R., Shapiro L. Bacterial chromosome segregation: is there a mitotic apparatus? // Cell. 1997. V. 88. No 3. P. 577-579.
101. Donachie W. Co-ordinate regulation of the Escherichia coli cell cycle, or the cloud of unknowing // Mol. Microbiol. 2001. V. 40. No 4. P. 779-785.