Construction of 2 intraspecific linkage maps and identification of resistance QTLs for Phytophthora capsici root-rot and foliar-blight diseases of pepper (Capsicum annuum L.)

Genome

Volumn 48, Issue 4, 2005, Pages 698-711

  Ogundiwin, Ebenezer A ^a   Berke, Terry F ^b   Massoudi, Mark ^c   Black, Lowell L ^d   Huestis, Gordon ^b   Choi, Doil ^e   Lee, Sanghyeob ^e   Prince, James P ^a  

^a CALIFORNIA STATE UNIVERSITY   (United States)

^b Seminis Vegetable Seeds   (United States)

^c Ag Biotech Inc   (United States)

^d Seminis Vegetable Seeds   (United States)

^e Korea Research Institute of Bioscience and Biotechnology (KRIBB)   (South Korea)

Author keywords

Fasciculate; Fruit shape; Isolates; Pepper; Phytophthora capsici; QTLs; Resistance

Indexed keywords

ANALYSIS OF VARIANCE; ARTICLE; CHROMOSOME MAP; CROSS BREEDING; GENETIC LINKAGE; GENETIC MARKER; GENETICS; GROWTH, DEVELOPMENT AND AGING; INBREEDING; INNATE IMMUNITY; METHODOLOGY; MICROBIOLOGY; PEPPER; PHENOTYPE; PHYTOPHTHORA; PLANT CHROMOSOME; PLANT DISEASE; PLANT LEAF; PLANT ROOT; QUANTITATIVE TRAIT LOCUS; SPECIES DIFFERENCE;

ANALYSIS OF VARIANCE; CAPSICUM; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; CROSSES, GENETIC; GENETIC MARKERS; IMMUNITY, NATURAL; INBREEDING; LINKAGE (GENETICS); LOD SCORE; PHENOTYPE; PHYTOPHTHORA; PLANT DISEASES; PLANT LEAVES; PLANT ROOTS; QUANTITATIVE TRAIT LOCI; SPECIES SPECIFICITY;

CAPSICUM ANNUUM; PHYTOPHTHORA CAPSICI;

EID: 26944491485     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G05-028     Document Type: Article

References (43)

1. Barksdale, T.H., Papavizas, G.C., and Johnston, S.A. 1984. Resistance to foliar blight and crown rot of pepper caused by Phytophthora capsici. Plant Dis. 68: 506-509.
2. Bartual, R., Carbonell, E.A., Marsal, J.I., Tello, J.C., and Campos, T. 1991. Gene action in the resistance of peppers (Capsicum annuum) to Phytophthora stem blight (Phytophthora capsici L.). Euphytica, 54: 195-200.
3. Bartual, R., Lacasa, A., Marsal, J.I., and Tello, J.C. 1994. Epistasis in the resistance of pepper to Phytophthora stem blight (Phytophthora capsici L.) and its significance in the prediction of double cross performances. Euphytica, 72: 149-152.
4. Basten, C.J., Weir, B.S., and Zeng, Z.B. 1997. QTL CARTOGRAPHER: a reference manual and tutorial for QTL mapping. Department of Statistics, North Carolina State University, Raleigh, N.C.
5. Bosland, P.W., and Lindsey, D.L. 1991. A seedling screen for Phytophthora root rot of pepper, Capsicum annuum. Plant Dis. 75: 1048-1050.
6. Café-Filho, A.C., and Duniway, J.M. 1996. Effect of location of drip irrigation emitters and position of Phytophthora capsici infections on roots on Phytophthora root rot of pepper. Phytopathology, 86: 1364-1369.
7. Grube, R.C., Radwanski, E., and Jahn, M. 2000. Comparative genetics of disease resistance within the Solanaceae. Genetics, 155: 873-887.
8. Hwang, B.K., and Kim, C.H. 1995. Phytophthora blight of pepper and its control in Korea. Plant Dis. 79: 221-227.
9. 2 linkage map in pepper using RFLP and AFLP markers. Theor. Appl. Genet. 102: 531-539.
10. Kim, Y.J., Hwang, B.K., and Park, K.W. 1989. Expression of age-related resistance in pepper plants infected with Phytophthora capsici. Plant Dis. 73: 745-747.
11. Kim, B.D., Kang, B.C., Nahm, S.H., Huh, J.H., Yoo, S.H., and Kwon, J.K. 1998. Construction of molecular linkage map and development of fluorescence in situ hybridization technique in hot pepper. In Proceedings of the 10th EUCARPIA Meeting on Genetics and Breeding of Capsicum and Eggplant, Avignon, France, 7-11 September 1998. Edited by A. Palloix and M.C. Daunay. Institut National de la Recherche Agronomique, Avignon, France, pp. 227-230.
12. Kosambi, D.D. 1944. The estimation of map distance from recombination values. Ann. Eugen. 12: 172-175.
13. Lamour, K.H., and Hausbeck, M.K. 2001. The dynamics of Mefenoxam insensitivity in a recombining population of Phytophthora capsici characterized with amplified fragment length polymorphism markers. Phytopathology, 91: 553-557.
14. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln S.E., and Newberg, L. (1987). Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genetics, 121: 174-181.
15. Lee, J.M., Nahm, S.H., Kim, Y.M., and Kim, B.D. 2004. Characterization and molecular genetic mapping of microsatellite loci in pepper. Theor. Appl. Genet. 108: 619-627.
16. Lefebvre, V., and Palloix, A. 1996. Both epistatic and additive effects of QTLs are involved in polygenic induced resistance to disease: a case study, the interaction pepper - Phytophthora capsici Leonian. Theor. Appl. Genet. 93: 503-511.
17. Lefebvre, V., Palloix, A., Caranta, C., and Pochard, E. 1995. Construction of an intra-specific integrated linkage map of pepper using molecular markers and doubled-haploid progenies. Genome, 38: 112-121.
18. Lefebvre, V., Pflieger, S., Thabuis, A., Caranta, C., Blattes, A., Chauvet, J.-C., Daubeze, A.-M., and Palloix, A. 2002. Towards the saturation of the pepper linkage map by alignment of three intraspecific maps including known-function genes. Genome, 45: 839-854.
19. Livingstone, K.D., Lackney, V.K., Blauth, J., van Wijk, R., and Jahn, M.K. 1999. Genome mapping in Capsicum and the evolution of genome structure in the Solanaceae. Genetics, 152: 1183-1202.
20. Oelke, L.M., Bosland, P.W., and Steiner, R. 2003. Differentiation of race specific resistance to Phytophthora root rot and foliar blight in Capsicum annuum. J. Am. Soc. Hort. Sci. 128: 213-218.
21. Ortega, R., Espanol, C.P., and Zueco, J.C. 1991. Genetics of resistance to Phytophthora capsici in the pepper line 'SM-334'. Plant Breed. 107: 50-55.
22. Ortega, R., Palazón Español, C., and Cuartero Zueco, J. 1992. Genetic relationships among four pepper genotypes resistant to Phytophthora capsici. Plant Breed. 108: 118-125.
23. Palloix, A., Daubeze, A.M., and Pochard, E. 1988. Phytophthora root rot of pepper influence of host genotype and pathogen strain on the inoculum density-disease severity relationships. J. Phytopathology, 123: 25-33.
24. Palloix, A., Daubeze, A.M, Phaly, T., and Pochard, E. 1990. Breeding transgressive lines of pepper for resistance to Phytophthora capsici in a recurrent selection system. Euphytica, 51: 141-150.
25. Paran, I., van der Voort, J.R., Lefebvre, V., Jahn, M., Landry, L., van Schriek, M., Tanyolac, B., Caranta, C., Chaim, A.B., Livingstone, K., Palloix, A., and Peleman, J. 2004. An integrated genetic linkage map of pepper (Capsicum spp.). Mol. Breed. 13: 251-261.
26. Parra, G., and Ristaino, J.B. 2001. Resistance to mefenoxam and metalaxyl among field isolates of Phytophthora blight of bell pepper. Plant Dis. 85: 1069-1075.
27. Polach, F.J., and Webster, R.K. 1972. Identification of strains and inheritance of pathogenicity in Phytophthora capsici. Phytopathology, 62: 20-26.
28. Prince, J.P., Pochard, E., and Tanksley, S.D. 1993. Construction of molecular linkage map of pepper and a comparison of synteny with tomato. Genome, 36: 404-417.
29. Prince, J.P., Zhang, Y., Radwanski, E.R., and Kyle, M.M. 1997. A versatile and high-yielding protocol for the preparation of genomic DNA from Capsicum spp. (pepper). Hortic Sci. 32: 937-939.
30. Quirin, E.A., Ogundiwin, E.A., Prince, J.P., Mazourek, M., Briggs, M.O., Chlanda, T.S., Kim, K.T., Falise, M., Kang, B.C., and Jahn, M.M. 2005. Development of sequence characterized amplified region (SCAR) primers for the detection of Phyto.5.2, a major QTL for resistance to Phytophthora capsici Leon. in pepper. Theor. Appl. Genet. 110: 605-612.
31. Reifschneider, F.J.B., Café-Filho, A.C., and Rego, A.M. 1986. Factors affecting expression of resistance in pepper (Capsicum annuum) to blight caused by Phytophthora capsici in screening trials. Plant Pathol. 35: 451-456.
32. Reifschneider, F.J.B., Boeteux, L.S., Vecchia, P.T., Poulos, J.M., and Kuroda, N. 1992. Inheritance of adult-plant resistance to Phytophthora capsici in pepper. Euphytica, 62: 45-49.
33. Ristaino, J.B. 1990. Intraspecific variation among isolates of Phytophthora capsici from pepper and cucurbit fields in North Carolina. Phytopathology, 80: 1253-1259.
34. Ristaino, J.B., and Johnston, S.B. 1999. Ecologically-based approaches to management of Phytophthora blight on bell pepper. Plant Dis. 83: 1080-1089.
35. Rozen, S., and Skaletsky, H.J. 2000. Primer3 on the WWW for general users and for biologist programmers. In Bioinformatics methods and protocols: methods in molecular biology. Edited by Krawetz, S., and Misener, S. Humana Press, Totowa, N.J. pp. 365-386.
36. Smith, P.G., Kimble, K.A., Grogan, R.G., and Millett, A.H. 1967. Inheritance of resistance in peppers to Phytophthora root rot. Phytopathology, 57: 377-379.
37. Tai, T.H., Dahlbeck, D., Clark, E.T., Gajiwala, P., Pasion, R., Whalen, M.C., Stall, R.E., and Staskawicz, B.J. 1999. Expression of the Bs2 pepper gene confers resistance to bacterial spot disease in tomato. Proc. Natl. Acad. Sci. U.S.A. 96: 14153-14158.
38. Thabuis, A., Lefebvre, V., Daubeze, A.M., Signoret, P., Phaly, T., Nemouchy, G., Blattes, A., and Palloix, A. 2001. Introgression of a partial resistance to Phytophthora capsici Leon, into a pepper elite line by marker assisted backcrosses. Acta Hortic. 546: 645-650.
39. Thabuis, A., Palloix, A., Pflieger, S., Daubèze, A.M., Caranta, C., and Lefebvre, V. 2003. Comparative mapping of Phytophthora resistance loci in pepper germplasm: evidence for conserved resistance loci across Solanaceae and for a large genetic diversity. Theor. Appl. Genet. 106: 1473-1485.
40. Thabuis, A., Lefebvre, V., Bernard, G., Daubeze, A.M., Phaly, T., Porchard, E., and Palloix, A. 2004. Phenotypic and molecular evaluation of a recurrent selection program for a polygenic resistance to Phytophthora capsici in pepper. Theor. Appl. Genet. 109: 342-351.
41. Velleman, P.F. 1985. Data Desk, the new power of statistical vision. Data Description Inc., Ithaca, N.Y.
42. Walker, S.J., and Bosland, P.W. 1999. Inheritance of Phytophthora root rot and foliar blight resistance in pepper. J. Am. Soc. Hort. Sci. 124: 14-18.
43. Wang, S., Basten, C.J., and Zeng, Z.B. 2003. Windows QTL Cartographer 2.0. Department of Statistics, North Carolina State University, Raleigh, N.C.