Biomolecular Immune-Computer: Theoretical basis and experimental simulator

Lecture Notes in Computer Science

Volumn 3627, Issue , 2005, Pages 72-85

  Goncharova, Larisa B ^a   Jacques, Yannick ^b   Martin Vide, Carlos ^c   Tarakanov, Alexander O ^d   Timmis, Jonathan I ^e  

^a ST PETERSBURG PASTEUR INSTITUTE   (Russian Federation)

^b INSTITUT DE BIOLOGIE   (France)

^c UNIVERSITAT ROVIRA I VIRGILI   (Spain)

^d ST PETERSBURG INSTITUTE FOR INFORMATICS AND AUTOMATION   (Russian Federation)

^e UNIVERSITY OF YORK   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER CONTROL; SIMULATORS;

BIOMOLECULAR COMPUTERS; BIOMOLECULAR IMMUNE-COMPUTER; IMMUNE-COMPUTER; NATURAL IMMUNE SYSTEMS;

IMMUNOLOGY;

EID: 26944468234     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11536444_6     Document Type: Conference Paper

References (34)

1. Adamatzky, A. Computing in Nonlinear Media and Automata Collectives. Institute of Physics Publishing, Bristol (2001)
2. Ader, R., Felten, D.L., Cohen, N. (eds.): Psychoneuroimmunology. Academic Press, New York (2001)
3. Adleman, L.M. Computing with DNA. Scientific American 279/2 (1998) 54-61
4. Agnati, L.F., Tarakanov, A.O., Ferre, S., Fuxe, K. Receptor-receptor interactions, receptor mosaics, and basic principles of molecular network organization: possible implications for drug development. J. Mol. Neurosci. 26/2-3 (2005) (in press)
5. Agnati, L.F., Tarakanov, A.O., Guidolin, D. A simple mathematical model of cooperativity in receptor mosaics based on the "symmetry rule". BioSystems 80/2 (2005) 165-173
6. Bernard, J., Harb, C., Mortier, E., Quemener, A., Meloen, R.H., Vermont-Desroches, C., Wijdeness, J., Van Dijken, P., Grotzinger, J., Slootstra, J.W., Plet, A., Jacques, Y. Identification of an interleukin-15 {alpha} receptor-binding site on human interlukin-15. J. Biol. Chem. 279 (2004) 24313-24322
7. Bunk, S. Signal blues: stress and cytokine levels underpin a provocative theory of depression. The Scientists, August 25 (2003) 24-28
8. Caumont, A. On the right track of Triverity: data device finds a niche in racing, extreme sports. The Washingtonpost, January 24 (2005) E05
9. Chomsky, N. Reflections of Language. Pantheon Books, New York (1975)
10. Dawkins, R. The Selfish Gene. Oxford University Press (1989)
11. Dasgupta, D. (ed.): Artificial Immune Systems and Their Applications. Springer-Verlag, Berlin (1999)
12. De Castro, L.N., Timmis, J. Artificial Immune Systems: A New Computational Intelligence Approach. Springer-Verlag, London (2002)
13. Fisher, P.B., Gopalkrishnan, R.V., Chada, S., Ramesh, R., Grimm, A., Rosenfeld, M.R., Curiel, D.T., Dent, P. mda-7/IL-24, a novel cancer selective apoptosis inducing cytokine gene: from the laboratory into the clinic. Cancer Biology and Therapy 2 (2003) S023-S037
14. Goncharova, L.B., Melnikov, Y.B., Tarakanov, A.O. Biomolecular immunocomputing. Lecture Notes in Computer Science, Vol. 2787. Springer-Verlag, Berlin (2003) 102-110
15. Hisada M., Kamiya, S., Fujita, K., Belladonna, M.L., Aoki, T., Koyanagi, Y., Mizuguchi, J., Yoshimoto, T. Potent antitumor activity of interleukin-27. Cancer Research 64 (2004) 1152-1156
16. Kourilsky, P., Truffa-Bachi, P. Cytokine fields and the polarization of the immune response. Trends in Immunology 22 (2001) 502-509
17. Kung, S.Y., Mak M.W., Lin, S.H. Biometric Authentication: A Machine Learning Approach. Prentice Hall (2005)
18. Kurzrock, R. Cytokine deregulation in cancer. Biomedecine & Pharmacotherapy 55/9/10 (2001) 543-547
19. Lallement, G. Semirings and Combinatorial Applications. John Wiley & Sons, New York (1979)
20. Magrangeas, F., Boisteau, O., Denis, S., Jacques, Y., Minvielle, S. Negative cross-talk between interleukin-3 and interleukin-11 is mediated by suppressor of cytokine signalling-3 (SOCS-3). Biochem. J. 353 (2001) 223-230
21. Martin-Vide, C., Mitrana, V. (eds.): Where Mathematics, Computer Science, Linguistics and Biology Meet. Kluwer, Dordrecht (2001)
22. Martin-Vide, C., Mitrana, V. (eds.): Grammars and Automata for String Processing: From Mathematics and Computer Science to Biology, and Back. Taylor and Francis, London (2003)
23. O'Garra, A. Cytokines induce the development of functionally heterogeneous T helper cell subsets. Immunity 8 (1998) 275-283
24. Sali, A., Glaeser, R., Earnest, T., Baumeister, W. From words to literature in structural proteomics. Nature 422 (2003) 216-225
25. Salomaa, A., Jewels of Formal Language Theory. Computer Science Press, Rockville (1981)
26. Special Focus Area: Engineering Tissue Constructs. DARPA BAA 01-42 Addendum 8 (2002)
27. Stepney, S., Clark, J., Tyrell, A., Johnson, C., Timmis, J., Partridge, D., Adamatzky, A., Smith, R. Journeys in Non-Classical Computation: A Grand Challenge for Computing Research [http://www.nesc.ac.uk/esi/events/ Grand_Challenges/] (2003)
28. Tarakanov, A., Goncharova, L., Gupalova, T., Kvachev, S., Sukhorukov, A. Immunocomputing for bioarrays. The 1st Int. Conf. on Artificial Immune Systems (ICARIS'02). Univ. of Kent at Canterbury, UK (2002) 32-40
29. Tarakanov, A.O., Skormin, V.A., Sokolova, S.P. Immunocomputing: Principles and Applications. Springer-Verlag, New York (2003)
30. Tarakanov, A.O., Tarakanov, Y.A. A comparison of immune and neural computing for two real-life tasks of pattern recognition. Lecture Notes in Computer Science, Vol. 3239. Springer-Verlag, Berlin (2004) 236-249
31. Tesniere, L. Elements de Syntaxe Structurale. Klincksieck, Paris (1979)
32. Vilcek, J, Feldmann, M. Historical review: Cytokines as therapeutics and targets of therapeutics. Trends Pharmacol. Sci. 25 (2004) 201-209
33. Wall, L., Burke, F., Caroline, B., Smyth, J., Balkwill, F. IFN-gamma induces apoptosis in ovarian cancer cells in vivo and in vitro. Clinical Cancer Research 9 (2003) 2487-2496
34. Yu, H., Rifai, N. High-sensitivity C-reactive protein and atherosclerosis: from theory to therapy. Clinical Biochemistry 33/8 (2000) 601-610