Ice age cloning - Comparison of the Quaternary evolutionary histories of sexual and clonal forms of spiny loaches (Cobitis; Teleostei) using the analysis of mitochondrial DNA variation

Molecular Ecology

Volumn 14, Issue 10, 2005, Pages 2991-3004

  Janko, K ^a   Culling, M A ^b   Rab P ^a,c,d   Kotlik P ^a  

^a INSTITUTE OF ANIMAL PHYSIOLOGY AND GENETICS   (Czech Republic)

^b UNIVERSITY OF EAST ANGLIA   (United Kingdom)

^c Joint Laboratory of Genetics Physiology and Reproduction of Fishes of IAPG CAS   (Czech Republic)

^d UNIVERSITY OF SOUTH BOHEMIA   (Czech Republic)

Author keywords

Asexuality; Cobitis; Glacial refuges; Hybridization; Phylogeography

Indexed keywords

COBITIDAE; COBITIS; COBITIS ELONGATOIDES; COBITIS TAENIA; COBITIS TANAITICA; TAENIA; TELEOSTEI;

AMINOACYL TRANSFER RNA; CYTOCHROME B; MITOCHONDRIAL DNA; TRNA, GLUTAMIC ACID; TRNA, GLUTAMIC ACID-;

ANIMAL; ANIMAL DISEASE; ARTICLE; ASEXUAL REPRODUCTION; CHEMISTRY; CYPRINIFORMES; EUROPE; FEMALE; GENETIC VARIABILITY; GENETICS; MALE; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ALIGNMENT;

ANIMALS; BASE SEQUENCE; CYPRINIFORMES; CYTOCHROMES B; DNA, MITOCHONDRIAL; EUROPE; EVOLUTION, MOLECULAR; FEMALE; MALE; PHYLOGENY; POLYMERASE CHAIN REACTION; REPRODUCTION, ASEXUAL; RNA, TRANSFER, AMINO ACYL; SEQUENCE ALIGNMENT; VARIATION (GENETICS);

EID: 26944445866     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2005.02583.x     Document Type: Article

References (66)

1. Adams JM Faure H ( 1997) Preliminary vegetation maps of the world since the last glacial maximum: an aid to archaeological understanding. Journal of Archaeological Science, 4, 623 647.
2. Avise JC ( 2000) Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge, Massachusetts.
3. Avise JC Quattro JM Vrijenhoek RC ( 1992) Molecular clones within organismal clones. Evolutionary Biology, 26, 225 246.
4. Alves MJ Coelho MM Collares-Pereira MJ ( 1998) Diversity in reproductive modes of females of the Rutillus alburnoides complex (Teleostei, Cyprinidae): a way to avoid genetic constraints of uniparentalism. Molecular Biology and Evolution, 15, 1233 1242.
5. Alves MJ Coelho MM Collares-Pereira MJ ( 2001) Evolution in action through hybridisation and polyploidy in an Iberian freshwater fish: a genetic review. Genetica, 111, 375 385.
6. Bǎnǎrescu P ( 1990) Zoogeography of Fresh Waters. Vol. 1 : General Distribution and Dispersal of Fresh Water Animals. AULA-Verlag, Wiesbaden.
7. Bobyrev A Burmensky V Vasil'ev VP Kriksunov E Lebedeva E ( 2003) Coexistence of triploid and diploid forms of spined loach, Cobitis taenia: a model-based approach. Folia Biologica-Krakow, 51 ( Suppl. S 55 60.
8. Bohlen J Ráb P ( 2001) Species and hybrid richness in spined loaches of the genus Cobitis L.Teleostei: Cobitidae.), with a checklist of European forms and suggestions for their conservation. Journal of Fish Biology, 59 ( Suppl. A 79 85.
9. Bohlen J Ráb P Šlechtová V Rábová M Ritterbusch D Freyhof J ( 2002) Hybridogeneous biotypes in spined loaches (genus Cobitis) in Germany with implications for the conservation of such fish complexes. In: Freshwater Fish Conservation - Options for the Future (eds Collares-Pereira MJ Cowx I Coelho MM), pp. 311 328. Fishing News Books, Blackwell Science, Oxford.
10. Briolay JN Galtier N Brito RM Bouvet Y ( 1998) Molecular phylo-geny of Cyprinidae inferred from cytochrome b DNA sequences. Molecular Phylogenetics and Evolution, 9, 100 108.
11. Clement M Posada D Crandall KA ( 2000) tcs: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657 1659.
12. Culling M Janko K Boron A Vasil'ev VP Coté IM Hewitt GM ( submitted manuscript) European colonization of the spined loach Cobitis taenia from Ponto-Caspian refugia based on mitochondrial DNA variation. Molecular Ecology, (in review).
13. Cunha C Coelho MM Carmona J Doadrio I ( 2004) Phylogeographical insights into the origins of the Squalius alburnoides complex via multiple hybridization events. Molecular Ecology, 13, 2807 2817.
14. Doadrio I Carmona JA Machordom A ( 2002) Haplotype diversity and phylogenetic relationships among the Iberian barbels (Barbus, Cyprinidae) reveal two evolutionary lineages. Journal of Heredity, 93, 140 147.
15. Donner J ( 1995) The Quarternary History of Scandinavia. Cambridge University Press, Cambridge.
16. Durand JD Persat H Bouvet Y ( 1999) Phylogeography and postglacial dispersion of the chub (Leuciscus cephalus) in Europe. Molecular Ecology, 8, 989 997.
17. Felsenstein J ( 1974) The evolutionary advantage of recombination. Genetics, 78, 737 756.
18. Flajšhans M Vajcova V ( 2000) Odd ploidy levels in sturgeons suggest a backcross of interspecific hexaploid sturgeon hybrids to evolutionarily tetraploid and/or octaploid parental species. Folia Zoologica, 49, 133 138.
19. Hamilton WD ( 1980) Sex versus non-sex versus parasite. Oikos, 35, 282 290.
20. Hamilton WD Axelrod R Tanese R ( 1990) Sexual reproduction as an adaptation to resist parasites (a review). Proceedings of National Academy of Sciences, USA, 87, 3566 3573.
21. Hasegawa M Kishino H Yano T ( 1985) Dating of the human-ape splitting by molecular clock of mitochondrial DNA. J. Mol. Evol, 21, 160 174.
22. Hellriegel B Reyer HU ( 2000) Factors influencing the composition of mixed populations of a hemiclonal hybrid and its sexual host. Journal of Evolutionary Biology, 13, 906 918.
23. Hewitt GM ( 2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907 913.
24. Hotz HH Mancino G Bucci-Innocenti S Ragghionti M Berger L Uzzell T ( 1985) Rana ridibunda varies geographically in inducing clonal gametogenesis in interspecies hybrids. Journal of Experimental Zoology, 236, 199 210.
25. Howard RS Lively CM ( 1998) The maintenance of sex by parasitism and mutation accumulation under epistatic fitness functions. Evolution, 52, 604 610.
26. Hubbs CL Hubbs LC ( 1932) Apparent parthenogenesis in nature, in a form of fish of hybrid origin. Science, 76, 628 630.
27. Janko K Kotlík P Ráb P ( 2003) Evolutionary history of asexual hybrid loaches (Cobitis: Teleostei) inferred from phylogenetic analysis of mitochondrial DNA variation. Journal of Evolutionary Biology, 16, 1280 1287.
28. Johnson SG Leefe WR ( 1999) Clonal diversity and polyphyletic origins of hybrid and spontaneous parthenogenetic Campeloma (Gastropoda: Viviparidae) from the south-eastern United States. Journal of Evolutionary Biology, 12, 1056 1068.
29. Judson OP Normark BB ( 1996) Ancient asexual scandals. Trends in Ecology & Evolution, 11, 41 46.
30. Knowles LL Maddison WP ( 2002) Statistical phylogeography. Molecular Ecology, 11, 2623 2635.
31. Kotlík P Berrebi P ( 2001) Phylogeography of the barbel (Barbus barbus) assessed by mitochondrial DNA variation. Molecular Ecology, 10, 2177 2186.
32. Kotlík P Berrebi P ( 2002) Genetic subdivision and biogeography of the Danubian rheophilic barb Barbus petenyi inferred from phylogenetic analysis of mitochondrial DNA variation. Molecular Phylogenetics and Evolution, 24, 10 18.
33. Kotlík P Bogutskaya NG Ekmekci G ( 2004) Circum Black Sea phylogeography of Barbus freshwater fishes: divergence in the Pontic glacial refugium. Molecular Ecology, 13, 87 95.
34. Lynch M ( 1984) Destabilizing hybridization, general-purpose genotypes and geographic parthenogenesis. Quarterly Reviews in Biology, 59, 257 290.
35. Lynch M Bürger R Butcher D Gabriel W ( 1993) The mutational meltdown in asexual populations. Journal of Heredity, 84, 339 344.
36. Moore WS McKay FE ( 1971) Coexistence in unisexual-bisexual species complexes of Poeciliopsis (Pisces: poeciliidae). Ecology, 52, 791 799.
37. Neigel JE Avise JC ( 1993) Application of a random walk-model to geographic distributions of animal mitochondrial DNA variation. Genetics, 135, 1209 1220.
38. Neigel JE Ball RM Avise JC ( 1991) Estimation of single generation migration distances from geographic variation in animal mitochondrial DNA. Evolution, 45, 423 432.
39. Nesbø CL Fossheim T Vollestad LA Jakobsen KS ( 1999) Genetic divergence and phylogeographic relationships among European perch (Perca fluviatilis) populations reflect glacial refugia and postglacial colonisation. Molecular Ecology, 8, 1387 1404.
40. Perdices A Doadrio I ( 2001) The molecular systematics and biogeography of the European cobitids based on mitochondrial DNA sequences. Molecular Phylogenetics and Evolution, 19, 468 478.
41. Pongratz N Storhas M Carranza S Michiels NK ( 2003) Phylogeography of competing sexual and parthenogenetic forms of a freshwater flatworm. patterns and explanations. BMC Evolutionary Biology, 3, 23.
42. Posada D Crandall KA ( 1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
43. Posada D Crandal KA Templeton AR ( 2000) geodis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487 488.
44. Quattro JM Avise JC Vrijenhoek RC ( 1991) Molecular evidence for multiple origins of hybridogenetic fish clones.Poeciliopsis, Poeciliidae). Genetics, 127, 391 398.
45. Quattro L Avise JC Vrijenhoek RC ( 1992a) An ancient clonal lineage in fish genus Poeciliopsis. Proceedings of National Academy of Sciences, USA, 89, 348 352.
46. Quattro L Avise JC Vrijenhoek RC ( 1992b) Mode of origin and sources of genotypic diversity in triploid gynogenetic fish clones (Poeciliopsis, Poeciliidae). Genetics, 130, 621 628.
47. Rózsa L ( 1999) Influencing random transmission is a neutral character in hosts. Journal of Parasitology, 85, 1032 1035.
48. Saat TV ( 1991) Reproduction of the diploid and polyploid spinous loach (Cobitis, Teleostei). Oocyte maturation and fertilization in the triploid form. Soviet Journal of Developmental Biology, 22, 332 338.
49. Saillard J Forster P Lynnerup N Bandelt HJ Norby S ( 2000) mtDNA variation among Greenland eskimos: the edge of the Beringian expansion. American Journal of Human Genetics, 67, 718 726.
50. Sneath PHA Sokal RR ( 1973) Numerical Taxonomy. Freeman, San Francisco.
51. Spolsky CM Phyllips CA Uzzell T ( 1992) Antiquity of clonal salamander lineages revealed by mitochondrial DNA. Nature, 356, 706 708.
52. Swofford DL ( 1999) paup*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4.0. Sinauer Associates, Sunderland, Massachusetts.
53. Templeton AR ( 1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381 397.
54. Templeton AR ( 2004) Statistical phylogeography: methods of evaluating and minimizing inference errors. Molecular Ecology, 13, 789 809.
55. Templeton AR Sing CF ( 1993) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659 669.
56. Templeton AR Boerwinkle E Sing CF ( 1987) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping. I. Basic theory and an analysis of alcohol dehydrogenase activity in Drosophila. Genetics, 117, 343 351.
57. Templeton AR Crandall KA Sing CF ( 1992) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619 633.
58. Templeton AR Routman E Phillips CA ( 1995) Separating population structure from population history: a cladistic analysis of the geographic distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics, 140, 767 782.
59. Tsigenopoulos CS Berrebi P ( 2000) Molecular phylogeny of north Mediterranean freshwater barbs (genus Barbus: Cyprinidae) inferred from cytochrome b sequences: biogeographic and systematic implications. Molecular Phylogenetics and Evolution, 14, 165 179.
60. Vasil'eva ED Kuga TI ( 2004) Craniological features as available diagnostic characters for the Crimean gudgeon (Gobio, Cyprinidae). Folia Zoologica, in press.
61. Vrijenhoek RC ( 1979) Factors affecting clonal diversity and coexistence. American Zoologist, 19, 787 797.
62. Vrijenhoek RC ( 1993) The origin and evolution of clones versus the maintenance of sex in Poeciliopsis. Journal of Heredity, 84, 388 395.
63. Vrijenhoek RC ( 1998) Clonal organisms and the benefits of sex. In: Advances in Molecular Ecology ( ed. Carvalho R), pp. 151 172. IOS Press, Amsterdam, The Netherlands.
64. Vrijenhoek RC Dawley RM Cole CJ Bogart JP ( 1989) A list of the known unisexual vertebrates. In: Evolution and Ecology of Unisexual Vertebrates (eds Dawley RM Bogart JP), pp. 19 23. Bulletin 466, New York State Museum, Albany, New York.
65. Weissman A ( 1889) Essays Upon Heredity and Kindred Biological Problems. Claredon Press, Owford.
66. Wheeler A ( 1977) The origin and distribution of the freshwater fishes of the British Isles. Journal of Biogeography, 4, 1 24.