Detection and automatic repair of nucleotide base-pair mutations by coherent light

Journal of the American Chemical Society

Volumn 127, Issue 41, 2005, Pages 14434-14438

  Thanopulos, Ioannis ^a   Shapiro, Moshe ^a,b  

^a UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

HYDROGEN BONDS; LASER PULSES; MUTAGENESIS; ORGANIC ACIDS;

DOUBLE PROTON TRANSFER; PHASE-COHERENT OPTICAL TECHNIQUES;

COHERENT LIGHT;

2 PYRIDONE 2 HYDROXYPYRIDINE; 2 PYRIDONE DERIVATIVE; NUCLEOTIDE; UNCLASSIFIED DRUG;

ARTICLE; BASE PAIRING; HYDROGEN BOND; LIGHT EXPOSURE; MUTATIONAL ANALYSIS; POLARIMETRY; PROTON TRANSPORT;

BASE PAIRING; COMPUTER SIMULATION; DNA; DNA REPAIR; HYDROGEN BONDING; IMAGE PROCESSING, COMPUTER-ASSISTED; LIGHT; MODELS, CHEMICAL; MUTATION; NUCLEOTIDES; OPTICS; PROTONS;

EID: 26844467389     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja053396t     Document Type: Article

References (40)

1. Jeffrey, G.; Saenger, W. Hydrogen Bonding in Biological Structures; Springer: Berlin, 1991.
2. Lehninger, A.; Nelson, D.; Cox, M. Principles of Biochemistry; Worth Publishers: New York, 1987.
3. Nir, E.; Kleinermanns, K.; de Vries, M. Nature 2000, 408, 949.
4. Nir, E.; Kleinermanns, K.; Grace, L.; de Vries, M. J. Phys. Chem. A 2001, 105, 5106.
5. Rini, M.; Magnes, B.-Z.; Pines, E.; Nibbering, E. Science 2003, 301, 349.
6. Folmer, D.; Wisniewski, E.; Hurley, S.; Castlemann, A., Jr. Proc. Natl. Acad. Sci. U.S.A. 1999, 96, 12980.
7. Catalán, J.; Pérez, P.; del Valle, J.; de Paz, J.; Kasha, M. Proc. Natl. Acad. Sci. U.S.A. 2004, 101, 419.
8. Voegel, J.; Benner, S. J. Am. Chem. Soc. 1994, 116, 6929.
9. Guallar, V.; Douhal, A.; Moreno, M.; Lluch, J. J. Phys. Chem. A 1999, 103, 6251.
10. Borst, D.; Roscioli, J.; Pratt, D.; Florio, G.; Zwier, T.; Müller, A.; Leutwyler, S. Chem. Phys. Lett. 2002, 283, 341.
11. Müller, A.; Talbot, F.; Leutwyler, S. J. Chem. Phys. 2001, 115, 5192.
12. Meuwly, M.; Müller, A.; Leutwyler, S. Phys. Chem. Chem. Phys. 2003, 5, 2663.
13. Frey, J.; Müller, A.; Frey, H.-M.; Leutwyler, S. J. Chem. Phys. 2004, 121, 8237.
14. Tautermann, C.; Voegele, A.; Liedl, K. Chem. Phys. Lett. 2003, 292, 47.
15. Smedarchina, Z.; Siebrand, W.; Fernadez-Ramos, A.; Martinez-Nunez, E. Chem. Phys. Lett. 2004, 386, 396.
16. Roscioli, J.; Pratt, D.; Smedarchina, Z.; Siebrand, W.; Fernandez-Ramos, A. J. Chem. Phys. 2004, 120, 11351.
17. Zoete, V.; Meuwly, M. J. Chem. Phys. 2004, 121, 4377.
18. Schultz, T.; Samoylova, E.; Radloff, W.; Hertel, I.; Sobolewski, A.; Domcke, W. Science 2004, 306, 1765.
19. Shapiro, M.; Brumer, P. Principles of the Quantum Control of Molecular Processes; John Wiley & Sons: New Jersey, 2003.
20. Zare, R. Science 1998, 279, 1875.
21. Weinacht, T.; Ahn, J.; Bucksbaum, P. Nature 1999, 397, 233.
22. Meshulach, D.; Silberberg, Y. Nature 1998, 396, 239.
23. Brixner, T.; Bamrauer, N.; Nicklaus, P.; Gerber, G. Nature 2001, 414, 57.
24. Rabitz, H.; Hsieh, M.; Rosenthal, C. Science 2004, 303, 1998.
25. Herek, J.; Wohlleben, W.; Cogdell, R.; Zeidler, D.; Motzkus, M. Nature 2002, 417, 533.
26. Oreg, J.; Hioe, F.; Eberly, J. Phys. Rev. A 1984, 29, 690.
27. Gaubatz, U.; Rudecki, P.; Schiemann, S.; Bergmann, K. J. Chem. Phys. 1990, 92, 5363.
28. Vitanov, N.; Fleischhauer, M.; Shore, B.; Bergmann, K. Adv. At. Mol. Opt. Phys. 2001, 46, 55.
29. Kral, P.; Shapiro, M. Phys. Rev. Lett. 2001, 87, 183002.
30. Kral, P.; Thanopulos, I.; Shapiro, M.; Cohen, D. Phys. Rev. Lett. 2003, 90, 033001.
31. Thanopulos, I.; Krai, P.; Shapiro, M. J. Phys. Chem. 2003, 119, 5105.
32. Miller, W.; Ruf, B.; Chang, Y.-T. J. Phys. Chem. 1988, 89, 6298.
33. Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Zakrzewski, V. G.; Montgomery, J. A., Jr.; Stratmann, R. E.; Burant, J. C.; Dapprich, S.; Millam, J. M.; Daniels, A. D.; Kudin, K. N.; Strain, M. C.; Farkas, O.; Tomasi, J.; Barone, V.; Cossi, M.; Cammi, R.; Mennucci, B.; Pomelli, C.; Adamo, C.; Clifford, S.; Ochterski, J.; Petersson, G. A.; Ayala, P. Y.; Cui, Q.; Morokuma, K.; Malick, D. K.; Rabuck, A. D.; Raghavachari, K.; Foresman, J. B.; Cioslowski, J.; Ortiz, J. V.; Stefanov, B. B.; Liu, G.; Liashenko, A.; Piskorz, P.; Komaromi, I.; Gomperts, R.; Martin, R. L.; Fox, D. J.; Keith, T.; Al-Laham, M. A.; Peng, C. Y.; Nanayakkara, A.; Gonzalez, C.; Challacombe, M.; Gill, P. M. W.; Johnson, B. G.; Chen, W.; Wong, M. W.; Andres, J. L.; Head-Gordon, M.; Replogle, E. S.; Pople, J. A. Gaussian 98, revision A.11; Gaussian, Inc.: Pittsburgh, PA, 2001.
34. -1 normal mode of the equilibrium configuration A or B.
35. Löwdin, P.-O. Rev. Mod. Phys. 1963, 35, 724.
36. a, denotes the Cartesian coordinate vector of the a-th atom in this frame.
37. Oh, D.; King, B.; Boxer, S.; Hanawalt, P. Proc. Natl. Acad. Sci. U.S.A. 2001, 98, 11271.
38. Knauert, M.; Glazer, P. Hum. Mol. Genet. 2001, 10, 2243.
39. Light, J.; Carrington, T., Jr. Adv. Chem. Phys. 2000, 114, 263.
40. Bunker, P.; Jensen, P. Molecular Symmetry and Spectroscopy, 2nd ed.; NRC Research Press: Ottawa, 1998.