High-resolution physical mapping reveals that the apospory-specific genomic region (ASGR) in Cenchrus ciliaris is located on a heterochromatic and hemizygous region of a single chromosome

Theoretical and Applied Genetics

Volumn 111, Issue 6, 2005, Pages 1042-1051

  Akiyama, Yukio ^a   Hanna, Wayne W ^a   Ozias Akins, Peggy ^a  

^a UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; CONDENSATION; MAPPING;

APOSPORY-SPECIFIC GENOMIC REGION (ASGR); CARRIER CHROMOSOMES; GENOTYPES; PHYSICAL MAPPING;

CHROMOSOMES;

ARTICLE; BACTERIAL ARTIFICIAL CHROMOSOME; CENCHRUS; CHROMOSOME MAP; COMPARATIVE STUDY; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; HETEROCHROMATIN; IMAGE PROCESSING; PLANT CHROMOSOME; REPRODUCTION;

CENCHRUS; CHROMOSOMES, ARTIFICIAL, BACTERIAL; CHROMOSOMES, PLANT; HETEROCHROMATIN; IMAGE PROCESSING, COMPUTER-ASSISTED; IN SITU HYBRIDIZATION, FLUORESCENCE; PHYSICAL CHROMOSOME MAPPING; REPRODUCTION;

CENCHRUS; CENCHRUS CILIARIS; PENNISETUM CILIARE; PENNISETUM GLAUCUM; PENNISETUM SQUAMULATUM;

EID: 26444601970     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-005-0020-5     Document Type: Article

References (37)

1. Akiyama Y, Conner JA, Goel S, Morishige DT, Mullet JE, Hanna WW, Ozias-Akins P (2004) High-resolution physical mapping in Pennisetum squamulatum reveals extensive chromosomal heteromorphism of the genomic region associated with apomixis. Plant Physiol 134:1733-1741
2. Arumuganathan K, Earle ED (1991) Nuclear DNA content of some important plant species. Plant Mol Biol Rep 9:208-218
3. Bashaw EC (1962) Apomixis and sexuality in buffelgrass. Crop Sci 2:412-415
4. Cold Spring Harbor Laboratory, Washington University Genome Sequencing Center and PE Biosystems Arabidopsis Sequencing Consortium (2000) The complete sequence of a heterochromatic island from a higher eukaryote. Cell 100:377-386
5. Dujardin M, Hanna WW (1989) Developing apomictic pearl millet - characterization of a BC3 plant. J Genet Breed 43:145-151
6. Fu H, Zheng Z, Dooner HK (2002) Recombination rates between adjacent genic and retrotransposon regions in maize vary by 2 orders of magnitude. Proc Natl Acad Sci USA 99:1082-1087
7. Fukui K (1996) Plant chromosome at mitosis. In: Fukui K, Nakayama S (eds) Plant chromosomes laboratory methods. CRC Press, Boca Ration, FL, pp 1-17
8. Goel S, Chen Z, Conner JA, Akiyama Y, Hanna WW, Ozias-Akins P (2003) Delineation by fluorescence in situ hybridization of a single hemizygous chromosomal region associated with aposporous embryo sac formation in Pennisetum squamulatum and Cenchrus ciliaris. Genetics 163:1069-1082
9. Grimanelli D, Leblanc O, Espinosa E, Perotti E, Gonzalex de Leon D, Savidan Y (1998) Mapping diplosporous apomioxis in tetraploid Tripsacum: one gene or several genes? Heredity 80:33-39
10. Grimanelli D, Leblanc O, Perotti E, Grossniklaus U (2001) Developmental genetics of gametophytic apomixis. Trends Genet 17:597-604
11. Gustine DL, Sherwood RT, Huff DR (1997) Apospory-linked molecular markers in buffelgrass. Crop Sci 37:947-951
12. Ingham LD, Hanna WW, Baier JW, Hannah LC (1993) Origin of the main class of repetitive DNA within selected Pennisetum species. Mol Gen Genet 238:350-356
13. Islam-Faridi MN, Childs KL, Klein PE, Hodnett G, Menz MA, Klein RR, Rooney WL, Mullet JE, Stelly DM, Price HJ (2002) A molecular cytogenetic map of sorghum chromosome 1. Fluorescence in situ hybridization analysis with mapped bacterial artificial chromosomes. Genetics 161:345-353
14. Jessup RW, Burson BL, Burow O, Wang YW, Chang C, Li Z, Paterson AH, Hussey MA (2002) Disomic inheritance, suppressed recombination, and allelic interactions govern apospory in buffelgrass as revealed by genome mapping. Crop Sci 42:1688-1694
15. Jessup RW, Burson BL, Burow O, Wang YW, Chang C, Li Z, Paterson AH, Hussey MA (2003) Segmental allotetraploidy and allelic interactions in buffelgrass (Pennisetum ciliare (L.) Link syn. Cenchrus ciliaris L.) as revealed by genome mapping. Genome 46:304-313
16. de Jong JH, Fransz P, Zabel P (1999) High resolution FISH in plants-techniques and applications. Trends Plant Sci 4:258-263
17. Kamm A, Schmidt T, Heslop-Harrison JS (1994) Molecular and physical organization of highly repetitive, undermethylated DNA from Pennisetum glaucum. Mol Gen Genet 244:420-425
18. Kato S, Fukui K (1998) Condensation pattern (CP) analysis of plant chromosomes by an improved chromosome image analysing system, CHIAS III. Chromosome Res 6:473-479
19. Koltunow A (1993) Apomixis: embryo sacs and embryos formed without meiosis or fertilization in ovules. Plant Cell 5:1425-1437
20. Künzel G, Korzun L, Meister A (2000) Cytologically integrated physical restriction fragment length polymorphism maps for the barley genome based on translocation breakpoints. Genetics 154:397-412
21. Kurata N, Nonomura K, Harushima Y (2002) Rice genome organization: the centromere and genome interactions. Ann Bot 90:427-435
22. Labombarda P, Busti A, Caceres ME, Pupilli F, Arcioni S (2002) An AFLP marker tightly linked to apomixis reveals hemizygosity in a portion of the apomixis-controlling locus in Paspalum simplex. Genome 45:513-519
23. Liu YG, Nagaki K, Fujita M, Kawaura K, Uozumi M, Ogihara Y (2000) Development of an efficient maintenance and screening system for large-insert genomic DNA libraries of hexaploid wheat in a transformation-competent artificial chromosome (TAC) vector. Plant J 23:687-695
24. Mroczek RJ, Dawe RK (2003) Distribution of retroelements in centromeres and neocentromeres of maize. Genetics 165:809-819
25. Nogler GA (1984) Gametophytic apomixis. In: Johri BM (ed) Embryology of angiosperms. Spring-Verlag, Berlin, Germany, pp 448-452
26. Ohmido N, Kijima K, Akiyama Y, de Jong JH, Fukui K (2000) Quantification of total genomic DNA and selected repetitive sequences reveals concurrent changes in different DNA families in indica and japonica rice. Mol Gen Genet 263:388-394
27. Ozias-Akins P, Roche D, Hanna WW (1998) Tight clustering and hemizygosity of apomixis-linked molecular markers in Pennisetum squamulatum implies genetic control of apospory by a divergent locus that may have no allelic form in sexual genotypes. Proc Natl Acad Sci USA 95:5127-5132
28. Ozias-Akins P, Akiyama Y, Hanna WW (2003) Molecular characterization of the genomic region linked with apomixis in Pennisetum/Cenchrus. Funct Integr Gen 3:94-104
29. Roche D, Cong P, Chen Z, Hanna WW, Gustine DL, Sherwood RT, Ozias-Akins P (1999) Short communication: an apospory-specific genomic region is conserved between buffelgrass (Cenchrus ciliaris L.) and Pennisetum squamulatum fresen. Plant J 19:203-208
30. Roche D, Conner JA, Budiman MA, Frisch D, Wing R, Hanna WW, Ozias-Akins P (2002) Construction of BAC libraries from two apomictic grasses to study the microcolinearity of their apospory-specific genomic regions. Theor Appl Genet 104:804-812
31. Sherwood RT, Berg CC, Young BA (1994) Inheritance of apospory in buffelgrass. Crop Sci 34:1490-1494
32. Tanksley SD, Ganal MW, Prince JP, de Vicente MC, Bonierbale MW, Broun P, Fulton TM, Giovannoni JJ, Grandillo S, Martin GB, Messeguer R, Miller JC, Miller L, Paterson AH, Pineda O, Roder MS, Wing RA, Wu W, Young ND (1992) High density molecular linkage maps of the tomato and potato genomes. Genetics 132:1141-1160
33. Visser NC, Spies JJ, Venter HJT (1998a) Aneuploidy in Cenchrus ciliaris (Poaseae, Panicoideae, Paniceae): truth or fiction?. S Afr J Bot 64:337-345
34. Visser NC, Spies JJ, Venter HJT (1998b) Meiotic chromosome behaviour in Cenchrus ciliaris (Poaceae: Panicoideae). Bothalia 28:83-90
35. Yao H, Zhou Q, Li J, Smith H, Yandeau M, Nikolau BJ, Schnable PS (2002) Molecular characterization of meiotic recombination across the 140-kb multigenic a1-sh2 interval of maize. Proc Natl Acad Sci USA 99:6157-6162
36. Zhong XB, de Jong, JH, Zabel P (1996) Preparation of tomato meiotic pachytene and mitotic metaphase chromosomes suitable for fluorescence in situ hybridization (FISH). Chromosome Res 4:24-28
37. Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, Dawe RK (2002) Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. Plant Cell 14:2825-2836