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Volumn 22, Issue 11, 2005, Pages 2142-2146

The presence of a haloarchaeal type tyrosyl-tRNA synthetase marks the opisthokonts as monophyletic

Author keywords

Ancient gene transfer; Eukaryotic evolution; Opisthokonts; Tyrosyl tRNA synthetase

Indexed keywords

TYROSINE TRANSFER RNA LIGASE;

EID: 26444543426     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msi221     Document Type: Article
Times cited : (35)

References (36)
  • 1
    • 10344246580 scopus 로고    scopus 로고
    • Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids
    • Andersson, J. O., S. W. Sarchfield, and A. J. Roger. 2005. Gene transfers from nanoarchaeota to an ancestor of diplomonads and parabasalids. Mol. Biol. Evol. 22:85-90.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 85-90
    • Andersson, J.O.1    Sarchfield, S.W.2    Roger, A.J.3
  • 2
    • 0027138675 scopus 로고
    • Animals and fungi are each other's closest relatives: Congruent evidence from multiple proteins
    • USA
    • Baldauf, S. L., and J. D. Palmer. 1993. Animals and fungi are each other's closest relatives: congruent evidence from multiple proteins. Proc. Natl. Acad. Sci. USA 90:11558-11562.
    • (1993) Proc. Natl. Acad. Sci. , vol.90 , pp. 11558-11562
    • Baldauf, S.L.1    Palmer, J.D.2
  • 3
    • 0034602344 scopus 로고    scopus 로고
    • A kingdom-level phylogeny of eukaryotes based on combined protein data
    • Baldauf, S. L., A. J. Roger, I. Wenk-Siefert, and W. F. Doolittle. 2000. A kingdom-level phylogeny of eukaryotes based on combined protein data. Science 290:972-977.
    • (2000) Science , vol.290 , pp. 972-977
    • Baldauf, S.L.1    Roger, A.J.2    Wenk-Siefert, I.3    Doolittle, W.F.4
  • 4
    • 23044494638 scopus 로고    scopus 로고
    • An emerging phylogenetic core of Archaea: Phylogenies of transcription and translation machineries converge following addition of new genome sequences
    • Brochier, C., P. Forterre, and S. Gribaldo. 2005. An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences. BMC Evol. Biol. 5:36.
    • (2005) BMC Evol. Biol. , vol.5 , pp. 36
    • Brochier, C.1    Forterre, P.2    Gribaldo, S.3
  • 5
    • 0030788417 scopus 로고    scopus 로고
    • Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases
    • Brown, J. R., F. T. Robb, R. Weiss, and W. F. Doolittle. 1997. Evidence for the early divergence of tryptophanyl- and tyrosyl-tRNA synthetases. J. Mol. Evol. 45:9-16.
    • (1997) J. Mol. Evol. , vol.45 , pp. 9-16
    • Brown, J.R.1    Robb, F.T.2    Weiss, R.3    Doolittle, W.F.4
  • 6
    • 0001875826 scopus 로고
    • The origin of fungi and pseudofungi
    • A. D. M. Rayer, C. M. Brasier, and D. Moore, eds. Cambridge University Press, Cambridge
    • Cavalier-Smith, T. 1987. The origin of fungi and pseudofungi. Pp. 339-353 in A. D. M. Rayer, C. M. Brasier, and D. Moore, eds. Evolutionary biology of the fungi. Cambridge University Press, Cambridge.
    • (1987) Evolutionary Biology of the Fungi , pp. 339-353
    • Cavalier-Smith, T.1
  • 7
    • 0036155782 scopus 로고    scopus 로고
    • The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification
    • _. 2002. The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification. Int. J. Syst. Evol. Microbiol. 52:7-76.
    • (2002) Int. J. Syst. Evol. Microbiol. , vol.52 , pp. 7-76
  • 9
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: Multiple sequence alignment with high accuracy and high throughput
    • Edgar, R. C. 2004. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32:1792-1797.
    • (2004) Nucleic Acids Res. , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 10
    • 0003437299 scopus 로고    scopus 로고
    • Distributed by the author, Department of Genome Sciences, University of Washington, Seattle
    • Felsenstein, J. 2004. PHYLIP (phylogenetic inference package). Version 3.6. Distributed by the author, Department of Genome Sciences, University of Washington, Seattle.
    • (2004) PHYLIP (Phylogenetic Inference Package). Version 3.6
    • Felsenstein, J.1
  • 13
    • 0033152043 scopus 로고    scopus 로고
    • Horizontal gene transfer: Pitfalls and promises
    • Gogarten, J. P., R. D. Murphey, and L. Olendzenski. 1999. Horizontal gene transfer: pitfalls and promises. Biol. Bull. 196:359-361.
    • (1999) Biol. Bull. , vol.196 , pp. 359-361
    • Gogarten, J.P.1    Murphey, R.D.2    Olendzenski, L.3
  • 14
    • 23944499633 scopus 로고    scopus 로고
    • Horizontal gene transfer, genome innovation and evolution
    • Gogarten, J. P., and J. P. Townsend. 2005. Horizontal gene transfer, genome innovation and evolution. Nat. Rev. Microbiol. 3:679-687.
    • (2005) Nat. Rev. Microbiol. , vol.3 , pp. 679-687
    • Gogarten, J.P.1    Townsend, J.P.2
  • 15
    • 0242578620 scopus 로고    scopus 로고
    • A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
    • Guindon, S., and O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52:696-704.
    • (2003) Syst. Biol. , vol.52 , pp. 696-704
    • Guindon, S.1    Gascuel, O.2
  • 17
    • 0024358140 scopus 로고
    • Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes
    • USA
    • Iwabe, N., K. Kuma, M. Hasegawa, S. Osawa, and T. Miyata. 1989. Evolutionary relationship of archaebacteria, eubacteria, and eukaryotes inferred from phylogenetic trees of duplicated genes. Proc. Natl. Acad. Sci. USA 86:9355-9359.
    • (1989) Proc. Natl. Acad. Sci. , vol.86 , pp. 9355-9359
    • Iwabe, N.1    Kuma, K.2    Hasegawa, M.3    Osawa, S.4    Miyata, T.5
  • 18
    • 0029876868 scopus 로고    scopus 로고
    • Evolutionary relationships of eukaryotic kingdoms
    • Kumar, S., and A. Rzhetsky. 1996. Evolutionary relationships of eukaryotic kingdoms. J. Mol. Evol. 42:183-193.
    • (1996) J. Mol. Evol. , vol.42 , pp. 183-193
    • Kumar, S.1    Rzhetsky, A.2
  • 20
    • 18844442298 scopus 로고    scopus 로고
    • Comment on "The 1.2-megabase genome sequence of Mimivirus"
    • Moreira, D., and P. Lopez-Garcia. 2005. Comment on "The 1.2-megabase genome sequence of Mimivirus". Science 308:1114-1115.
    • (2005) Science , vol.308 , pp. 1114-1115
    • Moreira, D.1    Lopez-Garcia, P.2
  • 21
    • 0034682335 scopus 로고    scopus 로고
    • Lateral gene transfer and the nature of bacterial innovation
    • Ochman, H., J. G. Lawrence, and E. A. Groisman. 2000. Lateral gene transfer and the nature of bacterial innovation. Nature 405:299-304.
    • (2000) Nature , vol.405 , pp. 299-304
    • Ochman, H.1    Lawrence, J.G.2    Groisman, E.A.3
  • 22
    • 17744379783 scopus 로고    scopus 로고
    • The Ophisthokonta and the Ecdysozoa may not be clades: Strong support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa
    • Philip, G. K., C. J. Creevey, and J. O. McInerney. 2005. The Ophisthokonta and the Ecdysozoa may not be clades: strong support for the grouping of plant and animal than for animal and fungi and stronger support for the Coelomata than Ecdysozoa. Mol. Biol. Evol. 22:1175-1184.
    • (2005) Mol. Biol. Evol. , vol.22 , pp. 1175-1184
    • Philip, G.K.1    Creevey, C.J.2    McInerney, J.O.3
  • 24
    • 0030053586 scopus 로고    scopus 로고
    • Evidence that two present-day components needed for the genetic code appeared after nucleated cells separated from eubacteria
    • USA
    • Ribas de Pouplana, L., M. Frugier, C. L. Quinn, and P. Schimmel. 1996. Evidence that two present-day components needed for the genetic code appeared after nucleated cells separated from eubacteria. Proc. Natl. Acad. Sci. USA 93:166-170.
    • (1996) Proc. Natl. Acad. Sci. , vol.93 , pp. 166-170
    • Ribas De Pouplana, L.1    Frugier, M.2    Quinn, C.L.3    Schimmel, P.4
  • 25
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist, F., and J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572-1574.
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 26
    • 0036205377 scopus 로고    scopus 로고
    • TREE-PUZZLE: Maximum likelihood phylogenetic analysis using quartets and parallel computing
    • Schmidt H. A., K. Strimmer, M. Vingron, and A. Haeseler. 2002. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18:502-504.
    • (2002) Bioinformatics , vol.18 , pp. 502-504
    • Schmidt, H.A.1    Strimmer, K.2    Vingron, M.3    Haeseler, A.4
  • 27
    • 19844378209 scopus 로고    scopus 로고
    • Emerging genomic and proteomic evidence on relationships among the animal, plant and fungal kingdoms
    • Stiller, J. W. 2004. Emerging genomic and proteomic evidence on relationships among the animal, plant and fungal kingdoms. Genomics Proteomics Bioinformatics 2:70-76.
    • (2004) Genomics Proteomics Bioinformatics , vol.2 , pp. 70-76
    • Stiller, J.W.1
  • 28
    • 0031574072 scopus 로고    scopus 로고
    • The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D., T. J. Gibson, F. Plewniak, F. Jeanmougin, and D. G. Higgins. 1997. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 15:4876-4882.
    • (1997) Nucleic Acids Res. , vol.15 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 29
    • 0034538854 scopus 로고    scopus 로고
    • An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances
    • Van de Peer, Y., S. L. Baldauf, W. F. Doolittle, and A. Meyer. 2000. An updated and comprehensive rRNA phylogeny of (crown) eukaryotes based on rate-calibrated evolutionary distances. J. Mol. Evol. 51:565-576.
    • (2000) J. Mol. Evol. , vol.51 , pp. 565-576
    • Van De Peer, Y.1    Baldauf, S.L.2    Doolittle, W.F.3    Meyer, A.4
  • 30
    • 0027241482 scopus 로고
    • Monophyletic origins of the metazoa: An evolutionary link with fungi
    • Wainright, P. O., G. Hinkle, M. L. Sogin, and S. K. Stickel. 1993. Monophyletic origins of the metazoa: an evolutionary link with fungi. Science 260:340-342.
    • (1993) Science , vol.260 , pp. 340-342
    • Wainright, P.O.1    Hinkle, G.2    Sogin, M.L.3    Stickel, S.K.4
  • 31
    • 0023184331 scopus 로고
    • Bacterial evolution
    • Woese, C. R. 1987. Bacterial evolution. Microbiol. Rev. 51:221-271.
    • (1987) Microbiol. Rev. , vol.51 , pp. 221-271
    • Woese, C.R.1
  • 32
    • 0037173066 scopus 로고    scopus 로고
    • On the evolution of cells
    • USA
    • _. 2002. On the evolution of cells. Proc. Natl. Acad. Sci. USA 99:8742-8747.
    • (2002) Proc. Natl. Acad. Sci. , vol.99 , pp. 8742-8747
  • 33
    • 0034053846 scopus 로고    scopus 로고
    • Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process
    • Woese, C. R., G. J. Olsen, M. Ibba, and D. Soil. 2000. Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process. Microbiol. Mol. Biol. Rev. 64:202-236.
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , pp. 202-236
    • Woese, C.R.1    Olsen, G.J.2    Ibba, M.3    Soil, D.4
  • 34
    • 0032830481 scopus 로고    scopus 로고
    • Evolution of aminoacyl-tRNA synthetases - Analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events
    • Wolf, Y. I., L. Aravind, N. V. Grishin, and E. V. Koonin. 1999. Evolution of aminoacyl-tRNA synthetases - analysis of unique domain architectures and phylogenetic trees reveals a complex history of horizontal gene transfer events. Genome Res. 9:689-710.
    • (1999) Genome Res. , vol.9 , pp. 689-710
    • Wolf, Y.I.1    Aravind, L.2    Grishin, N.V.3    Koonin, E.V.4
  • 35
    • 0345874732 scopus 로고    scopus 로고
    • Coelomata and not Ecdysozoa: Evidence from genome-wide phylogenetic analysis
    • Wolf, Y. I., I. B. Rogozin, and E. V. Koonin. 2004. Coelomata and not Ecdysozoa: evidence from genome-wide phylogenetic analysis. Genome Res. 14:29-36.
    • (2004) Genome Res. , vol.14 , pp. 29-36
    • Wolf, Y.I.1    Rogozin, I.B.2    Koonin, E.V.3
  • 36
    • 12244257804 scopus 로고    scopus 로고
    • Phylogeny determined by protein domain content
    • USA
    • Yang, S., R. F. Doolittle, and P. E. Bourne. 2005. Phylogeny determined by protein domain content. Proc. Natl. Acad. Sci. USA 102:373-378.
    • (2005) Proc. Natl. Acad. Sci. , vol.102 , pp. 373-378
    • Yang, S.1    Doolittle, R.F.2    Bourne, P.E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.