Gene prediction by syntenic alignment

Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science)

Volumn 3594, Issue , 2005, Pages 246-250

  Adi, Said Sadique ^a   Ferreira, Carlos Eduardo ^a  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

BENCHMARKING; COMPUTER PROGRAMMING; DATABASE SYSTEMS; GENES; HEURISTIC METHODS; DNA; PROBLEM SOLVING; PROTEINS;

COMPARATIVE-BASED HEURISTIC; MOUSE GENOMIC SEQUENCES; PROTEIN-CODING; GENE PREDICTION; GENOMIC DNA; PROTEIN-CODING REGIONS; SYNTENIC ALIGNMENT;

DNA; GENES;

EID: 26444464399     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11532323_34     Document Type: Conference Paper

References (6)

1. Almeida, N.F., Setubal, J.C., Tompa, M.: On the use of don't care regions for protein sequence alignment. IC Technical Reports 99-07 (1999)
2. Batzoglou, S., Pachter, L., Mesirov, J., Berger, B., Lander, E.S.: Human and mouse gene structure: comparative analysis and application to exon prediction. Genome Res. 10 (2000) 950-958.
3. Blayo, P., Rouzé, P., Sagot, M.-F.: Orphan gene finding - An exon assembly approach. Theoretical Computer Science 290 (2003) 1407-1431.
4. Burset, M., Guigó, R.: Evaluation of gene structure prediction programs. Genomics 34 (1996) 353-357.
5. Salzberg, S.L.: A method for identifying splice sites and translational start sites in eukaryotic mRNA. Computer Applications in the Biosciences 13(4) (1997) 365-376.
6. The Mouse Genome Sequencing Consortium: Initial sequencing and comparative analysis of the mouse genome. Nature. 420(6915) (2002) 520-562.