Extent of antigenic diversity in the V3 region of the surface glycoprotein, gp120, of human immunodeficiency virus type 1 group M and consequences for serotyping

Journal of Virology

Volumn 72, Issue 1, 1998, Pages 677-683

  Plantier, Jean Christophe ^a   Le Pogam, Sophie ^a   Poisson, Francis ^a   Buzelay, Laurence ^a   Lejeune, Bernard ^a   Barin, Francis ^a,b  

^a UNIVERSITÉ DE TOURS   (France)

^b CHU BRETONNEAU   (France)

Author keywords

[No Author keywords available]

Indexed keywords

GLYCOPROTEIN GP 120; VIRUS GLYCOPROTEIN;

ARTICLE; CONTROLLED STUDY; HUMAN IMMUNODEFICIENCY VIRUS 1; IMMUNOGENICITY; NONHUMAN; PRIORITY JOURNAL; PROTEIN POLYMORPHISM; SEROTYPING; STRAIN DIFFERENCE; VIRUS STRAIN;

EID: 2642612818     PISSN: 0022538X     EISSN: None     Source Type: Journal    
DOI: 10.1128/jvi.72.1.677-683.1998     Document Type: Article

References (52)

1. Ariyoshi, K., R. Cheingsong-Popov, A. Wilkins, T. Corrah, J. Weber, and H. Whittle. 1996. HIV-1 subtype B in West Africa. Lancet 347:328. (Letter.)
2. Baillou, A., D. Brand, F. Denis, S. M'Boup, R. Chout, A. Goudeau, and F. Barin. 1994. High antigenic cross-reactivity of the V3 consensus sequences of HIV-1 gp120. AIDS Res. Hum. Retroviruses 9:1209-1215.
3. Bandea, C. I., A. Ramos, D. Pieniazek, R. Pascu, A. Tanuri, G. Schochetman, and M. A. Rayfield. 1995. Epidemiologic and evolutionary relationships between Romanian and Brazilian HIV-1 subtype F strains. Emerg. Infect. Dis. 1:91-93.
4. Barin, F., Y. Lahbabi, L. Buzelay, B. Lejeune, A. Baillou-Beaufils, F. Denis, C. Mathiot, S. M'Boup, V. Vithayasai, U. Dietrich, and A. Goudeau. 1996. Diversity of antibody binding to V3 peptides representing consensus sequences of HIV type 1 genotypes A to E: an approach for HIV type 1 serological subtyping. AIDS Res. Hum. Retroviruses 12:1279-1289.
5. Black, S. D., and D. R. Mould. 1991. Development of hydrophobicity parameters to analyze proteins which bear post-or co-translational modifications. Anal. Biochem. 193:72-82.
6. Catasti, P., J. D. Fontenot, E. M. Bradbury, and G. Gupta. 1995. Local and global structural properties of the HIV-MN V3 loop. J. Biol. Chem. 270: 2224-2232.
7. 6a. Cheingsong-Popov, R. Unpublished data.
8. Cheingsong-Popov, R., A. Bobkov, M. M. Garaev, P. Kaleebu, P. Callow, A. Rzhiminova, S. R. Saukhat, N. P. Burdajev, N. D. Kolomijets, and J. Weber. 1993. Identification of human immunodeficiency virus type 1 subtypes and their distribution in the Commonwealth of Independent States (former Soviet Union) by serologic V3 peptide-binding assays and V3 sequence analysis. J. Infect. Dis. 168:292-297.
9. Cheingsong-Popov, R., S. Lister, D. Callow, P. Kaleebu, S. Beddows, J. Weber, and the WHO Network for HIV Isolation and Characterization. 1994. Serotyping HIV type 1 by antibody binding to the V3 loop: relationship to viral genotype. AIDS Res. Hum. Retroviruses 11:1379-1386.
10. Clewley, J. P., C. Arnold, K. L. Barlow, P. R. Grant, and J. V. Parry. 1996. Diverse HIV-1 genetic subtypes in UK. Lancet 347:1487. (Letter.)
11. Delwart, E. L., E. G. Shpaer, F. E. McCutchan, J. Louwagie, M. Grez, H. Rübsamen-Waigmann, and J. I. Mullins. 1993. Genetic relationships determined by a heteroduplex mobility assay: analysis of HIV env genes. Science 262:1257-1261.
12. Delwart, E. L., H. W. Sheppard, B. D. Walker, J. Goudsmit, and J. I. Mullins. 1994. Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J. Virol. 68:6672-6683.
13. Dietrich, U., M. Grez, H. von Briesen, B. Panhans, M. Geissendörfer, H. Kuhnel, J. Maniar, G. Manhambre, W. B. Becker, M. L. B. Bechler, and H. Rübsamen-Waigmann. 1993. Human immunodeficiency virus type 1 strains from India are highly divergent from prototypic African and U.S./European strains but are linked to a South African isolate. AIDS 7:23-27.
14. Fransen, K., A. Buvé, J. N. Nkengasong, M. Laga, and G. van der Groen. 1996. Longstanding presence in Belgians of multiple non-B HIV-1 subtypes. Lancet 347:1403. (Letter.)
15. Gao, F., L. Yue, S. C. Hill, D. L. Robertson, A. H. Graves, M. S. Saag, G. M. Shaw, P. M. Sharp, and B. H. Hahn. 1994. HIV-1 sequence subtype D in the United States. AIDS Res. Hum. Retroviruses 10:625-627.
16. Gao, F., D. L. Robertson, S. G. Morrison, H. Hui, S. Craig, J. Decker, P. N. Fultz, M. Girard, G. M. Shaw, B. H. Hahn, and P. M. Sharp. 1996. The heterosexual human immunodeficiency virus type 1 epidemic in Thailand is caused by an intersubtype (A/E) recombinant of African origin. J. Virol. 70:7013-7029.
17. Ghiara, J. B., E. A. Stura, R. L. Stanlield, A. T. Profy, and I. A. Wilson. 1994. Crystal structure of the principal neutralization site of HIV-1. Science 264: 82-85.
18. Gorny, M. K., J.-Y. Xu, V. Gianakakos, S. Karwoswka, C. Williams, H. W. Sheppard, C. V. Hanson, and S. Zolla-Pazner. 1991. Production of site-selected neutralizing human monoclonal antibodies against the third variable domain of the human immunodeficiency virus type 1 envelope glycoprotein. Proc. Natl. Acad. Sci. USA 88:3238-3242.
19. Gorny, M. K., A. J. Conley, S. Karwoswka, A. Buchbinder, J.-Y. Xu, E. A. Emini, S. Koenig, and S. Zolla-Pazner. 1992. Neutralization of diverse human immunodeficiency virus type 1 variants by an anti-V3 human monoclonal antibody. J. Virol. 66:7538-7542.
20. Gürtler, L. G., P. H. Hauser, J. Eberle, A. von Brunn, S. Knapp, L. Zekeng, J. M. Tsague, and L. Kaptue. 1994. A new subtype of human immunodeficiency virus Type 1 (MVP-5180) from Cameroon. J. Virol. 68:1581-1585.
21. Hahn, B. H., D. L. Robertson, and P. M. Sharp. 1995. Intersubtype recombination in HIV-1 and HIV-2, p. 111-22-111-29. In G. Myers, B. Korber, S. Wain-Hobson, K.-T. Jeang, L. E. Henderson, and G. N. Pavlakis (ed.), Human retroviruses and AIDS 1995: a compilation and analysis of nucleic acid and amino acid sequences. Los Alamos National Laboratory, Los Alamos, N.Mex.
22. Janssens, W., L. Heyndrickx, K. Fransen, J. Motte, M. Peeters, J. N. Nkengasong, P. M. Ndumbe, E. Delaporte, J. L. Perret, C. Atende, P. Piot, and G. van der Groen. 1994. Genetic and phylogenetic analysis of env subtypes G and H in Central Africa. AIDS Res. Hum. Retroviruses 10:877-879.
23. Korber, B. T. M., K. McInnes, R. F. Smith, and G. Myers. 1994. Mutational trends in V3 loop protein sequences observed in different genetic lineages of human immunodeficiency virus type 1. J. Virol. 68:6730-6744.
24. Kostrikis, L. G., E. Bagdades, Y. Cao, L. Zhang, D. Dimitriou, and D. D. Ho. 1995. Genetic analysis of human immunodeficiency virus type 1 strains from patients in Cyprus: identification of a new subtype designated subtype I. J. Virol. 69:6122-6130.
25. Kuiken, C. L., G. Zwart, E. Baan, R. A. Coutinho, J. A. R. van den Hoek, and J. Goudsmit. 1993. Increasing antigenic and genetic diversity of the V3 variable domain of the human immunodeficiency virus envelope protein in the course of the AIDS epidemic. Proc. Natl. Acad. Sci. USA 90:9061-9065.
26. Kunanusont, C., H. M. Foy, J. K. Kreiss, S. Rersk-Ngarm, P. Phanuphak, S. Raktham, C. P. Pau, and N. Young. 1995. HIV-1 subtypes and male-to-female transmission in Thailand. Lancet 345:1078-1083.
27. LaRosa, G. J., J. P. Davide, K. Weinhold, J. A. Waterbury, A. T. Profy, J. A. Lewis, A. J. Langlois, G. R. Dreesman, R. N. Boswell, P. Shadduck, L. H. Holley, M. Karplus, D. P. Bolognesi, T. J. Matthews, E. A. Emini, and S. Putney. 1990. Conserved sequence and structural elements in the HIV-1 principal neutralization determinant. Science 249:932-935.
28. Loussert-Ajaka, I., M. L. Chaix, B. Korber, F. Letourneur, E. Gomas, E. Allen, T. D. Ly, F. Brun-Vézinet, F. Simon, and S. Saragosti. 1995. Variability of human immunodeficiency virus type 1 group O strains isolated from Cameroonian patients living in France. J. Virol. 69:5640-5649.
29. Louwagie, J., E. L. Delwart, J. I. Mullins, F. E. McCutchan, G. Eddy, and D. S. Burke. 1994. Genetic analysis of HIV-1 isolates from Brazil reveals presence of two distinct genetic subtypes. AIDS Res. Hum. Retroviruses 10:561-567.
30. Luo, C. C., C. Tian, D. J. Hu, M. Kai, T. J. Dondero, and X. Zheng. 1995. HIV-1 subtype C in China. Lancet 345:1051-1052.
31. McCutchan, F. E., P. A. Hegerich, T. P. Brennan, P. Phanuphak, P. Singharaj, A. Jugudee, P. W. Berman, A. M. Gray, A. K. Fowler, and D. S. Burke. 1992. Genetic variants of HIV-1 in Thailand. AIDS Res. Hum. Retroviruses 8:1887-1895.
32. Merrifield, R. B. 1963. Solid-phase peptide synthesis. I. The synthesis of a tetrapeptide. J. Am. Chem. Soc. 85:2149-2154.
33. Montpetit, M. 1995. HIV-1 subtype in Canada. AIDS Res. Hum. Retroviruses 11:1421-1422.
34. Moore, J. P., Y. Cao, J. Leu, L. Qui, B. Korber, and D. D. Ho. 1996. Inter- and intraclade neutralization of human immunodeficiency virus type 1: genetic clades do not correspond to neutralization serotypes but partially correspond to gp120 antigenic serotypes. J. Virol. 70:427-444.
35. Morgado, M. G., E. C. Sabino, E. G. Shpaer, V. Bongertz, L. Brigido, M. D. C. Guimaraes, E. A. Castilho, B. Galvao-Castro, J. I. Mullins, R. M. Hendry, and A. Mayer. 1994. V3 region polymorphisms in HIV-1 from Brazil: prevalence of subtype B strains divergent from North American/ European prototype and detection of subtype F. AIDS Res. Hum. Retroviruses 10:569-576.
36. Murphy, E. E., B. Korber, M. C. Georges-Courbot, B. You, A. Pinter, D. Cook, M. P. Kieny, A. Georges, C. Mathiot, F. Barré-Sinoussi, and M. Girard. 1993. Diversity of V3 region sequences of human immunodeficiency viruses type 1 from the Central African Republic. AIDS Res. Hum. Retroviruses 9:997-1006.
37. Myers, G., B. Korber, S. Wain-Hobson, R. F. Smith, and G. N. Pavlakis. 1992. Human retroviruses and AIDS 1992. Los Alamos, NM: a compilation and analysis of nucleic acid and amino acid sequences. Los Alamos National Laboratory, Los Alamos, N.Mex.
38. Myers, G., B. Korber, S. Wain-Hobson, R. F. Smith, and G. N. Pavlakis. 1994. Human retroviruses and AIDS 1994. Los Alamos, NM: a compilation and analysis of nucleic acid and amino acid sequences. Los Alamos National Laboratory, Los Alamos, N.Mex.
39. Nkengasong, J. N., W. Janssens, L. Heyndriekx, K. Fransen, P. M. Ndumbe, J. Motte, A. Leonaers, M. Ngolle, J. Ayuk, P. Piot, and G. van der Groen. 1994. Genotypic subtypes of HIV-1 in Cameroon. AIDS 8:1405-1412.
40. Nyambi, P. N., J. N. Nkengasong, P. Lewi, K. Andries, W. Janssens, K. Fransen, L. Heyndrickx, P. Piot, and G. van der Groen. 1996. Multivariate analysis of human immunodeficiency virus type 1 neutralization data. J. Viral. 70:6235-6243.
41. Pau, C. P., M. Kai, D. L. Holloman-Candal, C. C. Luo, M. L. Kalish, G. Schochetman, B. Byers, J. R. George, and the WHO Network for HIV Isolation and Characterization. 1994. Antigenic variation and serotyping of HIV type I from four World Health Organisation-sponsored HIV vaccine sites. AIDS Res. Hum. Retroviruses 11:1369-1377.
42. Pfützner, A., U. Dietrich, U. von Eichel, H. von Briesen, H. D. Brede, J. K. Maniar, and H. Rübsamen-Waigmann. 1992. HIV-1 and HIV-2 infections in a high-risk population in Bombay, India: evidence for the spread of HIV-2 and presence of a divergent HIV-1 subtype. J. Acquired Immune Defic. Syndr. 5:972-977.
43. Ratner, L., W. Haseltine, R. Patarca, K. J. Livak, B. Starcich, S. F. Josephs, E. R. Doran, J. A. Rafalski, E. A. Whitehorn, K. Baumeister, L. Ivanoff, S. R. Petteway, Jr., M. L. Pearson, J. A. Lautenberger, T. S. Papas, J. Ghrayeb, N. T. Chang, R. C. Gallo, and F. Wong-Staal. 1985. Complete nucleotide sequence of the AIDS virus, HTLV-III. Nature 313:277-284.
44. Rini, J. M., R. L. Stanfield, E. A. Stura, P. A. Salinas, A. T. Profy, and I. A. Wilson. 1993. Crystal structure of a human immunodeficiency virus type 1 neutralizing antibody, 50.1, in complex with its V3 loop peptide antigen. Proc. Natl. Acad. Sci. USA 90:6325-6329.
45. Sabino, E. C., E. G. Shpaer, M. G. Morgado, B. T. M. Korber, R. S. Diaz, V. Bongertz, S. Calvacante, B. Galvao-Castro, J. I. Mullins, and A. Mayer. 1994. Identification ol human immunodeficiency virus type 1 envelope gene recombinants between subtypes B and F in two epidemiologically linked individuals from Brazil. J. Virol. 68:6340-6346.
46. Sharp, P. M., D. L. Robertson, F. Gao, and B. Hahn. 1994. Origins and diversity of human immunodeficiency viruses. AIDS 8:S27-S42.
47. Sherefa, K., M. Sâllberg, and A. Sönnerborg. 1994. Evidence of no change in V3 loop antibody recognition pattern in HIV type 1-infected Ethiopians between 1988 and 1993. AIDS Res. Hum. Retroviruses 10:1551-1556.
48. Sherefa, K., A. Sönnerborg, J. Steinbergs, and M. Sâllberg. 1994. Rapid grouping of HIV-1 infection in subtypes A to E by V3 peptide serotyping and its relation to sequence analysis. Biochem. Biophys. Res. Commun. 205: 1658-1664.
49. Simon, F., I. Loussert-Ajaka, F. Danond, S. Saragosti, F. Barin, and F. Brun-Vezinet. 1996. HIV-1 diversity in Northern Paris, France. AIDS Res. Hum. Retroviruses 12:1427-1433.
50. Smith, J. D., C. B. Brace, A. S. R. Featherstone, R. G. Downing, B. Biryahawaho, J. C. S. Clegg, J. W. Carswell, and J. D. Oram. 1994. Reactions of Ugandan antisera with peptides encoded by V3 loop epitopes of human immunodeficiency virus type 1. AIDS Res. Hum. Retroviruses 10:577-583.
51. Vanden Haeseveld, M., J. L. Decourt, R. J. de Luys, B. Vanderborght, G. van der Groen, H. van Heuverswijn, and E. Saman. 1994. Genomic cloning and complete sequence analysis of a highly divergent African human immunodeficiency virus isolate. J. Virol. 68:1586-1596.
52. Zwart, G., T. F. W. Wolf, R. Bookelman, S. Hartman, M. Bakker, C. A. B. Boucher, C. Kuiken, and J. Goudsmit. 1993. Greater diversity of the HIV-1 V3 neutralization domain in Tanzania compared with The Netherlands: serological and genetic analysis. AIDS 7:467-474.