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Volumn , Issue , 1996, Pages 44-51

A Sequence Similarity Search Algorithm Based on a Probabilistic Interpretation of an Alignment Scoring System

Author keywords

[No Author keywords available]

Indexed keywords

ALIGNMENT; ARTIFICIAL INTELLIGENCE; LEARNING ALGORITHMS; PROBABILITY DISTRIBUTIONS; STOCHASTIC SYSTEMS;

EID: 0030341663     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper
Times cited : (39)

References (25)
  • 1
    • 0025878149 scopus 로고
    • Aminoacid substitution matrices from an information theoretic perspective
    • Altschul, S.F. 1991. Aminoacid substitution matrices from an information theoretic perspective. J. biol. Biol. 219:555-565.
    • (1991) J. biol. Biol , vol.219 , pp. 555-565
    • Altschul, S.F.1
  • 3
    • 0029916911 scopus 로고    scopus 로고
    • The SWISSPROTprotein sequence data bank and its newsupplement TREMBL
    • Bairoch, A., and Apweiler, R. 1996. The SWISSPROTprotein sequence data bank and its newsupplement TREMBL. Nucl. Acids Res. 24:21-25.
    • (1996) Nucl. Acids Res , vol.24 , pp. 21-25
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 0029916915 scopus 로고    scopus 로고
    • The PROSITE database, its status in 1995
    • Bairoch, A.; Bucher, P.; and Hofmann,K. 1996. The PROSITE database, its status in 1995. Nucl. Acids Res. 24:189-196.
    • (1996) Nucl. Acids Res , vol.24 , pp. 189-196
    • Bairoch, A.1    Bucher, P.2    Hofmann, K.3
  • 6
    • 0022474446 scopus 로고
    • Maximum likelihood alignment of DNAsequences
    • Bishop, M.J., and Thompson, E.A. 1986. Maximum likelihood alignment of DNAsequences. J. Mol. Biol. 190:159-165.
    • (1986) J. Mol. Biol , vol.190 , pp. 159-165
    • Bishop, M.J.1    Thompson, E.A.2
  • 7
    • 0000228203 scopus 로고
    • A model of evolutionary change in proteins
    • (Dayhoffl M.O., ed) suppl. 3, WashingtonDC: National Biomedical Research Foundation
    • Dayhoff, M.O.; Schwartz, R.M.; and Orcutt, B.C. 1978. A model of evolutionary change in proteins. In Atlas of Protein Sequence and Structure (Dayhoffl M.O., ed.) vol 5, suppl. 3, pp. 345-352. WashingtonDC: National Biomedical Research Foundation.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , pp. 345-352
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 8
    • 0020484488 scopus 로고
    • An improved algorithm for matching biological sequences
    • Gotoh, O. 1982. An improved algorithm for matching biological sequences. J. Mol. Biol. 162:705-708.
    • (1982) J. Mol. Biol , vol.162 , pp. 705-708
    • Gotoh, O.1
  • 9
    • 0026458378 scopus 로고
    • Aminoacid substitution matrices fromprotein blocks
    • Henikoff, S., and Henikoff, J.G. 1992. Aminoacid substitution matrices fromprotein blocks. Proc. Natl. Acad. Sci. USA89:10915-10919.
    • (1992) Proc. Natl. Acad. Sci. USA89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, J.G.2
  • 10
    • 0027317580 scopus 로고
    • Performance evaluation of aminoacid substitution matrices
    • Henikoff, S., and Henikoffl J.G. 1993. Performance evaluation of aminoacid substitution matrices. Proteins 17:49-61.
    • (1993) Proteins , vol.17 , pp. 49-61
    • Henikoff, S.1    Henikoffl, J.G.2
  • 12
    • 0025259313 scopus 로고
    • Methodsfor assessing the statistical significance of molecular sequence features by using general scoring schemes
    • Karlin, S., and Altschul, S.F. 1990. Methodsfor assessing the statistical significance of molecular sequence features by using general scoring schemes. Proc. Natl. Acad. Sci. USA87:2264-2268.
    • (1990) Proc. Natl. Acad. Sci. USA87 , pp. 2264-2268
    • Karlin, S.1    Altschul, S.F.2
  • 14
    • 0025264854 scopus 로고
    • The equilibrium partition function and base pair binding probabilities for RNAsecondary structure
    • McCaskill, J.S. 1990. The equilibrium partition function and base pair binding probabilities for RNAsecondary structure. Biopolymers 29:1105-1119.
    • (1990) Biopolymers , vol.29 , pp. 1105-1119
    • McCaskill, J.S.1
  • 15
    • 0027194328 scopus 로고
    • Discoveringsimple DNAsequences by the algorithmic significance method
    • Milosavljevi6, A., and Jurka, J. 1993. Discoveringsimple DNAsequences by the algorithmic significance method. CABIOS9:407-411.
    • (1993) CABIOS9 , pp. 407-411
    • Milosavljevi6, A.1    Jurka, J.2
  • 16
    • 0026566796 scopus 로고
    • Analysis insertions/deletions in protein structures
    • Pascarella, S., and Argos, P. (1992). Analysis insertions/deletions in protein structures. J. Mol.Biol. 224:461-471.
    • (1992) J. Mol.Biol , vol.224 , pp. 461-471
    • Pascarella, S.1    Argos, P.2
  • 17
    • 0025272240 scopus 로고
    • Rapid and sensitive sequence comparison with FASTPand FASTA
    • Pearson, W.R. 1990. Rapid and sensitive sequence comparison with FASTPand FASTA.Methods Enzytool. 183:63-98.
    • (1990) Methods Enzytool , vol.183 , pp. 63-98
    • Pearson, W.R.1
  • 18
    • 0025950944 scopus 로고
    • Searching protein sequence libraries: Comparisonof the sensitivity and selectivity of the Smith-Waterman and FASTAalgorithms
    • Pearson, W.R. 1991. Searching protein sequence libraries: Comparisonof the sensitivity and selectivity of the Smith-Waterman and FASTAalgorithms. Genomics 11:635-650.
    • (1991) Genomics , vol.11 , pp. 635-650
    • Pearson, W.R.1
  • 19
    • 0024610919 scopus 로고
    • A tutorial on hidden Markov models and selected applications in speech recognition
    • Rabiner, L.R. 1989. A tutorial on hidden Markov models and selected applications in speech recognition. Proc. IEEE77:257-286.
    • (1989) Proc. IEEE77 , pp. 257-286
    • Rabiner, L.R.1
  • 20
    • 0000821965 scopus 로고
    • On the theory and computation of evolutionary distances
    • Sellers, P.H. 1974. On the theory and computation of evolutionary distances. SIAMJ. Appl. Math 26:787-793.
    • (1974) SIAMJ. Appl. Math , vol.26 , pp. 787-793
    • Sellers, P.H.1
  • 21
    • 0019887799 scopus 로고
    • Identification of commonmolecular subsequences
    • Smith, T.F., and Waterman,M.S. 1981. Identification of commonmolecular subsequences. J. Mol. Biol., 147:195-197.
    • (1981) J. Mol. Biol , vol.147 , pp. 195-197
    • Smith, T.F.1    Waterman, M.S.2
  • 23
    • 0029028454 scopus 로고
    • Estimation and reliability of molecular sequence alignments
    • Thorne, J.L., and Churchill, G.A. 1995. Estimation and reliability of molecular sequence alignments. Biometrics 51:100-113.
    • (1995) Biometrics , vol.51 , pp. 100-113
    • Thorne, J.L.1    Churchill, G.A.2
  • 24
    • 0026079507 scopus 로고
    • An evolutionary model for maximumlikelihood alignment of DNAsequences
    • Thorne, J.L.; Kishino, H.; and Felsenstein, J. 1991. An evolutionary model for maximumlikelihood alignment of DNAsequences. J. Mol. Evol. 33:114-124.
    • (1991) J. Mol. Evol , vol.33 , pp. 114-124
    • Thorne, J.L.1    Kishino, H.2    Felsenstein, J.3
  • 25
    • 0026528734 scopus 로고
    • Inching toward reality: An improved likelihood model of sequence evolution
    • Thorne, J.L.; Kishino, H.; and Felsenstein, J. 1992. Inching toward reality: An improved likelihood model of sequence evolution. J. Mol. Evol. 34:3-16.
    • (1992) J. Mol. Evol , vol.34 , pp. 3-16
    • Thorne, J.L.1    Kishino, H.2    Felsenstein, J.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.