메뉴 건너뛰기




Volumn 20, Issue 5, 2004, Pages 521-530

Development and application of a high-throughput HIV type 1 genotyping assay to identify CRF02_AG in West/West Central Africa

Author keywords

[No Author keywords available]

Indexed keywords

CORTICOTROPIN RELEASING FACTOR; DNA; FLUORESCENT DYE; PLASMID DNA;

EID: 2642566029     PISSN: 08892229     EISSN: None     Source Type: Journal    
DOI: 10.1089/088922204323087778     Document Type: Article
Times cited : (27)

References (45)
  • 1
    • 0033773876 scopus 로고    scopus 로고
    • Understanding the genetic diversity of HIV-1
    • McCutchan FE: Understanding the genetic diversity of HIV-1. AIDS 2000;14(Suppl. 3):S31-44.
    • (2000) AIDS , vol.14 , Issue.3 SUPPL.
    • McCutchan, F.E.1
  • 3
    • 0033769416 scopus 로고    scopus 로고
    • Genetic diversity of HIV-1: The moving target
    • Peeters M and Sharp PM: Genetic diversity of HIV-1: The moving target. AIDS 2000;14(Suppl. 3):S129-140.
    • (2000) AIDS , vol.14 , Issue.3 SUPPL.
    • Peeters, M.1    Sharp, P.M.2
  • 5
    • 0036197586 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1 group m protease in cameroon: Genetic diversity and protease inhibitor mutational features
    • Fonjungo PN, Mpoudi EN, Torimiro JN, et al.: Human immunodeficiency virus type 1 group m protease in cameroon: Genetic diversity and protease inhibitor mutational features. J Clin Microbiol 2002;40:837-845.
    • (2002) J Clin Microbiol , vol.40 , pp. 837-845
    • Fonjungo, P.N.1    Mpoudi, E.N.2    Torimiro, J.N.3
  • 6
    • 0034801643 scopus 로고    scopus 로고
    • HIV-1 subtypes and the HIV epidemics in four cities in sub-Saharan Africa
    • Morison L, Buve A, Zekeng L, et al.: HIV-1 subtypes and the HIV epidemics in four cities in sub-Saharan Africa. AIDS 2001;15 (Suppl. 4):S109-116.
    • (2001) AIDS , vol.15 , Issue.4 SUPPL.
    • Morison, L.1    Buve, A.2    Zekeng, L.3
  • 7
    • 0035919643 scopus 로고    scopus 로고
    • The AG recombinant IbNG and novel strains of group M HIV-1 are common in Cameroon
    • Carr JK, Torimiro JN, Wolfe ND, et al.: The AG recombinant IbNG and novel strains of group M HIV-1 are common in Cameroon. Virology 2001;286:168-181.
    • (2001) Virology , vol.286 , pp. 168-181
    • Carr, J.K.1    Torimiro, J.N.2    Wolfe, N.D.3
  • 8
    • 0034927270 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV type 1 subtypes in equatorial guinea
    • Ortiz M, Sanchez I, Gonzalez MP, et al.: Molecular epidemiology of HIV type 1 subtypes in equatorial guinea. AIDS Res Hum Retroviruses 2001;17:851-855.
    • (2001) AIDS Res Hum Retroviruses , vol.17 , pp. 851-855
    • Ortiz, M.1    Sanchez, I.2    Gonzalez, M.P.3
  • 9
    • 0037169218 scopus 로고    scopus 로고
    • Predominance of infection with HIV-1 circulating recombinant form CRF02_AG in major Cameroonian cities and towns
    • Nyambi P, Heyndrickx L, Vereecken K, et al.: Predominance of infection with HIV-1 circulating recombinant form CRF02_AG in major Cameroonian cities and towns. AIDS 2002;16:295-296.
    • (2002) AIDS , vol.16 , pp. 295-296
    • Nyambi, P.1    Heyndrickx, L.2    Vereecken, K.3
  • 10
    • 0034284530 scopus 로고    scopus 로고
    • Presence of diverse human immunodeficiency virus type 1 viral variants in Cameroon
    • Fonjungo PN, Mpoudi EN, Torimiro JN, et al.: Presence of diverse human immunodeficiency virus type 1 viral variants in Cameroon. AIDS Res Hum Retroviruses 2000;16:1319-1324.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 1319-1324
    • Fonjungo, P.N.1    Mpoudi, E.N.2    Torimiro, J.N.3
  • 11
    • 0037114891 scopus 로고    scopus 로고
    • HIV type 1 group M clades infecting subjects from rural villages in equatorial rain forests of Cameroon
    • Zhong P, Burda S, Urbanski M, et al.: HIV type 1 group M clades infecting subjects from rural villages in equatorial rain forests of Cameroon. J Acquir Immune Defic Syndr 2002;31:495-505.
    • (2002) J Acquir Immune Defic Syndr , vol.31 , pp. 495-505
    • Zhong, P.1    Burda, S.2    Urbanski, M.3
  • 12
    • 12944284784 scopus 로고    scopus 로고
    • Most env and gag subtype A HIV-1 viruses circulating in West and West Central Africa are similar to the prototype AG recombinant virus IBNG
    • Montavon C, Toure-Kane C, Liegeois F, et al.: Most env and gag subtype A HIV-1 viruses circulating in West and West Central Africa are similar to the prototype AG recombinant virus IBNG. J Acquir Immune Defic Syndr 2000;23:363-374.
    • (2000) J Acquir Immune Defic Syndr , vol.23 , pp. 363-374
    • Montavon, C.1    Toure-Kane, C.2    Liegeois, F.3
  • 13
    • 0032910090 scopus 로고    scopus 로고
    • Genetic analysis of human immunodeficiency virus in Abidjan, Ivory Coast reveals predominance of HIV type 1 subtype A and introduction of subtype G
    • Ellenberger DL, Pieniazek D, Nkengasong J, et al.: Genetic analysis of human immunodeficiency virus in Abidjan, Ivory Coast reveals predominance of HIV type 1 subtype A and introduction of subtype G. AIDS Res Hum Retroviruses 1999;5:3-9.
    • (1999) AIDS Res Hum Retroviruses , vol.5 , pp. 3-9
    • Ellenberger, D.L.1    Pieniazek, D.2    Nkengasong, J.3
  • 14
    • 0036434272 scopus 로고    scopus 로고
    • Generation of a consensus sequence from prevalent and incident HIV-1 infections in West Africa to guide AIDS vaccine development
    • Ellenberger DL, Li B, Lupo LD, et al.: Generation of a consensus sequence from prevalent and incident HIV-1 infections in West Africa to guide AIDS vaccine development. Virology 2002;302:155-163.
    • (2002) Virology , vol.302 , pp. 155-163
    • Ellenberger, D.L.1    Li, B.2    Lupo, L.D.3
  • 15
    • 0033619105 scopus 로고    scopus 로고
    • Molecular characterization of human immunodeficiency virus (HIV)-1 and -2 in individuals from guinea-bissau with single or dual infections: Predominance of a distinct HIV-1 subtype A/G recombinant in West Africa
    • Andersson S, Norrgren H, Dias F, Biberfeld G, and Albert J: Molecular characterization of human immunodeficiency virus (HIV)-1 and -2 in individuals from guinea-bissau with single or dual infections: Predominance of a distinct HIV-1 subtype A/G recombinant in West Africa. Virology 1999;262:312-320.
    • (1999) Virology , vol.262 , pp. 312-320
    • Andersson, S.1    Norrgren, H.2    Dias, F.3    Biberfeld, G.4    Albert, J.5
  • 16
    • 0034008362 scopus 로고    scopus 로고
    • Predominance of subtype A and G HIV type 1 in Nigeria, with geographical differences in their distribution
    • Peeters M, Esu-Williams E, Vergne L, et al. : Predominance of subtype A and G HIV type 1 in Nigeria, with geographical differences in their distribution. AIDS Res Hum Retroviruses 2000;16:315-325.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 315-325
    • Peeters, M.1    Esu-Williams, E.2    Vergne, L.3
  • 17
    • 0033979002 scopus 로고    scopus 로고
    • Spread of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa
    • Cornelissen M, van Den Burg R, Zorgdrager F, and Goudsmit J: Spread of distinct human immunodeficiency virus type 1 AG recombinant lineages in Africa. J Gen Virol 2000;81:515-523.
    • (2000) J Gen Virol , vol.81 , pp. 515-523
    • Cornelissen, M.1    Van Den Burg, R.2    Zorgdrager, F.3    Goudsmit, J.4
  • 18
    • 0033557059 scopus 로고    scopus 로고
    • Subtype G and multiple forms of A/G intersubtype recombinant human immunodeficiency virus type 1 in Nigeria
    • McCutchan FE, Carr JK, Bajani M, et al.: Subtype G and multiple forms of A/G intersubtype recombinant human immunodeficiency virus type 1 in Nigeria. Virology 1999;254:226-234.
    • (1999) Virology , vol.254 , pp. 226-234
    • McCutchan, F.E.1    Carr, J.K.2    Bajani, M.3
  • 19
    • 0036403169 scopus 로고    scopus 로고
    • Analysis of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon
    • Pandrea I, Robertson DL, Onanga R, et al.: Analysis of partial pol and env sequences indicates a high prevalence of HIV type 1 recombinant strains circulating in Gabon. AIDS Res Hum Retroviruses 2002;18:1103-1116.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 1103-1116
    • Pandrea, I.1    Robertson, D.L.2    Onanga, R.3
  • 20
    • 0036067169 scopus 로고    scopus 로고
    • Predominance of CRF02-AG and CRF06-cpx in Niger, West Africa
    • Mamadou S, Montavon C, Ben A, et al.: Predominance of CRF02-AG and CRF06-cpx in Niger, West Africa. AIDS Res Hum Retroviruses 2002;18:723-726.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 723-726
    • Mamadou, S.1    Montavon, C.2    Ben, A.3
  • 21
    • 0033925193 scopus 로고    scopus 로고
    • Molecular evolution of human immunodeficiency virus type 1 subtype A in Senegal: 1988-1997
    • Sankale JL, Hamel D, Woolsey A, et al.: Molecular evolution of human immunodeficiency virus type 1 subtype A in Senegal: 1988-1997. J Hum Virol 2000;3:157-164.
    • (2000) J Hum Virol , vol.3 , pp. 157-164
    • Sankale, J.L.1    Hamel, D.2    Woolsey, A.3
  • 22
    • 0034694003 scopus 로고    scopus 로고
    • Study of HIV type 1 gag/env variability in the Gambia, using a multiplex DNA polymerase chain reaction
    • Cham F, Heyndrickx L, Janssens W, et al.: Study of HIV type 1 gag/env variability in The Gambia, using a multiplex DNA polymerase chain reaction. AIDS Res Hum Retroviruses 2000;16:1915-1919.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 1915-1919
    • Cham, F.1    Heyndrickx, L.2    Janssens, W.3
  • 23
    • 0036179349 scopus 로고    scopus 로고
    • Identification of a new circulating recombinant form of HIV type 1, CRF11-cpx, involving subtypes A, G, J, and CRF01-AE, in Central Africa
    • Montavon C, Vergne L, Bourgeois A, et al.: Identification of a new circulating recombinant form of HIV type 1, CRF11-cpx, involving subtypes A, G, J, and CRF01-AE, in Central Africa. AIDS Res Hum Retroviruses 2002;18:231-236.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 231-236
    • Montavon, C.1    Vergne, L.2    Bourgeois, A.3
  • 24
    • 0032565724 scopus 로고    scopus 로고
    • Various types of HIV mixed infections in Cameroon
    • Takehisa J, Zekeng L, Ido E, et al.: Various types of HIV mixed infections in Cameroon. Virology 1998;245:1-10.
    • (1998) Virology , vol.245 , pp. 1-10
    • Takehisa, J.1    Zekeng, L.2    Ido, E.3
  • 25
    • 0034630180 scopus 로고    scopus 로고
    • Identification of all HIV type 1 group M subtypes in Senegal, a country with low and stable seroprevalence
    • Toure-Kane C, Montavon C, Faye MA, et al.: Identification of all HIV type 1 group M subtypes in Senegal, a country with low and stable seroprevalence. AIDS Res Hum Retroviruses 2000;16:603-609.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 603-609
    • Toure-Kane, C.1    Montavon, C.2    Faye, M.A.3
  • 26
    • 0036172820 scopus 로고    scopus 로고
    • Genetic subtypes of HIV type 1 based on the vpu/env sequences in the Republic of Congo
    • Taniguchi Y, Takehisa J, Bikandou B, et al.: Genetic subtypes of HIV type 1 based on the vpu/env sequences in the Republic of Congo. AIDS Res Hum Retroviruses 2002;18:79-83.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 79-83
    • Taniguchi, Y.1    Takehisa, J.2    Bikandou, B.3
  • 27
    • 0035283090 scopus 로고    scopus 로고
    • Predominance of HIV type 1 subtype G among commercial sex workers from Kinshasa, Democratic Republic of Congo
    • Yang C, Dash B, Hanna SL, et al.: Predominance of HIV type 1 subtype G among commercial sex workers from Kinshasa, Democratic Republic of Congo. AIDS Res Hum Retroviruses 2001;17:361-365.
    • (2001) AIDS Res Hum Retroviruses , vol.17 , pp. 361-365
    • Yang, C.1    Dash, B.2    Hanna, S.L.3
  • 28
    • 0037250394 scopus 로고    scopus 로고
    • Emergence of complex and diverse CRF02-AG/CRF06-cpx recombinant HIV type 1 strains in Niger, West Africa
    • Mamadou S, Vidal N, Montavon C, et al.: Emergence of complex and diverse CRF02-AG/CRF06-cpx recombinant HIV type 1 strains in Niger, West Africa. AIDS Res Hum Retroviruses 2003;19:77-82.
    • (2003) AIDS Res Hum Retroviruses , vol.19 , pp. 77-82
    • Mamadou, S.1    Vidal, N.2    Montavon, C.3
  • 29
    • 0034632843 scopus 로고    scopus 로고
    • Near full-length genome analysis of HIV type 1 CRF02.AG subtype C and CRF02.AG subtype G recombinants
    • Janssens W, Salminen MO, Laukkanen T, et al.: Near full-length genome analysis of HIV type 1 CRF02.AG subtype C and CRF02.AG subtype G recombinants. AIDS Res Hum Retroviruses 2000;16:1183-1189.
    • (2000) AIDS Res Hum Retroviruses , vol.16 , pp. 1183-1189
    • Janssens, W.1    Salminen, M.O.2    Laukkanen, T.3
  • 30
    • 0028885704 scopus 로고
    • Recovery of virtually full-length HIV-1 pro virus of diverse subtypes from primary virus cultures using the polymerase chain reaction
    • Salminen MO, Koch C, Sanders-Buell E, et al.: Recovery of virtually full-length HIV-1 pro virus of diverse subtypes from primary virus cultures using the polymerase chain reaction. Virology 1995;213:80-86.
    • (1995) Virology , vol.213 , pp. 80-86
    • Salminen, M.O.1    Koch, C.2    Sanders-Buell, E.3
  • 31
    • 0032551653 scopus 로고    scopus 로고
    • Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G inter-subtype recombinants
    • Carr JK, Salminen MO, Albert J, et al.: Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G inter-subtype recombinants. Virology 1998;247:22-31.
    • (1998) Virology , vol.247 , pp. 22-31
    • Carr, J.K.1    Salminen, M.O.2    Albert, J.3
  • 32
    • 0032736151 scopus 로고    scopus 로고
    • Characterization of subtype A HIV-1 from Africa by full genome sequencing
    • Carr JK, Laukkanen T, Salminen MO, et al.: Characterization of subtype A HIV-1 from Africa by full genome sequencing. AIDS 1999;13:1819-1826.
    • (1999) AIDS , vol.13 , pp. 1819-1826
    • Carr, J.K.1    Laukkanen, T.2    Salminen, M.O.3
  • 33
    • 0033587592 scopus 로고    scopus 로고
    • HIV type 1 genetic variability in the northern part of Cameroon
    • Mboudjeka I, Zekeng L, Takehisa J, et al.: HIV type 1 genetic variability in the northern part of Cameroon. AIDS Res Hum Retroviruses 1999;15:951-956.
    • (1999) AIDS Res Hum Retroviruses , vol.15 , pp. 951-956
    • Mboudjeka, I.1    Zekeng, L.2    Takehisa, J.3
  • 34
    • 0031964519 scopus 로고    scopus 로고
    • Genetic subtypes of HIV type 1 and HIV type 2 strains in commercial sex workers from Bamako, Mali
    • Peeters M, Koumare B, Mulanga C, et al.: Genetic subtypes of HIV type 1 and HIV type 2 strains in commercial sex workers from Bamako, Mali. AIDS Res Hum Retroviruses 1998;14:51-58.
    • (1998) AIDS Res Hum Retroviruses , vol.14 , pp. 51-58
    • Peeters, M.1    Koumare, B.2    Mulanga, C.3
  • 35
    • 0033987164 scopus 로고    scopus 로고
    • Simplified strategy for detection of recombinant human immunodeficiency virus type 1 group M isolates by gag/env heteroduplex mobility assay
    • Study Group on Heterogeneity of HIV Epidemics in African Cities
    • Heyndrickx L, Janssens W, Zekeng L, et al.: Simplified strategy for detection of recombinant human immunodeficiency virus type 1 group M isolates by gag/env heteroduplex mobility assay. Study Group on Heterogeneity of HIV Epidemics in African Cities. J Virol 2000;74:363-370.
    • (2000) J Virol , vol.74 , pp. 363-370
    • Heyndrickx, L.1    Janssens, W.2    Zekeng, L.3
  • 36
    • 0034994754 scopus 로고    scopus 로고
    • Development of an env gp41-based heteroduplex mobility assay for rapid human immunodeficiency virus type 1 subtyping
    • Agwale SM, Robbins KE, Odama L, et al.: Development of an env gp41-based heteroduplex mobility assay for rapid human immunodeficiency virus type 1 subtyping. J Clin Microbiol 2001;39:2110-2114.
    • (2001) J Clin Microbiol , vol.39 , pp. 2110-2114
    • Agwale, S.M.1    Robbins, K.E.2    Odama, L.3
  • 37
    • 0037131204 scopus 로고    scopus 로고
    • Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay
    • Hoelscher M, Dowling WE, Sanders-Buell E, et al.: Detection of HIV-1 subtypes, recombinants, and dual infections in east Africa by a multi-region hybridization assay. AIDS 2002;16:2055-2064.
    • (2002) AIDS , vol.16 , pp. 2055-2064
    • Hoelscher, M.1    Dowling, W.E.2    Sanders-Buell, E.3
  • 38
    • 0036940259 scopus 로고    scopus 로고
    • Molecular epidemiology of HIV type 1 in Ecuador, Peru, Bolivia, Uruguay, and Argentina
    • Hierholzer J, Montano S, Hoelscher M, et al.: Molecular epidemiology of HIV type 1 in Ecuador, Peru, Bolivia, Uruguay, and Argentina. AIDS Res Hum Retroviruses 2002;18:1339-1350.
    • (2002) AIDS Res Hum Retroviruses , vol.18 , pp. 1339-1350
    • Hierholzer, J.1    Montano, S.2    Hoelscher, M.3
  • 42
    • 0012437220 scopus 로고
    • Ribosomal DNA Database Project, University of Illinois Board of Trustees, Urbana, IL
    • Maciukenas S: Treetool, 2.0.2. Ribosomal DNA Database Project, University of Illinois Board of Trustees, Urbana, IL, 1994.
    • (1994) Treetool, 2.0.2
    • Maciukenas, S.1
  • 43
    • 0028793170 scopus 로고
    • Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning
    • Salminen MO, Carr JK, Burke DS, and McCutchan FE: Identification of breakpoints in intergenotypic recombinants of HIV type 1 by bootscanning. AIDS Res Hum Retroviruses 1995;11:1423-1425.
    • (1995) AIDS Res Hum Retroviruses , vol.11 , pp. 1423-1425
    • Salminen, M.O.1    Carr, J.K.2    Burke, D.S.3    McCutchan, F.E.4
  • 44
    • 0035009916 scopus 로고    scopus 로고
    • One-tube real-time isothermal amplification assay to identify and distinguish human immunodeficiency virus type 1 subtypes A, B, and C and circulating recombinant forms AE and AG
    • de Baar MP, Timmermans EC, Bakker M, de Rooij E, van Gemen B, and Goudsmit J: One-tube real-time isothermal amplification assay to identify and distinguish human immunodeficiency virus type 1 subtypes A, B, and C and circulating recombinant forms AE and AG. J Clin Microbiol 2001;39:1895-1902.
    • (2001) J Clin Microbiol , vol.39 , pp. 1895-1902
    • De Baar, M.P.1    Timmermans, E.C.2    Bakker, M.3    De Rooij, E.4    Van Gemen, B.5    Goudsmit, J.6
  • 45
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
    • Kimura M: A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 1980;16:111-120.
    • (1980) J Mol Evol , vol.16 , pp. 111-120
    • Kimura, M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.