Molecular characterization of human immunodeficiency virus (HIV)-1 and - 2 in individuals from Guinea-Bissau with single or dual infections: Predominance of a distinct HIV-1 subtype A/G recombinant in West Africa

Virology

Volumn 262, Issue 2, 1999, Pages 312-320

  Andersson, Sören ^a   Norrgren, Hans ^b,c   Dias, Francisco ^b   Biberfeld, Gunnel ^a   Albert, Jan ^a  

^a KAROLINSKA INSTITUTE   (Sweden)

^b National Public Health Laboratory   (Guinea-Bissau)

^c LUND UNIVERSITY HOSPITAL   (Sweden)

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; AFRICA; ARTICLE; CLINICAL ARTICLE; DNA SEQUENCE; FEMALE; GENE SEQUENCE; GENETIC RECOMBINATION; HUMAN; HUMAN IMMUNODEFICIENCY VIRUS 1; HUMAN IMMUNODEFICIENCY VIRUS 2; HUMAN IMMUNODEFICIENCY VIRUS INFECTION; MALE; NONHUMAN; PHYLOGENY; PREVALENCE; PRIORITY JOURNAL; VIRUS CHARACTERIZATION;

EID: 0033619105     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1999.9867     Document Type: Article

References (33)

1. Albert J., Bredberg U., Chiodi F., Böttiger B., Fenyö E.-M., Norrby E., Biberfeld G. A new human retrovirus isolate of West African origin (SBL-6669) and its relationship to HTLV-IV, LAV-II and HTLV-IIIB. AIDS Res. Hum. Retroviruses. 3:1987;3-10.
2. Andersson S., da Silva Z., Norrgren H., Dias F., Biberfeld G. Field evaluation of alternative testing strategies for diagnosis and differentiation of HIV-1 and HIV-2 infections in an HIV-1 and HIV-2 prevalent area. AIDS. 11:1997;1815-1822.
3. Brandful J., Ampofo W., Janssens W., Adu-Sarkodie Y., Apeagyei F., Anyomi F., Aidoo S., Yamamoto N., Ishikawa K., Sata T., Kurata T. Genetic and phylogenetic analysis of HIV type 1 strains from southern Ghana. AIDS Res. Hum. Retroviruses. 14:1998;815-819.
4. Carr, J, Foley, B, Leitner, T, Salminen, M, Korber, B, and, McCutchan, F. 1999, Reference sequences representing the principal genetic diversity of HIV-1 in the pandemic, Los Alamos National Laboratory, Los Alamos, NM; paper available at, http://hiv-web.lanl.gov .
5. Carr J., Salminen M., Albert J., Sanders-Buell E., Gotte D., Birx D., McCutchan F. Full genome sequences of human immunodeficiency virus type 1 subtypes G and A/G intersubtype recombinants. Virology. 247:1998;22-31.
6. Chen Z., Luckay A., Sodora D., Telfer P., Reed P., Gettie A., Kanu J., Sadek R., Yee J., Ho D., Zhang L., Marx P. Human immunodeficiency virus type 2 (HIV-2) seroprevalence and characterization of a distinct HIV-2 genetic subtype from the natural range of simian immunodeficiency virus-infected sooty mangabeys. J. Virol. 71:1997;3953-3960.
7. De Kock K., Adjorlolo G., Ekpini E., Sibailly T., Kouadio J., Maran M., Brattegaard K., Vetter K., Doorly R., Gayle H. Epidemiology and transmission of HIV-2: Why there is no HIV-2 pandemic. JAMA. 270:1993;2083-2086.
8. De Kock K., Porter A., Kouadio J., Maran M., Lafontaine M.-F., Gershy-Damet G.-M., Heyward W., George R. Cross-reactivity on Western blots in HIV-1 and HIV-2 infections. AIDS. 5:1991;859-863.
9. Delaporte E., Janssens W., Peeters M., Buvé A., Dibanga G., Perret J.-L., Ditsambou V., Mba J.-R., Georges Courbot M.-C., Georges A., Bourgeois A., Samb B., Henzel D., Heyndrickx L., Fransen K., van der Groen G., Larouzé B. Epidemiological and molecular characteristics of HIV infection in Gabon, 1986-1994. AIDS. 10:1996;903-910.
10. Ellenberger D., Pieniazek D., Nkengasong J., Luo C. C., Devare S., Maurice C., Janini M., Ramos A., Fridlund C., Hu D. J., Coulibaly I. M., Ekpini E., Wiktor S. Z., Greenberg A. E., Schochetman G., Rayfield M. A. Genetic analysis of human immunodeficiency virus in Abidjan, Ivory Coast reveals predominance of HIV-1 subtype A and introduction of subtype G. AIDS Res. Hum. Retroviruses. 15:1999;3-9.
11. Felsenstein, J. 1993, PHYLIP: Phylogenetic Inference Package, Version 3.52c, University of Washington, Seattle, WA.
12. Gao F., Yue L., Robertson D., Hill S., Hui H., Biggar R., Neequaye A., Wheelan T., Ho D., Shaw G., Sharp P., Hahn B. Genetic diversity of human immunodeficiency virus type 2: Evidence for distinct sequence subtypes with differences in virus biology. J. Virol. 68:1994;7433-7447.
13. Grez M., Dietrich U., Balfe P., von Briesen H., Maniar J., Mahambre G., Delwart E., Mullins J., Rübsamen-Waigmann H. Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses. J. Virol. 68:1994;2161-2168.
14. Janssens W., Buvé A., Nkengasong J. The puzzle of HIV-1 subtypes in Africa. AIDS. 11:1997;705-712.
15. Leitner T., Korber B., Robertson D., Gao F., Hahn B. Updated proposal of reference sequences of HIV-1 genetic subtypes. Korber B., Hahn B., Foley B., Mellors J., Leitner T., Myers G., McCutchan F., Kuiken C. Human Retroviruses and AIDS 1997. 1997;III-20-III-23 Los Alamos National Laboratory, Los Alamos.
16. Leitner T., Korovina G., Marquina S., Smolskaya T., Albert J. Molecular epidemiology and MT-2 cell tropism of Russian HIV type 1 variants. AIDS Res. Hum. Retroviruses. 12:1996;1595-1603.
17. Lyamuya E., Bredberg-Rådén U., Albert J., Grankvist O., Msangi V., Kagoma C., Mhalu F., Biberfeld G. Comparison of in-house and commercial sample preparation and PCR amplification systems for detection of human immunodeficiency virus type 1 DNA in blood samples from Tanzanian adults. J. Clin. Microbiol. 35:1997;278-280.
18. Norrgren H., Andersson S., Biague A., da Silva Z., Dias F., Nauclér A., Biberfeld G. Trends and interaction of HIV-1, and HIV-2 in Guinea-Bissau, West Africa: No protection of HIV-2 against HIV-1 infection. AIDS. 13:1999;701-707.
19. Norrgren H., Andersson S., Nauclér A., Dias F., Johansson I., Biberfeld G. HIV-1, HIV-2, HTLV-I/II and Treponema pallidum infections: Incidence, prevalence and HIV-2 associated mortality in an occupational cohort in Guinea-Bissau. J. Acquir. Immune Defic. Syndr. 9:1995;422-428.
20. Norrgren H., Marquina S., Leitner T., Aaby P., Melbye M., Poulsen A-G., Larsen O., Dias F., Escanilla D., Andersson S., Albert J., Nauclér A. HIV-2 genetic variation and viral load in asymptomatic carriers and AIDS cases in Guinea-Bissau. J. Acquir. Immune Defic. Syndr. 16:1997;31-38.
21. Oelrichs R., Workman C., Laukkanen T., McCutchan F., Deacon N. A novel subtype A/G/J recombinant full-length HIV type 1 genome from Burkina Faso. AIDS Res. Hum. Retroviruses. 14:1998;1495-1500.
22. Peeters M., Koumare B., Mulanga C., Brengues C., Mounirou B., Bougoudogo F., Ravel S., Bibollet-Ruche F., Delaporte E. Genetic subtypes of HIV type 1 and HIV type 2 strains in commercial sex workers from Bamako, Mali. AIDS Res. Hum. Retroviruses. 14:1998;51-58.
23. Poulsen A.-G., Aaby P., Gottschau A., Kvinesdal B., Dias F., Mölbak K., Lauritzen E. HIV-2 infection in Guinea-Bissau, West Africa, 1987-89: Incidence, prevalences and routes of transmission. J. Acquir. Immune Defic. Syndr. 6:1993;941-948.
24. Simon F., Mauclère P., Roques P., Loussert-Ajaka I., Muller-Trutwin M., Saragosti S., Georges-Courbot MC., Barré-Sinoussi F., Brun-Vezinet F. Identification of a new human immunodeficiency virus type 1 distinct from group M and group O. Nat. Med. 4:1998;1032-1037.
25. Smith, S. 1992, GDE: Genetic Data Environment, Version 2.2, Millipore Imaging Systems, Ann Arbor, MI.
26. Takehisa J., Zekeng L., Mboudjeka I., Moriyama H., Miura T., Yamashita M., Gurtler L. G., Hayami M., Kaptué L. Various types of HIV mixed infections in Cameroon. Virology. 245:1998;1-10.
27. Travers K., Mboup S., Marlink R., Guéye-Ndiaye A., Siby T., Thior I., Traore I., Dieng-Sarr A., Sankalé J.-L., Mullins C., Ndoye I., Hsieh C.-C., Essex M., Kanki P. Natural protection against HIV-1 infection provided by HIV-2. Science. 268:1995;1612-1615.
28. Wahlberg J., Fiore J., Angarano G., Uhlén M., Albert J. Apparent selection against transmission of zidovudine resistant HIV-1 variants. J. Infect. Dis. 169:1994;611-614.
29. Walther L., Grankvist O., Mirzai B., da Silva Z., Fredlund H., Biberfeld G., Thorstensson R. Optimization of polymerase chain reaction for detection of HIV-2 DNA. AIDS Res. Hum. Retroviruses. 14:1998;1151-1156.
30. Walther-Jallow L., Andersson S., da Silva Z., Biberfeld G. High concordance between polymerase chain reaction and antibody testing of specimens from HIV-1 and HIV-2 dually infected individuals in Guinea-Bissau, West Africa. AIDS Res Hum Retroviruses. 1999.
31. Wiktor S., Nkengasong J., Ekpini E., Adjorlolo-Johnson G., Ghys P., Brattegard K., Tossou O., Dondero T., De Cock K., Greenberg A. Lack of protection against HIV-1 infection among women with HIV-2 infection. AIDS. 13:1999;695-699.
32. Weekly Epidemiol. Rec. 69:1994;273-275.
33. WHO Weekly Epidemiol. 37:1990;281-283.