Amycolatopsis plumensis sp. nov., a novel bioactive actinomycete isolated from a New-Caledonian brown hypermagnesian ultramafic soil

International Journal of Systematic and Evolutionary Microbiology

Volumn 55, Issue 5, 2005, Pages 2057-2061

  Saintpierre Bonaccio, Danielle ^a   Amir, Hamid ^a   Pineau, René ^a   Tan, G Y Annie ^b   Goodfellow, Michael ^b  

^a UNIVERSITÉ DE LA NOUVELLE CALÉDONIE   (New Caledonia)

^b NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; RIBOSOME RNA; RNA 16S;

ACTINOBACTERIA; ACTINOMYCETACEAE; AMYCOLATOPSIS KENTUCKYENSIS; AMYCOLATOPSIS LEXINGTONENSIS; AMYCOLATOPSIS PLUMENSIS; AMYCOLATOPSIS PRETORIENSIS; AMYCOLATOPSIS RIFAMYCINICA; AMYCOLATOPSIS TOLYPOMYCINA; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; GENE SEQUENCE; GENOTYPE; NEW CALEDONIA; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPIC VARIATION; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SOIL MICROFLORA; STRAIN DIFFERENCE; TAXONOMY;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; DNA, RIBOSOMAL; GENES, RRNA; GENOTYPE; MAGNESIUM; MOLECULAR SEQUENCE DATA; NEW CALEDONIA; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SOIL; SOIL MICROBIOLOGY;

AMYCOLATOPSIS; AMYCOLATOPSIS KENTUCKYENSIS; AMYCOLATOPSIS LEXINGTONENSIS; AMYCOLATOPSIS PLUMENSIS; AMYCOLATOPSIS PRETORIENSIS; AMYCOLATOPSIS TOLYPOMYCINA;

EID: 26244443931     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.63630-0     Document Type: Article

References (35)

1. Bala, S., Khanna, R., Dadhwal, M., Prabagaran, S. R., Shivaji, S., Cullum, T. & Lal, R. (2004). Reclassification of Amycolatopsis mediterranei DSM 46095 as Amycolatopsis rifamycinica sp. nov. Int J Syst Evol Microbiol 54, 1145-1149.
2. Chun, J., Kim, S. B., Oh, Y. K. & 7 other authors (1999). Amycolatopsis thermoflava sp. nov., a novel soil actinomycete from Hainan Island, China. Int J Syst Bacteriol 49, 1369-1373.
3. Embley, T. M., Smida, J. & Stackebrandt, E. (1988). The phylogeny of mycolate-less wall chemotype IV actinomycetes and description of Pseudonocardiaceae fam. nov. Syst Appl Microbiol 11, 16-19.
4. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
5. Fitch, W. M. (1971). Towards defining the course of evolution: minimum change for a specific tree topology. Syst Zool 20, 406-416.
6. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated from cytochrome c sequences is of general applicability. Science 155, 279-284.
7. Goodfellow, M., Brown, A. B., Cai, J., Chun, J. & Collins, M. D. (1997). Amycolatopsis japonicum sp. nov., an actinomycete producing (S,S)-N,N′-ethylenediaminedisuccinic acid. Syst Appl Microbiol 20, 78-84.
8. Goodfellow, M., Kim, S. B., Minnikin, D. E., Whitehead, D., Zhou, Z.-H. & Mattinson-Rose, A. D. (2001). Antycolatopsis sacchari sp. nov., a moderately thermophilic actinomycete isolated from vegetable matter. Int J Syst Evol Microbiol 51, 187-193.
9. Gordon, R. E. & Mihm, J. M. (1962). Identification of Nocardia caviae (Erikson) nov. comb. Ann N Y Acad Sci 98, 628-636.
10. Huang, Y., Qi, W., Lu, Z., Liu, Z. & Goodfellow, M. (2001). Amycolatopsis rubida sp. nov., a new Amycolatopsis species from soil. Int J Syst Evol Microbiol 51, 1093-1097.
11. Huang, Y., Paściak, M., Liu, Z., Xie, Q. & Gamian, A. (2004). Amycolatopsis palatopharyngis sp. nov., a potentially pathogenic actinomycete isolated from a human clinical source. Int J Syst Evol Microbiol 54, 359-363.
12. Jaffré, T. (1976). Chemical composition and conditions of mineral supply for plants on ultrabasic rocks. In ORSTROM Notebook, Biology Series II, pp. 53-63. Paris: ORSTROM (in French).
13. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-145.
14. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
15. Kim, S. B. & Goodfellow, M. (1999). Reclassification of Amycolatopsis rugosa Lechevalier et al. 1986 as Prauserella rugosa gen. nov., comb. nov. Int J Syst Bacteriol 49, 507-512.
16. Kim, S. B., Brown, R., Oldfield, C., Gilbert, S. C. & Goodfellow, M. (1999). Gordonia desulfuricans sp. nov., a benzothiophenedesulphurizing actinomycete. Int J Syst Bacteriol 49, 1845-1851.
17. Kim, B., Sahin, N., Tan, G. Y. A., Zakrzewska-Czerwinska, J. & Goodfellow, M. (2002). Amycolatopsis eurytherma sp. nov., a thermophilic actinomycete isolated from soil. Int J Syst Evol Microbiol 52, 889-894.
18. Labeda, D. P. & Kroppenstedt, R. M. (2000). Phylogenetic analysis of Saccharothrix and related taxa: proposal for Actinosynnemataceae fam. nov. Int J Syst Evol Microbiol 50, 331-336.
19. Labeda, D. P., Donahue, J. M., Williams, N. M., Sells, S. F. & Henton, M. M. (2003). Amycolatopsis kentuckyensis sp. nov., Amycolatopsis lexingtonensis sp. nov. and Amycolatopsis pretoriensis sp. nov., isolated from equine placentas. Int J Syst Evol Microbiol 53, 1601-1605.
20. Lechevalier, M. P. & Lechevalier, H. A. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
21. Lechevalier, M. P., Prauser, H., Labeda, D. P. & Ruan, J. S. (1986). Two new genera of nocardioform actinomycetes - Amycolata gen. nov. and Amycolatopsis gen. nov. Int J Syst Bacteriol 36, 29-37.
22. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
23. Saintpierre, D. (2001). Identification of novel actinomycete strains from New Caledonian ultramafic soils. Chemical characterization of some antibiotic products. PhD thesis, Institut National Polytechnique de Toulouse, France (in French).
24. Saintpierre, D., Amir, H., Pineau, R., Sembiring, L. & Goodfellow, M. (2003). Streptomyces yatensis sp. nov., a novel bioactive streptomycete isolated from a New-Caledonian ultramafic soil. Antonie van Leeuwenhoek 83, 21-26.
25. Saintpierre-Bonaccio, D., Maldonado, L. A., Amir, H., Pineau, R. & Goodfellow, M. (2004a). Nocardia neocaledoniensis sp. nov., a novel actinomycete isolated from a New-Caledonian brown hypermagnesian ultramafic soil. Int J Syst Evol Microbiol 54, 599-603.
26. Saintpierre-Bonaccio, D., Amir, H., Pineau, R., Lemriss, S. & Goodfellow, M. (2004b). Streptomyces ferralitis sp. nov., a novel streptomycete isolated from a New-Caledonian ultramafic soil. Int J Syst Evol Microbiol 54, 2061-2065.
27. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4, 406-425.
28. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
29. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
30. Tan, G. Y. A. (2002). Selective isolation, characterisation and screening of novel species of Amycolatopsis. PhD thesis, University of Newcastle, UK.
31. Vobis, G. (1992). The genus Actinoplanes and related genera. In The Prokaryotes, a Handbook of Habitats, Isolation and Identification of Bacteria, pp. 1029-1060. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
32. Warwick, S., Bowen, T., McVeigh, H. & Embley, T. M. (1994). A phylogenetic analysis of the family Pseudonocardiaceae and the genera Actinokineospora and Saccharothrix with 16S rRNA sequences and a proposal to combine the genera Amycolata and Pseudonocardia in an emended genus Pseudonocardia. Int J Syst Bacteriol 44, 293-299.
33. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
34. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
35. Wink J. M., Kroppenstedt, R. M., Ganguli, B. N., Nadkarni, S. R., Schumann, P., Seibert, G. & Stackebrandt, E. (2003). Three new antibiotic producing species of the genus Amycolatopsis, Amycolatopsis balhimycina sp. nov., A. tolypomycina sp. nov., A. vancoresmycina sp. nov., and description of Amycolatopsis keratiniphila subsp. keratiniphila subsp. nov. and A. keratiniphila subsp. nogabecina subsp. nov. Syst Appl Microbiol 26, 38-46.