-
1
-
-
0026561487
-
Dialysis-related amyloidosis
-
K.M. Koch Dialysis-related amyloidosis Kidney Int. 41 1992 1416 1429
-
(1992)
Kidney Int.
, vol.41
, pp. 1416-1429
-
-
Koch, K.M.1
-
2
-
-
0031592945
-
Common core structure of amyloid fibrils by synchrotron X-ray diffraction
-
M. Sunde, L.C. Serpell, M. Bartlam, P.E. Fraser, M.B. Pepys, and C.C.F. Blake Common core structure of amyloid fibrils by synchrotron X-ray diffraction J. Mol. Biol. 273 1997 729 739
-
(1997)
J. Mol. Biol.
, vol.273
, pp. 729-739
-
-
Sunde, M.1
Serpell, L.C.2
Bartlam, M.3
Fraser, P.E.4
Pepys, M.B.5
Blake, C.C.F.6
-
3
-
-
1842786897
-
Core and heterogeneity of beta(2)-microglobulin amyloid fibrils as revealed by H/D exchange
-
K. Yamaguchi, H. Katou, M. Hoshino, K. Hasegawa, H. Naiki, and Y. Goto Core and heterogeneity of beta(2)-microglobulin amyloid fibrils as revealed by H/D exchange J. Mol. Biol. 338 2004 559 571
-
(2004)
J. Mol. Biol.
, vol.338
, pp. 559-571
-
-
Yamaguchi, K.1
Katou, H.2
Hoshino, M.3
Hasegawa, K.4
Naiki, H.5
Goto, Y.6
-
4
-
-
0036242430
-
Mapping the core of the beta(2)-microglobulin amyloid fibril by H/D exchange
-
M. Hoshino, H. Katou, Y. Hagihara, K. Hasegawa, H. Naiki, and Y. Goto Mapping the core of the beta(2)-microglobulin amyloid fibril by H/D exchange Nature Struct. Biol. 9 2002 332 336
-
(2002)
Nature Struct. Biol.
, vol.9
, pp. 332-336
-
-
Hoshino, M.1
Katou, H.2
Hagihara, Y.3
Hasegawa, K.4
Naiki, H.5
Goto, Y.6
-
5
-
-
0037059764
-
Investigation of a peptide responsible for amyloid fibril formation of beta(2)-microglobulin by achromobacter protease I
-
G.V. Kozhukh, Y. Hagihara, T. Kawakami, K. Hasegawa, H. Naiki, and Y. Goto Investigation of a peptide responsible for amyloid fibril formation of beta(2)-microglobulin by achromobacter protease I J. Biol. Chem. 277 2002 1310 1315
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 1310-1315
-
-
Kozhukh, G.V.1
Hagihara, Y.2
Kawakami, T.3
Hasegawa, K.4
Naiki, H.5
Goto, Y.6
-
6
-
-
0345237917
-
Amyloidogenic synthetic peptides of β2 microglobulin-a role of the disulfide bond
-
K. Hasagawa, Y. Ohhashi, I. Yamaguchi, N. Takahashi, S. Tsutsumi, Y. Goto, F. Gejyo, and H. Naiki Amyloidogenic synthetic peptides of β2 microglobulin-a role of the disulfide bond Biochem. Biophys. Res. Commun. 304 2003 101 106
-
(2003)
Biochem. Biophys. Res. Commun.
, vol.304
, pp. 101-106
-
-
Hasagawa, K.1
Ohhashi, Y.2
Yamaguchi, I.3
Takahashi, N.4
Tsutsumi, S.5
Goto, Y.6
Gejyo, F.7
Naiki, H.8
-
7
-
-
0032484151
-
Solution conformations and thermodynamics of structured peptides: Molecular dynamics simulation with an implicit solvation model
-
M. Schaefer, C. Bartels, and M. Karplus Solution conformations and thermodynamics of structured peptides: molecular dynamics simulation with an implicit solvation model J. Mol. Biol. 284 1998 835 848
-
(1998)
J. Mol. Biol.
, vol.284
, pp. 835-848
-
-
Schaefer, M.1
Bartels, C.2
Karplus, M.3
-
9
-
-
0033529908
-
Molecular dynamics simulations of unfolding and refolding of a β-hairpin fragment of protein G
-
V.S. Pande, and D.S. Rokhsar Molecular dynamics simulations of unfolding and refolding of a β-hairpin fragment of protein G Proc. Natl. Acad. Sci. USA 96 1999 9062 9067
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 9062-9067
-
-
Pande, V.S.1
Rokhsar, D.S.2
-
11
-
-
0032764074
-
Dynamics and thermodynamics of β-hairpin assembly: Insights from various simulation techniques
-
A. Kolinski, B. Ilkowski, and J. Skolnick Dynamics and thermodynamics of β-hairpin assembly: insights from various simulation techniques Biophys. J. 77 1999 2942 2952
-
(1999)
Biophys. J.
, vol.77
, pp. 2942-2952
-
-
Kolinski, A.1
Ilkowski, B.2
Skolnick, J.3
-
13
-
-
0035865992
-
Exploring the energy landscape of a β hairpin in explicit solvent
-
A.E. García, and K.Y. Sanbonmatsu Exploring the energy landscape of a β hairpin in explicit solvent Proteins: Struct. Funct. Genet. 42 2001 345 354
-
(2001)
Proteins: Struct. Funct. Genet.
, vol.42
, pp. 345-354
-
-
García, A.E.1
Sanbonmatsu, K.Y.2
-
14
-
-
0035909921
-
The free energy landscape for β hairpin folding in explicit water
-
R. Zhou, B.J. Berne, and R. Germain The free energy landscape for β hairpin folding in explicit water Proc. Natl. Acad. Sci. USA 98 2001 14931 14936
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 14931-14936
-
-
Zhou, R.1
Berne, B.J.2
Germain, R.3
-
15
-
-
0036784640
-
Conformational transition states of a β-hairpin peptide between the ordered and disordered conformations in explicit water
-
N. Kamiya, J. Higo, and H. Nakamura Conformational transition states of a β-hairpin peptide between the ordered and disordered conformations in explicit water Protein Sci. 11 2002 2297 2307
-
(2002)
Protein Sci.
, vol.11
, pp. 2297-2307
-
-
Kamiya, N.1
Higo, J.2
Nakamura, H.3
-
16
-
-
1442287309
-
Comparisons of force fields for proteins by generalized-ensemble simulations
-
T. Yoda, Y. Sugita, and Y. Okamoto Comparisons of force fields for proteins by generalized-ensemble simulations Chem. Phys. Lett. 386 2004 460 467
-
(2004)
Chem. Phys. Lett.
, vol.386
, pp. 460-467
-
-
Yoda, T.1
Sugita, Y.2
Okamoto, Y.3
-
17
-
-
8644224198
-
Secondary-structure preferences of force fields for proteins evaluated by generalized-ensemble simulations
-
T. Yoda, Y. Sugita, and Y. Okamoto Secondary-structure preferences of force fields for proteins evaluated by generalized-ensemble simulations Chem. Phys. 307 2004 269 283
-
(2004)
Chem. Phys.
, vol.307
, pp. 269-283
-
-
Yoda, T.1
Sugita, Y.2
Okamoto, Y.3
-
18
-
-
0034864528
-
Generalized-ensemble algorithms for molecular simulations of biopolymers
-
A. Mitsutake, Y. Sugita, and Y. Okamoto Generalized-ensemble algorithms for molecular simulations of biopolymers Biopolymers (Pept. Sci.) 60 2001 96 123
-
(2001)
Biopolymers (Pept. Sci.)
, vol.60
, pp. 96-123
-
-
Mitsutake, A.1
Sugita, Y.2
Okamoto, Y.3
-
19
-
-
0001616080
-
Replica-exchange molecular dynamics method for protein folding
-
Y. Sugita, and Y. Okamoto Replica-exchange molecular dynamics method for protein folding Chem. Phys. Lett. 314 1999 141 151
-
(1999)
Chem. Phys. Lett.
, vol.314
, pp. 141-151
-
-
Sugita, Y.1
Okamoto, Y.2
-
20
-
-
0030516672
-
Exchange Monte Carlo method and application to spin glass simulations
-
K. Hukushima, and K. Nemoto Exchange Monte Carlo method and application to spin glass simulations J. Phys. Soc. Jpn. 65 1996 1604 1608
-
(1996)
J. Phys. Soc. Jpn.
, vol.65
, pp. 1604-1608
-
-
Hukushima, K.1
Nemoto, K.2
-
21
-
-
0020997912
-
Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
-
W. Kabsch, and C. Sander Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features Biopolymers 22 1983 2577 2637
-
(1983)
Biopolymers
, vol.22
, pp. 2577-2637
-
-
Kabsch, W.1
Sander, C.2
-
22
-
-
0002098417
-
The development/application of a 'minimalist' organic/biochemical molecular mechanic force field using a combination of ab initio calculations and experimental data
-
A. Wilkinson P. Weiner W.F. van Gunsteren Elsevier Amsterdam
-
P.A. Kollman, R. Dixon, W. Cornell, T. Fox, C. Chipot, and A. Pohorille The development/application of a 'minimalist' organic/biochemical molecular mechanic force field using a combination of ab initio calculations and experimental data A. Wilkinson P. Weiner W.F. van Gunsteren Computer Simulation of Biomolecular Systems Vol. 3 1997 Elsevier Amsterdam 83 96
-
(1997)
Computer Simulation of Biomolecular Systems
, vol.3
, pp. 83-96
-
-
Kollman, P.A.1
Dixon, R.2
Cornell, W.3
Fox, T.4
Chipot, C.5
Pohorille, A.6
-
23
-
-
0004016501
-
Comparison of simple potential functions for simulating liquid water
-
W.L. Jorgensen, J. Chandrasekhar, J.D. Madura, R.W. Impey, and M.L. Klein Comparison of simple potential functions for simulating liquid water J. Chem. Phys. 79 1983 926 935
-
(1983)
J. Chem. Phys.
, vol.79
, pp. 926-935
-
-
Jorgensen, W.L.1
Chandrasekhar, J.2
Madura, J.D.3
Impey, R.W.4
Klein, M.L.5
-
24
-
-
0034604105
-
A surprising simplicity to protein folding
-
D. Baker A surprising simplicity to protein folding Nature 405 2000 39 42
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
25
-
-
0033687195
-
Helix-coil transitions of amino-acid homo-oligomers in aqueous solution studied by multicanonical simulations
-
A. Mitsutake, and Y. Okamoto Helix-coil transitions of amino-acid homo-oligomers in aqueous solution studied by multicanonical simulations J. Chem. Phys. 112 2000 10638 10647
-
(2000)
J. Chem. Phys.
, vol.112
, pp. 10638-10647
-
-
Mitsutake, A.1
Okamoto, Y.2
-
26
-
-
0014226043
-
Thermodynamics of the unfolding of β-lactoglobulin
-
P.L. Pace, and C. Tanford Thermodynamics of the unfolding of β-lactoglobulin Biochemistry 7 1968 198 208
-
(1968)
Biochemistry
, vol.7
, pp. 198-208
-
-
Pace, P.L.1
Tanford, C.2
-
27
-
-
0038502170
-
Folding dynamics and mechanism of beta-hairpin formation
-
V. Munoz, P.A. Thompson, J. Hofrichter, and W.A. Eaton Folding dynamics and mechanism of beta-hairpin formation Nature 390 1997 196 199
-
(1997)
Nature
, vol.390
, pp. 196-199
-
-
Munoz, V.1
Thompson, P.A.2
Hofrichter, J.3
Eaton, W.A.4
-
28
-
-
0000079910
-
Establishment of a kinetic model of dialysis-related amyloid fibril extension in vitro
-
H. Naiki, N. Hashimoto, S. Suzuki, H. Kimura, K. Nakakuki, and F. Gejyo Establishment of a kinetic model of dialysis-related amyloid fibril extension in vitro Amyloid: Int. J. Exp. Clin. Invest. 4 1997 223 232
-
(1997)
Amyloid: Int. J. Exp. Clin. Invest.
, vol.4
, pp. 223-232
-
-
Naiki, H.1
Hashimoto, N.2
Suzuki, S.3
Kimura, H.4
Nakakuki, K.5
Gejyo, F.6
-
29
-
-
0037465708
-
Insights into the amyloid folding problem from solid-state NMR
-
R. Tycko Insights into the amyloid folding problem from solid-state NMR Biochemistry 42 2003 3151 3159
-
(2003)
Biochemistry
, vol.42
, pp. 3151-3159
-
-
Tycko, R.1
-
31
-
-
1642297346
-
Core structure of amyloid fibril proposed from IR-microscope linear dichroism
-
H. Hiramatsu, Y. Goto, H. Naiki, and T. Kitagawa Core structure of amyloid fibril proposed from IR-microscope linear dichroism J. Am. Chem. Soc. 126 2004 3008 3009
-
(2004)
J. Am. Chem. Soc.
, vol.126
, pp. 3008-3009
-
-
Hiramatsu, H.1
Goto, Y.2
Naiki, H.3
Kitagawa, T.4
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