메뉴 건너뛰기




Volumn 96, Issue 5, 2005, Pages 347-354

A robust characterization of retinoic acid response elements based on a comparison of sites in three species

Author keywords

Hormone response elements; Regulatory conservation; Retinoic acid; Retinoic acid response elements; Transcription regulation

Indexed keywords

RETINOIC ACID; SPACER DNA;

EID: 25644452125     PISSN: 09600760     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jsbmb.2005.05.005     Document Type: Article
Times cited : (105)

References (51)
  • 2
    • 0029440036 scopus 로고
    • Transcription factors 3: Nuclear receptors
    • H. Gronemeyer, and V. Laudet Transcription factors 3: nuclear receptors Protein Profile 2 1995 1173 1308
    • (1995) Protein Profile , vol.2 , pp. 1173-1308
    • Gronemeyer, H.1    Laudet, V.2
  • 3
    • 0036847229 scopus 로고    scopus 로고
    • Gene expression regulation by retinoic acid
    • J.E. Balmer, and R. Blomhoff Gene expression regulation by retinoic acid J. Lipid Res. 43 2002 1773 1808
    • (2002) J. Lipid Res. , vol.43 , pp. 1773-1808
    • Balmer, J.E.1    Blomhoff, R.2
  • 5
    • 0037100636 scopus 로고    scopus 로고
    • Statistical significance of clusters of motifs represented by position specific scoring matrices in nucieotide sequences
    • M.C. Frith, J.L. Spouge, U. Hansen, and Z. Weng Statistical significance of clusters of motifs represented by position specific scoring matrices in nucieotide sequences Nucleic Acids Res. 30 2002 3214 3224
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3214-3224
    • Frith, M.C.1    Spouge, J.L.2    Hansen, U.3    Weng, Z.4
  • 7
    • 0033976523 scopus 로고    scopus 로고
    • Discovery and modeling of transcriptional regulatory regions
    • J.W. Fickett, and W.W. Wasserman Discovery and modeling of transcriptional regulatory regions Curr. Opin. Biotechnol. 11 2000 19 24
    • (2000) Curr. Opin. Biotechnol. , vol.11 , pp. 19-24
    • Fickett, J.W.1    Wasserman, W.W.2
  • 9
    • 0037380723 scopus 로고    scopus 로고
    • Comparative genomics: Genome-wide analysis in metazoan eukaryotes
    • A. Ureta-Vidal, L. Ettwiller, and E. Birney Comparative genomics: genome-wide analysis in metazoan eukaryotes Nat. Rev. Genet. 4 2003 251 262
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 251-262
    • Ureta-Vidal, A.1    Ettwiller, L.2    Birney, E.3
  • 10
    • 0026742534 scopus 로고
    • Multiplicity generates diversity in the retinoic acid signalling pathways
    • M. Leid, P. Kastner, and P. Chambon Multiplicity generates diversity in the retinoic acid signalling pathways Trends Biochem. Sci. 17 1992 427 433
    • (1992) Trends Biochem. Sci. , vol.17 , pp. 427-433
    • Leid, M.1    Kastner, P.2    Chambon, P.3
  • 11
    • 0029794132 scopus 로고    scopus 로고
    • A decade of molecular biology of retinoic acid receptors
    • P. Chambon A decade of molecular biology of retinoic acid receptors FASEB J. 10 1996 940 954
    • (1996) FASEB J. , vol.10 , pp. 940-954
    • Chambon, P.1
  • 12
    • 0024337858 scopus 로고
    • Determinants of target gene specificity for steroid/thyroid hormone receptors
    • K. Umesono, and R.M. Evans Determinants of target gene specificity for steroid/thyroid hormone receptors Cell 57 1989 1139 1146
    • (1989) Cell , vol.57 , pp. 1139-1146
    • Umesono, K.1    Evans, R.M.2
  • 14
    • 0028785863 scopus 로고
    • Widely spaced, directly repeated PuGGTCA elements act as promiscuous enhancers for different classes of nuclear receptors
    • S. Kato, H. Sasaki, M. Suzawa, S. Masushige, L. Tora, P. Chambon, and H. Gronemeyer Widely spaced, directly repeated PuGGTCA elements act as promiscuous enhancers for different classes of nuclear receptors Mol. Cell Biol. 15 1995 5858 5867
    • (1995) Mol. Cell Biol. , vol.15 , pp. 5858-5867
    • Kato, S.1    Sasaki, H.2    Suzawa, M.3    Masushige, S.4    Tora, L.5    Chambon, P.6    Gronemeyer, H.7
  • 15
    • 0025860278 scopus 로고
    • The late retinoic acid induction of laminin Bl gene transcription involves RAR binding to the responsive element
    • G. Vasios, S. Mader, J.D. Gold, M. Leid, Y. Lutz, M.P. Gaub, P. Chambon, and L. Gudas The late retinoic acid induction of laminin Bl gene transcription involves RAR binding to the responsive element EMBO J. 10 1991 1149 1158
    • (1991) EMBO J. , vol.10 , pp. 1149-1158
    • Vasios, G.1    Mader, S.2    Gold, J.D.3    Leid, M.4    Lutz, Y.5    Gaub, M.P.6    Chambon, P.7    Gudas, L.8
  • 16
    • 0034998281 scopus 로고    scopus 로고
    • Cis-Acting DNA regulatory elements, including the retinoic acid response element, are required for tissue specific laminin Bl promoter/lacZ expression in transgenic mice
    • K.A. Sharif, C. Li, and L.J. Gudas cis-Acting DNA regulatory elements, including the retinoic acid response element, are required for tissue specific laminin Bl promoter/lacZ expression in transgenic mice Mech. Dev. 103 2001 13 25
    • (2001) Mech. Dev. , vol.103 , pp. 13-25
    • Sharif, K.A.1    Li, C.2    Gudas, L.J.3
  • 17
    • 0034611626 scopus 로고    scopus 로고
    • The Etsl proto-oncogene is upregulated by retinoic acid: Characterization of a functional retinoic acid response element in the Etsl promoter
    • A. Raouf, V. Li, I. Kola, D.K. Watson, and A. Seth The Etsl proto-oncogene is upregulated by retinoic acid: characterization of a functional retinoic acid response element in the Etsl promoter Oncogene 19 2000 1969 1974
    • (2000) Oncogene , vol.19 , pp. 1969-1974
    • Raouf, A.1    Li, V.2    Kola, I.3    Watson, D.K.4    Seth, A.5
  • 18
    • 0027974063 scopus 로고
    • Characterization of retinoic acid- and cell-dependent sequences which regulate zif268 gene expression in osteoblastic cells
    • L.J. Suva, D.A. Towler, S. Harada, M.P. Gaub, and G.A. Rodan Characterization of retinoic acid- and cell-dependent sequences which regulate zif268 gene expression in osteoblastic cells Mol. Endocrinol. 8 1994 1507 1520
    • (1994) Mol. Endocrinol. , vol.8 , pp. 1507-1520
    • Suva, L.J.1    Towler, D.A.2    Harada, S.3    Gaub, M.P.4    Rodan, G.A.5
  • 19
    • 0027389116 scopus 로고
    • Multiple parameters control the selectivity of nuclear receptors for their response elements. Selectivity and promiscuity in response element recognition by retinoic acid receptors and retinoid X receptors
    • S. Mader, P. Leroy, J.Y. Chen, and P. Chambon Multiple parameters control the selectivity of nuclear receptors for their response elements. Selectivity and promiscuity in response element recognition by retinoic acid receptors and retinoid X receptors J. Biol. Chem. 268 1993 591 600
    • (1993) J. Biol. Chem. , vol.268 , pp. 591-600
    • Mader, S.1    Leroy, P.2    Chen, J.Y.3    Chambon, P.4
  • 20
    • 0027202156 scopus 로고
    • Differential orientations of the DNA-binding domain and carboxy-terminal dimerization interface regulate binding site selection by nuclear receptor heterodimers
    • R. Kurokawa, V.C. Yu, A. Naar, S. Kyakumoto, Z. Han, S. Silverman, M.G. Rosenfeld, and C.K. Glass Differential orientations of the DNA-binding domain and carboxy-terminal dimerization interface regulate binding site selection by nuclear receptor heterodimers Genes Dev. 7 1993 1423 1435
    • (1993) Genes Dev. , vol.7 , pp. 1423-1435
    • Kurokawa, R.1    Yu, V.C.2    Naar, A.3    Kyakumoto, S.4    Han, Z.5    Silverman, S.6    Rosenfeld, M.G.7    Glass, C.K.8
  • 21
    • 0029736983 scopus 로고    scopus 로고
    • Two distinct dimerization interfaces differentially modulate target gene specificity of nuclear hormone receptors
    • T. Perlmann, K. Umesono, P.N. Rangarajan, B.M. Forman, and R.M. Evans Two distinct dimerization interfaces differentially modulate target gene specificity of nuclear hormone receptors Mol. Endocrinol. 10 1996 958 966
    • (1996) Mol. Endocrinol. , vol.10 , pp. 958-966
    • Perlmann, T.1    Umesono, K.2    Rangarajan, P.N.3    Forman, B.M.4    Evans, R.M.5
  • 22
    • 0028294902 scopus 로고
    • Dimerization interfaces formed between the DNA binding domains determine the cooperative binding of RXR/RAR and RXR/TR heterodimers to DR5 and DR4 elements
    • C. Zechel, X.Q. Shen, P. Chambon, and H. Gronemeyer Dimerization interfaces formed between the DNA binding domains determine the cooperative binding of RXR/RAR and RXR/TR heterodimers to DR5 and DR4 elements EMBO J. 13 1994 1414 1424
    • (1994) EMBO J. , vol.13 , pp. 1414-1424
    • Zechel, C.1    Shen, X.Q.2    Chambon, P.3    Gronemeyer, H.4
  • 24
    • 0015908037 scopus 로고
    • Nature of nuclear acceptor sites for glucocorticoid- and estrogen-receptor complexes
    • S.J. Higgins, G.G. Rousseau, J.D. Baxter, and G.M. Tomkins Nature of nuclear acceptor sites for glucocorticoid- and estrogen-receptor complexes J. Biol. Chem. 248 1973 5873 5879
    • (1973) J. Biol. Chem. , vol.248 , pp. 5873-5879
    • Higgins, S.J.1    Rousseau, G.G.2    Baxter, J.D.3    Tomkins, G.M.4
  • 25
    • 0015911447 scopus 로고
    • Early events in glucocorticoid action. Activation of the steroid receptor and its subsequent specific nuclear binding studied in a cell-free system
    • S.J. Higgins, G.G. Rousseau, J.D. Baxter, and G.M. Tomkins Early events in glucocorticoid action. Activation of the steroid receptor and its subsequent specific nuclear binding studied in a cell-free system J. Biol. Chem. 248 1973 5866 5872
    • (1973) J. Biol. Chem. , vol.248 , pp. 5866-5872
    • Higgins, S.J.1    Rousseau, G.G.2    Baxter, J.D.3    Tomkins, G.M.4
  • 27
    • 0016684222 scopus 로고
    • Glucocorticoid-receptor interaction and induction of murine mammary tumor virus
    • H.A. Young, E.M. Scolnick, and W.P. Parks Glucocorticoid-receptor interaction and induction of murine mammary tumor virus J. Biol. Chem. 250 1975 3337 3343
    • (1975) J. Biol. Chem. , vol.250 , pp. 3337-3343
    • Young, H.A.1    Scolnick, E.M.2    Parks, W.P.3
  • 28
    • 0019775226 scopus 로고
    • Mammary tumor virus DNA contains sequences required for its hormone-regulated transcription
    • D.S. Ucker, S.R. Ross, and K.R. Yamamoto Mammary tumor virus DNA contains sequences required for its hormone-regulated transcription Cell 27 1981 257 266
    • (1981) Cell , vol.27 , pp. 257-266
    • Ucker, D.S.1    Ross, S.R.2    Yamamoto, K.R.3
  • 30
    • 0020393649 scopus 로고
    • Specific binding of the glucocorticoid-receptor complex to the mouse mammary tumor proviral promoter region
    • M. Pfahl Specific binding of the glucocorticoid-receptor complex to the mouse mammary tumor proviral promoter region Cell 31 1982 475 482
    • (1982) Cell , vol.31 , pp. 475-482
    • Pfahl, M.1
  • 31
    • 0020965007 scopus 로고
    • DNA sequences bound specifically by glucocorticoid receptor in vitro render a heterologous promoter hormone responsive in vivo
    • V.L. Chandler, B.A. Maler, and K.R. Yamamoto DNA sequences bound specifically by glucocorticoid receptor in vitro render a heterologous promoter hormone responsive in vivo Cell 33 1983 489 499
    • (1983) Cell , vol.33 , pp. 489-499
    • Chandler, V.L.1    Maler, B.A.2    Yamamoto, K.R.3
  • 32
    • 0020568696 scopus 로고
    • The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus
    • C. Scheidereit, S. Geisse, H.M. Westphal, and M. Beato The glucocorticoid receptor binds to defined nucleotide sequences near the promoter of mouse mammary tumour virus Nature 304 1983 749 752
    • (1983) Nature , vol.304 , pp. 749-752
    • Scheidereit, C.1    Geisse, S.2    Westphal, H.M.3    Beato, M.4
  • 33
    • 0023483399 scopus 로고
    • A human retinoic acid receptor which belongs to the family of nuclear receptors
    • M. Petkovich, N.J. Brand, A. Krust, and P. Chambon A human retinoic acid receptor which belongs to the family of nuclear receptors Nature 330 1987 444 450
    • (1987) Nature , vol.330 , pp. 444-450
    • Petkovich, M.1    Brand, N.J.2    Krust, A.3    Chambon, P.4
  • 34
    • 0023756692 scopus 로고
    • Retinoic acid and thyroid hormone induce gene expression through a common responsive element
    • K. Umesono, V. Giguere, C.K. Glass, M.G. Rosenfeld, and R.M. Evans Retinoic acid and thyroid hormone induce gene expression through a common responsive element Nature 336 1988 262 265
    • (1988) Nature , vol.336 , pp. 262-265
    • Umesono, K.1    Giguere, V.2    Glass, C.K.3    Rosenfeld, M.G.4    Evans, R.M.5
  • 35
    • 0024465135 scopus 로고
    • Positive and negative regulation of gene transcription by a retinoic acid-thyroid hormone receptor heterodimer
    • C.K. Glass, S.M. Lipkin, O.V. Devary, and M.G. Rosenfeld Positive and negative regulation of gene transcription by a retinoic acid-thyroid hormone receptor heterodimer Cell 59 1989 697 708
    • (1989) Cell , vol.59 , pp. 697-708
    • Glass, C.K.1    Lipkin, S.M.2    Devary, O.V.3    Rosenfeld, M.G.4
  • 36
    • 0024351654 scopus 로고
    • A retinoic acid-responsive element is present in the 5′ flanking region of the laminin B1 gene
    • G.W. Vasios, J.D. Gold, M. Petkovich, P. Chambon, and L.J. Gudas A retinoic acid-responsive element is present in the 5′ flanking region of the laminin B1 gene Proc. Natl. Acad. Sci. U.S.A. 86 1989 9099 9103
    • (1989) Proc. Natl. Acad. Sci. U.S.A. , vol.86 , pp. 9099-9103
    • Vasios, G.W.1    Gold, J.D.2    Petkovich, M.3    Chambon, P.4    Gudas, L.J.5
  • 37
    • 0025181051 scopus 로고
    • Structure of the human laminin B1 chain gene
    • R. Vuolteenaho, L.T. Chow, and K. Tryggvason Structure of the human laminin B1 chain gene J. Biol. Chem. 265 1990 15611 15616
    • (1990) J. Biol. Chem. , vol.265 , pp. 15611-15616
    • Vuolteenaho, R.1    Chow, L.T.2    Tryggvason, K.3
  • 38
    • 0025098239 scopus 로고
    • Identification of a retinoic acid responsive element in the retinoic acid receptor beta gene
    • H. de The, M.M. Vivanco-Ruiz, P. Tiollais, H. Stunnenberg, and A. Dejean Identification of a retinoic acid responsive element in the retinoic acid receptor beta gene Nature 343 1990 177 180
    • (1990) Nature , vol.343 , pp. 177-180
    • De The, H.1    Vivanco-Ruiz, M.M.2    Tiollais, P.3    Stunnenberg, H.4    Dejean, A.5
  • 39
    • 0025044949 scopus 로고
    • Characterization of an autoregulated response element in the mouse retinoic acid receptor type beta gene
    • H.M. Sucov, K.K. Murakami, and R.M. Evans Characterization of an autoregulated response element in the mouse retinoic acid receptor type beta gene Proc. Natl. Acad. Sci. U.S.A. 87 1990 5392 5396
    • (1990) Proc. Natl. Acad. Sci. U.S.A. , vol.87 , pp. 5392-5396
    • Sucov, H.M.1    Murakami, K.K.2    Evans, R.M.3
  • 41
    • 0025978645 scopus 로고
    • Retinoic acid response element in the human alcohol dehydrogenase gene ADH3: Implications for regulation of retinoic acid synthesis
    • G. Duester, M.L. Shean, M.S. McBride, and M.J. Stewart Retinoic acid response element in the human alcohol dehydrogenase gene ADH3: implications for regulation of retinoic acid synthesis Mol. Cell Biol. 11 1991 1638 1646
    • (1991) Mol. Cell Biol. , vol.11 , pp. 1638-1646
    • Duester, G.1    Shean, M.L.2    McBride, M.S.3    Stewart, M.J.4
  • 42
    • 0025242336 scopus 로고
    • Mapping of a retinoic acid-responsive element in the promoter region of the complement factor H gene
    • P. Munoz-Canoves, D.P. Vik, and B.F. Tack Mapping of a retinoic acid-responsive element in the promoter region of the complement factor H gene J. Biol. Chem. 265 1990 20065 20068
    • (1990) J. Biol. Chem. , vol.265 , pp. 20065-20068
    • Munoz-Canoves, P.1    Vik, D.P.2    Tack, B.F.3
  • 43
    • 0029153564 scopus 로고
    • The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element
    • G. Vansant, and W.F. Reynolds The consensus sequence of a major Alu subfamily contains a functional retinoic acid response element Proc. Natl. Acad. Sci. U.S.A. 92 1995 8229 8233
    • (1995) Proc. Natl. Acad. Sci. U.S.A. , vol.92 , pp. 8229-8233
    • Vansant, G.1    Reynolds, W.F.2
  • 45
    • 0029954388 scopus 로고    scopus 로고
    • The receptor-DNA complex determines the retinoid response: A mechanism for the diversification of the ligand signal
    • N. Vista-Picard, P.D. Hobbs, M. Pfahl, M.I. Dawson, and M. Pfahl The receptor-DNA complex determines the retinoid response: a mechanism for the diversification of the ligand signal Mol. Cell Biol. 16 1996 4137 4146
    • (1996) Mol. Cell Biol. , vol.16 , pp. 4137-4146
    • Vista-Picard, N.1    Hobbs, P.D.2    Pfahl, M.3    Dawson, M.I.4    Pfahl, M.5
  • 46
    • 0032126768 scopus 로고    scopus 로고
    • Initiation of rhombomeric Hoxb4 expression requires induction by somites and a retinoid pathway
    • A. Gould, N. Itasaki, and R. Krumlauf Initiation of rhombomeric Hoxb4 expression requires induction by somites and a retinoid pathway Neuron 21 1998 39 51
    • (1998) Neuron , vol.21 , pp. 39-51
    • Gould, A.1    Itasaki, N.2    Krumlauf, R.3
  • 47
    • 0037439084 scopus 로고    scopus 로고
    • Retinoids regulate the anterior expression boundaries of 5′ Hoxb genes in posterior hindbrain
    • T. Oosterveen, K. Niederreither, P. Dolle, P. Chambon, F. Meijlink, and J. Deschamps Retinoids regulate the anterior expression boundaries of 5′ Hoxb genes in posterior hindbrain EMBO J. 22 2003 262 269
    • (2003) EMBO J. , vol.22 , pp. 262-269
    • Oosterveen, T.1    Niederreither, K.2    Dolle, P.3    Chambon, P.4    Meijlink, F.5    Deschamps, J.6
  • 49
    • 0028065238 scopus 로고
    • A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1
    • H. Marshall, M. Studer, H. Popperl, S. Aparicio, A. Kuroiwa, S. Brenner, and R. Krumlauf A conserved retinoic acid response element required for early expression of the homeobox gene Hoxb-1 Nature 370 1994 567 571
    • (1994) Nature , vol.370 , pp. 567-571
    • Marshall, H.1    Studer, M.2    Popperl, H.3    Aparicio, S.4    Kuroiwa, A.5    Brenner, S.6    Krumlauf, R.7
  • 50
    • 0028096213 scopus 로고
    • The directly repeated RG(G/T)TCA motifs of the rat and mouse cellular retinol-binding protein II genes are promiscuous binding sites for RAR, RXR, HNF-4. and ARP-1 homo- and heterodimers
    • H. Nakshatri, and P. Chambon The directly repeated RG(G/T)TCA motifs of the rat and mouse cellular retinol-binding protein II genes are promiscuous binding sites for RAR, RXR, HNF-4. and ARP-1 homo- and heterodimers J. Biol. Chem. 269 1994 890 902
    • (1994) J. Biol. Chem. , vol.269 , pp. 890-902
    • Nakshatri, H.1    Chambon, P.2
  • 51
    • 0038699226 scopus 로고    scopus 로고
    • Vertebrate caudal gene expression gradients investigated by use of chick cdx-A/lacZ and mouse cdx-1/lacZ reporters in transgenic mouse embryos: Evidence for an intron enhancer
    • S.J. Gaunt, D. Drage, and A. Cockley Vertebrate caudal gene expression gradients investigated by use of chick cdx-A/lacZ and mouse cdx-1/lacZ reporters in transgenic mouse embryos: evidence for an intron enhancer Mech. Dev. 120 2003 573 586
    • (2003) Mech. Dev. , vol.120 , pp. 573-586
    • Gaunt, S.J.1    Drage, D.2    Cockley, A.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.