From an inactive prokaryotic SOD homologue to an active protein through site-directed mutagenesis

Journal of the American Chemical Society

Volumn 127, Issue 38, 2005, Pages 13287-13292

  Banci, Lucia ^a   Benvenuti, Manuela ^b   Bertini, Ivano ^a   Cabelli, Diane E ^c   Calderone, Vito ^a,b   Fantoni, Adele ^a   Mangani, Stefano ^a,b   Migliardi, Manuele ^a   Viezzoli, Maria Silvia ^a  

^a UNIVERSITY OF FLORENCE   (Italy)

^b UNIVERSITY OF SIENA   (Italy)

^c BROOKHAVEN NATIONAL LABORATORY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIA; BIODIVERSITY; CATALYSIS; CHELATION; CONFORMATIONS; COPPER; DIMERS; PROTEINS;

EUKARYOTES; LIGANDS; PROKARYOTES; PROTEIN SEQUENCES;

MUTAGENESIS;

COPPER ZINC SUPEROXIDE DISMUTASE; LIGAND; SUPEROXIDE DISMUTASE;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS SUBTILIS; CATALYSIS; CONFORMATIONAL TRANSITION; ENZYME ACTIVITY; PROKARYOTE; PROTEIN ANALYSIS; PROTEIN CONFORMATION; SITE DIRECTED MUTAGENESIS; SOLID STATE; STRUCTURE ANALYSIS;

BACILLUS SUBTILIS; COPPER; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; GENE EXPRESSION REGULATION, ENZYMOLOGIC; HUMANS; LIGANDS; MODELS, MOLECULAR; MUTAGENESIS, SITE-DIRECTED; PROKARYOTIC CELLS; PROTEIN STRUCTURE, TERTIARY; SUPEROXIDE DISMUTASE; ZINC;

EID: 25444481874     PISSN: 00027863     EISSN: None     Source Type: Journal    
DOI: 10.1021/ja052790o     Document Type: Article

References (50)

1. Mann, T.; Keilin, D. Proc. R. Soc. London 1938, 126, 303.
2. McCord, J. M.; Fridovich, I. J. Biol. Chem. 1969, 244, 6049-6055.
3. Getzoff, E. D.; Tainer, J. A.; Weiner, P. K.; Kollman, P. A.; Richardson, J. S.; Richardson, D. C. Nature 1983, 306, 287-290.
4. Sines, J. J.; Allison, S. A.; McCammon, J. A. Biochemistry 1990, 29, 9403-9412.
5. Getzoff, E. D.; Tainer, J. A.; Stempien, M. M.; Bell, G. I.; Hallewell, R. A. Proteins: Struct., Funct., Genet. 1989, 5, 322-336.
6. Chang, L. Y.; Slot, J. W.; Geuza, H. J.; Crapo, J. D. J. Cell Biol. 1988, 107, 2169-2179.
7. Keller, G.-A.; Warner, T. G.; Steimer, K. S.; Hallewell, R. A. Proc. Natl. Acad. Sci. U.S.A. 1991, 88, 7381-7385.
8. Sturtz, L. A.; Diekert, K.; Jensen, L. T.; Lill, R.; Culotta, V. C. J. Biol. Chem. 2001, 276, 38084-38089.
9. Kroll, J. S.; Langford, P. R.; Loynds, B. M. J. Bacteriol. 1991, 173, 7449-7457.
10. Steinman, D. H.; Ely, B. J. Bacteriol. 1990, 172, 2901-2910.
11. Banci, L.; Bertini, I.; Calderone, V.; Cramaro, F.; Del Conte, R.; Fantoni, A.; Mangani, S.; Quattrone, A.; Viezzoli, M. S. Proc. Natl. Acad. Sci. U.S.A. 2005, 102, 7541-7546.
12. Redford, S. M.; McRee, D. E.; Getzoff, E. D.; Steinman, D. H.; Tainer, J. A. J. Mol. Biol. 1990, 212, 449-451.
13. Pesce, A.; Capasso, C.; Battistoni, A.; Folcarelli, S.; Rotilio, G.; Desideri, A.; Bolognesi, M. J. Mol. Biol. 1997, 274, 408-420.
14. Pesce, A.; Battistoni, A.; Stroppolo, M. E.; Polizio, F.; Nardini, M.; Kroll, J. S.; Langford, P. R.; O'Neil, J. D.; Seite, M.; Desideri, A.; Bolognesi, M. J. Mol. Biol. 2000, 302, 465-478.
15. Forest, E.; Langford, P. R.; Kroll, J. S.; Getroff, E. D. J. Mol. Biol. 2000, 296, 145-153.
16. Banci, L.; Bertini, I.; Cramaro, F.; Del Conte, R.; Viezzoli, M. S. Biochemistry 2003, 42, 9543-9553.
17. Banci, L.; Bertini, I.; Cantini, F.; D'Onofrio, M.; Viezzoli, M. S. Protein Sci. 2002, 11, 2479-2492.
18. Shipp, E.; Cantini, F.; Bertini, I.; Valentine, J. S.; Banci, L. Biochemistry 2003, 42, 1890-1899.
19. Fielden, E. M.; Roberts, P. B.; Bray, R. C.; Lowe, D. J.; Mautner, G. N.; Rotilio, G.; Calabrese, L. Biochem. J. 1974, 139, 49-60.
20. Pantoliano, M. W.; Valentine, J. S.; Nafie, L. A. J. Am. Chem. Soc. 1982, 104, 6310-6317.
21. Whittaker, M. M.; Kersten, P. J.; Nakamura, N.; Sanders-Loehr, J.; Schweizer, E. S.; Whittaker, J. W. J. Biol. Chem. 1996, 271, 681-687.
22. Whittaker, M. M.; Whittaker, J. W. J. Biol. Chem. 1988, 263, 6074-6080.
23. Bertini, I.; Canti, G.; Grassi, R.; Scozzafava, A. Inorg. Chem. 1980, 19, 2198-2200.
24. Bertini, I.; Scozzafava, A. Copper(II) as probe in substituted metalloproteins; In Metal ions in biological systems; Sigel, H., Ed.; Marcel Dekker, Inc.: New York and Basel, 1981; pp 31-74.
25. Bielski, B. H. J.; Cabelli, D. E.; Arudi, R. L.; Ross, A. B. J. Phys. Chem. Ref. Data 1985, 14, 1041-1100.
26. Bertini, I.; Mangani, S.; Viezzoli, M. S. Structure and properties of copper/zinc superoxide dismutases; In Advanced Inorganic Chemistry; Sykes, A. G., Ed.; Academic Press: San Diego, CA, 1998; pp 127-250.
27. Battistoni, A.; Rotilio, G. FEBS Lett. 1995, 374, 199-202.
28. Spagnolo, L.; Toro, I.; D'Orazio, M.; O'Neill, P.; Pedersen, J. Z.; Carugo, O.; Rotilio, G.; Battistoni, A.; Djinovic-Carugo, K. J. Biol. Chem. 2004, 279, 33447-33455.
29. Stroppolo, M. E.; Sette, M.; O'Neill, P.; Polizio, F.; Cambria, M. T.; Desideri, A. Biochemistry 1998, 37, 12287-12292.
30. Latif Abuhijleh, A.; Woods, C. Inorg. Chem. Commun. 2002, 5, 269-273.
31. Gonzalez-Alvarez, M.; Alzuet, G.; Borras, J.; del Castillo, A. L.; Garcia-Granda, S.; Montejo Bernardo, J. M. J. Inorg. Biochem. 2004, 98, 189-198.
32. Bertini, I.; Piccioli, M.; Viezzoli, M. S.; Chiu, C. Y.; Mullenbach, G. T. Eur. J. Biophys. 1994, 23, 167-176.
33. O'Neill, P.; Davies, S.; Fielden, E. M.; Calabrese, L.; Capo, C.; Marmocchi, F.; Natoli, G.; Rotilio, G. Biochem. J. 1988, 251, 41-46.
34. Banci, L.; Bertini, I.; Cabelli, D. E.; Hallewell, R. A.; Luchinat, C.; Viezzoli, M. S. Free Radical Res. Commun. 1991, 12-13, 239-251.
35. Fisher, C. L.; Cabelli, D. E.; Tainer, J. A.; Hallewell, R. A.; Getzoff, E. D. Proteins: Struct., Fund, Genet. 1994, 19, 24-34.
36. Tanaka, Y.; Tsumoto, K.; Nakanishi, T.; Yasutake, Y.; Sakai, N.; Yao, M.; Tanaka, I.; Kumagai, I. FEBS Lett. 2004, 556, 167-174.
37. Solovyov, A.; Gilbert, H. F. Protein Sci. 2004, 13, 1902-1907.
38. Blackburn, N. J.; Hasnain, S. S.; Binsted, N.; Diakun, G. P.; Garner, C. D.; Knowles, P. F. Biochem. J. 1984, 219, 985-990.
39. Hough, M. A.; Hasnain, S. S. J. Mol. Biol. 1999, 287, 579-592.
40. Stroppolo, M. E.; Nuzzo, S.; Pesce, A.; Rosano, C.; Battistoni, A.; Bolognesi, M.; Mobilio, S.; Desideri, A. Biochem. Biophys. Res. Commun. 1998, 249, 579-582.
41. Bourne, Y.; Redford, S. M.; Steinman, H. M.; Lepock, J. R.; Tamer, J. A.; Getzoff, E. D. Proc. Natl. Acad. Sci. U.S.A. 1996, 93, 12774-12779.
42. Getzoff, E. D.; Cabelli, D. E.; Fisher, C. L.; Parge, H. E.; Viezzoli, M. S.; Banci, L.; Hallewell, R. A. Nature 1992, 358, 347-351.
43. Banci, L.; Bertini, I.; Hallewell, R. A.; Luchinat, C.; Viezzoli, M. S. Eur. J. Biochem. 1989, 184, 125-129.
44. Bertini, I.; Banci, L.; Luchinat, C.; Bielski, B. H. J.; Cabelli, D.; Mullenbach, G. T.; Hallewell, R. A. J. Am. Chem. Soc. 1989, 111, 714-719.
45. Banci, L.; Bertini, I.; Cabelli, D.; Hallewell, R. A.; Luchinat, C.; Viezzoli, M. S. Inorg. Chem. 1990, 29, 2398-2403.
46. Banci, L.; Bertini, I.; Luchinat, C.; Hallewell, R. A. J. Am. Chem. Soc. 1988, 110, 3629-3633.
47. Bertini, I.; Banci, L.; Luchinat, C.; Hallewell, R. A. The exploration of the active-site cavity of copper-zinc superoxide dismutase. In Annals of the New York academy of sciences: Blanch, H. W., Klibanov, A. M., Eds.; New York Academy of Science Book: New York, 1988; pp 37-52.
48. Banci, L.; Bertini, I.; Viezzoli, M. S.; Argese, E.; Orsega, E.; Choi, Y. C.; Mullenbach, G. T. J. Biol. Inorg. Chem. 1997, 2, 295-301.
49. Klapper, I.; Hagstrom, R.; Fine, R.; Sharp, K.; Honig, B. Proteins: Struct., Funct., Genet. 1986, 1, 47-59.
50. Sharp, K.; Fine, R.; Honig, B. Science 1987, 236, 1460-1463.