Genetic structure of four socio-culturally diversified caste populations of southwest India and their affinity with related Indian and global groups

BMC Genetics

Volumn 5, Issue , 2004, Pages

  Rajkumar, Revathi ^a   Kashyap, V K ^a  

^a CENTRAL FORENSIC SCIENCE LABORATORY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA;

ARTICLE; CONSANGUINEOUS MARRIAGE; CONTROLLED STUDY; CULTURAL ANTHROPOLOGY; ETHNIC GROUP; EUROPE; GENE FLOW; GENE LOCATION; GENE LOCUS; GENETIC DISTANCE; GENETIC POLYMORPHISM; GENETIC VARIABILITY; GEOGRAPHY; HETEROZYGOTE DETECTION; HUMAN; INDIA; INDIAN; LINGUISTICS; MIDDLE EAST; MIGRATION; MOLECULAR PHYLOGENY; MOSLEM; POPULATION GENETIC STRUCTURE; POPULATION MIGRATION; POPULATION RESEARCH; REGIONALIZATION; REGRESSION ANALYSIS; STATISTICAL ANALYSIS;

EID: 25444466242     PISSN: 14712156     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-5-23     Document Type: Article

References (46)

1. Cann RL: Genetic clues to dispersal in human populations: Retracing past from the present. Science 2001, 291:1742-1748.
2. Majumder PP: People of India: Biological diversity and affinities. Evolutionary Anthropology 1998, 6:100-110.
3. Papiha SS: Genetic variation in India. Hum Biol 1996, 68:607-628.
4. Roychoudhury AK: Genetic relationships of the populations of eastern India. Ann Hum Biol 1992, 19:489-501.
5. Mastana SS, Papiha SS: Genetic variability of transferring subtypes in the populations of India. Hum Biol 1998, 70:729-44.
6. Mountain JL, Hebert JM, Bhattacharyya S, Underhill PA, Ottolenghi C, Gadgil M, Cavalli-Sforza LL: Demographic history of India and mt.DNA-sequence diversity. Am J Hum Genet 1995, 56:979-92.
7. Sundra A: The early chamber tombs of south India New Delhi: University Publishers; 1975.
8. Cavalli-Sforza LL, Menozzi P, Piazza A: The history and geography of human genes Princeton, NJ: Princeton University Press; 1994.
9. Gadgil M, Joshi NV, Shambu Prasad UV, Manmohan S, Suresh Patil: Peopling of India Edited by: Balasubramanian D, Rao D. The Indian Human Heritage Hyderabad: University Press; 1997.
10. Singh KS: India's communities national series people of India New Delhi: Oxford University Press; 1998.
11. Banerjee S, Roy M, Dey B, Mukherjee BN, Bhattacharjee SK: Genetic polymorphism of red cell antigen, enzyme, haemoglobin and serum protein in fifteen endogamous groups of south India. J Indian Anthropol Soc 1988, 23:250-262.
12. Walter H, Naide JM, Danker-Hopfe H, de Beck M, Harms M, Babu BV, Yasmin, Devi SS: Genetic serum protein markers in eight south Indian caste and tribal populations. Z Morphol Anthropol 1993, 79:355-65.
13. Mukherjee BN, Reddy AP, Malhotra KC, Vijaykumar M: Patterns of social and geographical distribution of transferrin subtype polymorphism in India. Hum Hered 1986, 36:113-118.
14. Vijayakumar M, Malhotra KC, Walter H, Gilbert K, Linderberg P, Dannewit A, Sorensen A, Chakraborty R, Reddy AP, Mukherjee BN: Genetic studies among the Siddis of Karnataka, India: a migrant population from Africa. Z Morphol Anthropol 1987, 77:97-121.
15. Dutta R, Kashyap VK: Genetic variation observed at 3 tetrameric STR loci HumTHO1, TPOX, and CSF1PO in 5 ethnic population groups of northeastern India. Am J Hum Biol 2001, 13:23-29.
16. Dutta R, Reddy BM, Chattopadhyay P, Kashyap VK, Sun G, Deka R: Patterns of Genetic Diversity at the 9 forensically approved STR loci in the Indian populations. Hum Biol 2001, 74:33-49.
17. Deka R, Shriver MD, Yu LM, Herdreich EM, Jin L, Zhong Y, McGarvey ST, Agarwal SS, Bunker CH, Miki T, Hundrieser J, Yin S, Raskin S, Barrantes R, Ferrell RE, Chakraborty R: Genetic variation at twenty-three microsatellite loci in sixteen human populations. Journal of genetics 1999, 78:99-121.
18. Chu JY, Huang W, Kuang SQ, Wang JM, Xu JJ, Chu ZT, Yang ZQ, Lin KQ, Li P, Wu M, Geng ZC, Tan CC, Du RF, Jin L: Genetic relationship of populations in China. Evolution 1998, 95:11763-11768.
19. Reddy MB, Sun G, Luis JR, Crawford MH, Heman NS, Deka R: Genomic diversity at 13 STR loci in a substructured caste population, Golla, of southern Andhra Pradesh, India. Human Biology 2001, 73:175-190.
20. Mukherjee N, Majumder PP, Roy B, Roy M, Chakraborty M, Banerjee S: Variation in 4 short tandem repeat loci in 8 population groups of India. Hum Biol 1999, 71:439-446.
21. Destro-Bisol G, Boschi I, Caglia A, Tofanelli S, Pascali V, Paoli G, Spedini G: Microsatellite variation in central Africa: An analysis of Intrapopulation and interpopulation genetic diversity. Am J Phys Anthropol 2000, 112:319-337.
22. Dib C, Faure S, Fizames C, Samson D, Drouot N, Vignal A, Millasseaur P, Marc S, Hazan J, Seboun E, Lathrop M, Gyapay G, Morissette J, Meissenbach J: A comprehensive genetic map of the human genome based on 5,624 microsatellites. Nature 1996, 380:152-154.
23. Zhivotorsky LA, Feldman MW, Grishechkin SA: Biased mutation and microsatellite variation. Mol Biol Evol 1997, 14:926-933.
24. Kimmel M, Chakraborty R, King JP, Bamshad M, Watkins WS, Jorde LB: Signatures of population expansion in microsatellite repeat data. Genetics 1998, 148:1921-1930.
25. Majumder PP: Genes, diversities and peoples of India. In Ethical challenges as we approach the end of the human genome project Edited by: Macer DRJ. Eubios Ethics Institute; 1998:20-33.
26. Sitalaxmi T, Trivedi R, Kashyap VK: Genotype profile for thirteen tetranucleotide repeat loci and two pentanucleotide repeat loci in four endogamous Tamil population groups of India. J Forensic Sci, USA 2002, 47:1168-1173.
27. Sitalaxmi T, Trivedi R, Kashyap VK: Autosomal microsatellite profile of 3 socially diverse ethnic Tamil populations of India. J Forensic Sci, USA 2003, 47:211-214.
28. Sahoo S, Kashyap VK: Allele frequencies of data for Powerplex 16 loci in four major populations of Orissa, India. J Forensic Sci, USA 2002, 47:912-915.
29. Ashma R, Kashyap VK: Genetic study of 15 important STR loci among four major ethnic groups of Bihar, India. J Forensic Sci, USA 2002, 47:1139-1142.
30. Levedakou EN, Freeman DA, Budzynski MJ, Early BE, McElfresh KC, Schumm JW, Amin AS, Kim YK, Sprecher CJ, Krenke BE, Silva DA, McIntosh TM, Grubb JC, Johnston LJ, Sailus JS, Ban JD, Crouse CA, Nelson MS: Allele Frequencies for fourteen STR Loci of the PowerPlex™ 1.1 and 2.1 Multiplex Systems and Penta D Locus In Caucasians, African-Americans, Hispanics, and Other Populations of the United States of America and Brazil. J Forensic Sci, USA 2001, 46:423-767.
31. Law MY, To KY, Ho SH, Pang BCM, Wong LM, Wun SK, Chan KL: STR data for the PowerPlex™ 16 loci for the Chinese population in Hong Kong. Forensic Sci Int 2002, 129:64-67.
32. Calafell F, Shuster A, Speed WC, Kidd KK: Short tandem repeat polymorhism evolution in humans. Eur J Hum Genet 1998, 6:38-49.
33. Bosch E, Calafell F, Perez-Lezaun A, Clarimon J, Comas D, Mateu E, Martinez-Arias R, Morera B, Brakez Z, Akhayat O, Sefiani A, Hariti G, Cambon-Thomsen A, Bertranpetit J: Genetic structure of northwest Africa revealed by STR analysis. Eur J Hum Genet 2000, 8:360-366.
34. Rosenberg NA, Pritchard JK, Weber JL, Cann HM, Kidd KK, Zhivotovsky LA, Feldman MW: Structure of human populations. Science 2002, 298:2381-2385.
35. Rajkumar R, Kashyap VK: Distribution of alleles of fifteen STR loci of the Powerplex 16 multipex in four predominant population groups of south India. Forensic Sci Int 2002, 126:175-179.
36. Mastana SS, Reddy PH, Das MK, Das K: Molecular genetic diversity in 5 populations of Madhya Pradesh, India. Human Biol 2000, 72:499-510.
37. Pandey BN, Das PKL, Pankaj PK, Vasulu TS: Genetic diversity and population structure among 13 endogamous populations of Purnis, Bihar. The mankind Quaterly 2000, 40:355-380.
38. Bittles AH, Coble JM, Rao NA: Trends in consanguineaous marriage in Karnataka, south India, 1980-89. J Biosoc Sci 1993, 25:111-6.
39. Bamshad M, Kivisild T, Watkins WS, Dixon ME, Ricker CE, Rao BB, Naidu JM, Prasad ME, Reddy PG, Rasanayagam A, Papiha SS, Villems R, Reddy AJ, Hammer MF, Nguyen SV, Carroll ML, Batzer MA, Jorde LB: Genetic evidence on the origins of Indian caste populations. Genome Research 2001, 11:994-1004.
40. Sambrook J, Fritsch EF, Maniatis T: Molecular cloning: A laboratory manual Edited by: Ford N, Nolan C, Ferguson MC. Cold Spring Harbor: Cold Spring Harbor Laboratory Press; 1989.
41. Li CC: First course in population genetics C A: Boxwood; 1976.
42. Nei M, Tajima F, Tateno Y: Accuracy of estimated phylogenetic trees from molecular data. J Mol Evol 1983, 19:153-170.
43. Takazaki N, Nei M: Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA. Genetics 1996, 144:389-399.
44. Saitou N, Nei M: The neighbor-joining method: A new method for reconstrusting phylogenetic trees. Mol Biol Evol 1987, 4:406-425.
45. Schneider S, Roessli D, Excoffier L: Arlequin ver 2.000: A software for population genetic analysis. Genetics and Biometry Laboratory, University of Geneva, Switzerland 2000.
46. Harpending HC, Ward R: Chemical systematics and human evolution. In Biochemical aspects of evolutionary biology Edited by: Nitecki M. IL: University of Chicago Press; 1982:213-256.