Mitochondrial phylogeography of the moor frog, Rana arvalis

Molecular Ecology

Volumn 13, Issue 6, 2004, Pages 1469-1480

  Babik, W ^a   Branicki, W ^b   Sandera, M ^c   Litvinchuk, S ^d   Borkin, L J ^a,e   Irwin, J T ^f   Rafinski J ^a  

^a JAGIELLONIAN UNIVERSITY   (Poland)

^b INSTITUTE OF FORENSIC RESEARCH   (Poland)

^c Museum of Nature 'Bohemian Paradise'   (Czech Republic)

^d INSTITUTE OF CYTOLOGY   (Russian Federation)

^e ZOOLOGICAL INSTITUTE   (Russian Federation)

^f BUCKNELL UNIVERSITY   (United States)

Author keywords

Carpathian basin; Eastern refugia; Mitochondrial DNA; Nested clade analysis; Phylogeography; Rana arvalis

Indexed keywords

MITOCHONDRIAL DNA; PRIMER DNA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CLUSTER ANALYSIS; COMPARATIVE STUDY; DNA SEQUENCE; ENVIRONMENT; EUROPE; FROG; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; HAPLOTYPE; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PHYSIOLOGY; POPULATION DYNAMICS; STATISTICAL MODEL; TIME;

ANIMALS; BASE SEQUENCE; CLUSTER ANALYSIS; DNA PRIMERS; DNA, MITOCHONDRIAL; ENVIRONMENT; EUROPE; EVOLUTION, MOLECULAR; GEOGRAPHY; HAPLOTYPES; LIKELIHOOD FUNCTIONS; MODELS, GENETIC; MOLECULAR SEQUENCE DATA; PHYLOGENY; POPULATION DYNAMICS; RANIDAE; SEQUENCE ANALYSIS, DNA; TIME FACTORS; VARIATION (GENETICS);

AMPHIBIA; ANIMALIA; ANURA; RANA ARVALIS; REPTILIA; VERTEBRATA;

EID: 2542620005     PISSN: 09621083     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2004.02157.x     Document Type: Article

References (54)

1. Andersen BG, Borns HW Jr (1997) The Ice Age World. Scandinavian University Press, Oslo.
2. Babik W, Rafiński J (2000) Morphometric differentiation of the moor frog (Rana arvalis Nilss.) in Central Europe. Journal of Zoological Systematics and Evolutionary Research, 38, 239-247.
3. Beerli P, Hotz H, Uzzell T (1996) Geologically dated sea barriers calibrate a protein clock for aegean water frogs. Evolution, 50, 1676-1687.
4. Bilton DT, Mirol PM, Mascheretti S et al. (1998) Mediterranean Europe as an area of endemism for small mammals rather than a source for northwards postglacial colonization. Proceedings of the Royal Society of London, Series B, 265, 1219-1226.
5. Borkin LJ, Belimov GT, Sedalishchev VT (1984) New data on distribution of amphibians and reptiles in Yakutia. Proceedings of the Zoological Institute, USSR Academy of Sciences, Leningrad, 124, 89-101 [in Russian, with English summary].
6. Bos DH, Sites JW (2001) Phylogeography and conservation genetics of the Columbia spotted frog (Rana luteiventris; Amphibia, Ranidae). Molecular Ecology, 10, 1499-1513.
7. Brunhoff C, Galbreath KE, Fedorov VB, Cook JA, Jaarola M (2003) Holarctic phylogeography of the root vole (Microtus oeconomus): implications for late Quaternary biogeography of high latitudes. Molecular Ecology, 12, 957-968.
8. Carlsson M (2003) Phylogeography of the adder, Vipera berus. PhD Thesis, Uppsala University, Uppsala, Sweden.
9. Clement M, Posada D, Crandall KA (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9, 1657-1659.
10. Comes HP, Kadereit JW (1998) The effect of Quaternary climatic changes on plant distribution and evolution. Trends in Plant Sciences, 3, 432-438.
11. Crandall KA (1996) Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. Molecular Biology and Evolution, 13, 115-131.
12. Efimik VE (1996) Pliocene and Pleistocene relict species in spider fauna of the South Urals. Zoologichesky Zhurnal, 75, 1138-1148 [in Russian, with English summary].
13. Felsenstein J (1988) Phylogenies from molecular sequences - inference and reliability. Annual Review of Genetics, 22, 521-565.
14. García-París M, Alcobendas M, Buckley D, Wake DB (2003) Dispersal of viviparity across contact zones in Iberian populations of fire salamanders (Salamandra) inferred from discordance of genetic and morphological traits. Evolution, 57, 129-143.
15. Haase M, Misof B, Wirth T, Baminger H, Baur B (2003) Mitochondrial differentiation in a polymorphic land snail: evidence for Pleistocene survival within the boundaries of permafrost. Journal of Evolutionary Biology, 16, 415-428.
16. Hewitt GM (1999) Post-glacial re-colonization of European biota. Biological Journal of the Linnean Society, 68, 87-112.
17. Hewitt GM (2000) The genetic legacy of the Quaternary ice ages. Nature, 405, 907-913.
18. Ishchenko VG (1989) Population biology of amphibians. Soviet Scientific Reviews, Series F, Physiology: General Biology, 3, 119-155.
19. Ishchenko V (1997) Rana arvalis Nilsson, 1842. In: Atlas of Amphibians and Reptiles in Europe (ed. Gasc J-P). Muséum National d'Histoire Naturelle, Paris.
20. Jaarola M, Searle JB (2002) Phylogeography of field voles (Microtus agrestis) in Eurasia inferred from mitochondrial DNA sequences. Molecular Ecology, 11, 2613-2621.
21. King RA, Ferris C (1998) Chloroplast DNA phylogeography of Alnus glutinosa (L.) Gaertn. Molecular Ecology, 7, 1151-1161.
22. Kropf M, Kadereit JW, Comes HP (2003) Differential cycles of range contraction and expansion in European high mountain plants during the Late Quaternary: insights from Pritzelago alpina (L.) O. Kuntze (Brassicaceae). Molecular Ecology, 12, 931-949.
23. Kuhner MK, Yamato J, Felsenstein J (1998) Maximum likelihood estimation of population growth rates based on the coalescent. Genetics, 149, 429-434.
24. Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics, 17, 1244-1245.
25. Kuzmin SL (1999) The Amphibians of the Former Soviet Union. Pensoft, Moscow.
26. Lagercrantz U, Ryman N (1990) Genetic structure of Norway spruce (Picea abies): concordance of morphological and allozymic variation. Evolution, 44, 38-53.
27. Markova AK, Simakova AN, Pusachenko AY (2002) Ecosystems of Eastern Europe at the epoch of maximum cooling of the Valday glaciation (24-18 thousand years ago) based on floristic and theriological data. Doklady, Russian Academy of Sciences, Moscow, 386, 681-685 [in Russian].
28. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
29. Petit RJ, Aguinagalde I, de Beaulieu JL et al. (2003) Glacial refugia: hotspots but not melting pots of genetic diversity. Science, 300, 1563-1565.
30. Polyakov AV, Zima J, Searle JB, Borodin PM, Ladygina T (2000) Chromosome races of the common shrew Sorex araneus in the Ural Mts: a link between Siberia and Scandinavia? Acta Theriologica, 45 (Suppl. 1), 19-26.
31. Posada D, Crandall KA (1998) MODELTEST: testing the model of DNA substitution. Bioinformatics, 14, 817-818.
32. Posada D, Crandall KA, Templeton AR (2000) GEODIS: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Molecular Ecology, 9, 487-488.
33. Printzen C, Ekman S, Tonsberg T (2003) Phylogeography of Cavernularia hultenii: evidence of slow genetic drift in a widely disjunct lichen. Molecular Ecology, 12, 1473-1486.
34. Rafiński J, Babik W (2000) Genetic differentiation among northern and southern populations of the moor frog Rana arvalis Nilsson in central Europe. Heredity, 84, 610-618.
35. Rozas J, Rozas R (1999) DNASP, version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioiformatics, 15, 174-175.
36. Schmitt T, Seitz A (2001) Intraspecific allozymatic differentiation reveals the glacial refugia and the postglacial expansions of European Erebia medusa (Lepidoptera: Nymphalidae). Biological Journal of the Linnean Society, 74, 429-458.
37. Soffer O (1990) The Russian Plains at the Last Glacial Maximum. In: The World at 18 000 BP 1. High Latitudes (eds Soffer O, Gamble C). Unwin-Hyman, London.
38. Stewart JR, Lister AM (2001) Cryptic northern refugia and the origins of the modern biota. Trends in Ecology and Evolution, 16, 608-613.
39. Stugren B (1966) Geographic variation and distribution of the moor frog, Rana arvalis Nilss. Annales Zoologici Fennici, 3, 29-39.
40. Sümegi P, Krolopp E (2002) Quatermalacological analyses for modelling of the Upper Weichselian palaeoenvironmental changes in the Carpathian Basin. Quaternary International, 91, 53-63.
41. Sumida M, Kanamori Y, Kaneda H et al. (2001) Complete nucleotide sequence and gene rearrangement of the mitochondrial genome of the Japanese pond frog Rana nigromaculata. Genes and Genetic Systems, 76, 311-325.
42. Surget-Groba Y, Heulin B, Guilamme C-P et al. (2001) Intraspecific phylogeography of Lacerta vivipara and the evolution of viviparity. Molecular Phylogenetics and Evolution, 18, 449-459.
43. Swofford DL (2002) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods), Version 4. Sinauer Associates, Sunderland.
44. Taberlet P, Bouvet J (1994) Mitochondrial DNA polymorphism, phylogeography, and conservation genetics of the brown bear Ursus arctos in Europe. Proceedings of the Royal Society of London, Series B, 255, 195-200.
45. Taberlet P, Fumagalli L, Wust-Saucy AG, Cosson JF (1998) Comparative phylogeography and postglacial colonization routes in Europe. Molecular Ecology, 7, 453-464.
46. Tanaka-Ueno T, Matsui M, Sato T, Takenaka S, Takenaka O (1998) Local population differentiation and phylogenetic relationships of Russian brown frog, Rana amurensis inferred by mitochondrial cytochrome b gene sequences (Amphibia, Ranidae). Japanese Journal of Herpetology, 17, 91-97.
47. Tarasov PE, Volkova VS, Webb T III et al. (2000) Last glacial maximum biomes reconstructed from pollen and plant macrofossil data from northern Eurasia. Journal of Biogeography, 27, 609-620.
48. Templeton AR (1998) Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Molecular Ecology, 7, 381-397.
49. Templeton AR, Crandall KA, Sing CF (1992) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics, 132, 619-633.
50. Templeton AR, Sing CF (1993) A cladistic analysis of phenotypic association with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics, 134, 659-669.
51. Veith M, Kosuch J, Vences M (2003) Climatic oscillations triggered post-Messinian speciation of Western Palearctic brown frogs (Amphibia, Ranidae). Molecular Phylogenetics and Evolution, 26, 310-327.
52. Venczel M (1997) Amphibians and reptiles from the lower Pleistocene of Osztramos (Hungary). Nymphaea, 23-25, 77-88.
53. Willis KJ, Rudner E, Sümegi P (2000) The full-glacial forests of central and southeastern Europe. Quaternary Research, 53, 203-213.
54. Yakovlev VA (1980) On vertical distribution and breeding of the moor frog in the Altai Nature Reserve. Ecologiya, Sverdlovsk, 4, 89-90 [in Russian].