메뉴 건너뛰기




Volumn 84, Issue 2, 2004, Pages 331-345

Characterization of the type I interferon locus and identification of novel genes

Author keywords

Embryonic development; Genomic locus; Human chromosome 9; Interferon type I; Mouse chromosome 4

Indexed keywords

INTERFERON;

EID: 2542420686     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ygeno.2004.03.003     Document Type: Article
Times cited : (197)

References (53)
  • 2
    • 0025889076 scopus 로고
    • Human interferon omega (omega) binds to the alpha/beta receptor
    • Flores I., Mariano T.M., Pestka S. Human interferon omega (omega) binds to the alpha/beta receptor. J. Biol. Chem. 266:1991;19875-19877
    • (1991) J. Biol. Chem. , vol.266 , pp. 19875-19877
    • Flores, I.1    Mariano, T.M.2    Pestka, S.3
  • 4
    • 0035955680 scopus 로고    scopus 로고
    • Interferon-kappa, a novel type I interferon expressed in human keratinocytes
    • LaFleur D.W., Nardelli B., Tsareva T., Mather D., Feng P., et al. Interferon-kappa, a novel type I interferon expressed in human keratinocytes. J. Biol. Chem. 276:2001;39765-39771
    • (2001) J. Biol. Chem. , vol.276 , pp. 39765-39771
    • Lafleur, D.W.1    Nardelli, B.2    Tsareva, T.3    Mather, D.4    Feng, P.5
  • 6
    • 0034089107 scopus 로고    scopus 로고
    • Limitin: An interferon-like cytokine that preferentially influences B-lymphocyte precursors
    • Oritani K., Medina K.L., Tomiyama Y., Ishikawa J., Okajima Y., et al. Limitin: an interferon-like cytokine that preferentially influences B-lymphocyte precursors. Nat. Med. 6:2000;659-666
    • (2000) Nat. Med. , vol.6 , pp. 659-666
    • Oritani, K.1    Medina, K.L.2    Tomiyama, Y.3    Ishikawa, J.4    Okajima, Y.5
  • 8
  • 11
    • 0009826559 scopus 로고
    • Chromosomal localization of human leukocyte, fibroblast, and immune interferon genes by means of in situ hybridization
    • Trent J.M., Olson S., Lawn R.M. Chromosomal localization of human leukocyte, fibroblast, and immune interferon genes by means of in situ hybridization. Proc. Natl. Acad. Sci. USA. 79:1982;7809-7813
    • (1982) Proc. Natl. Acad. Sci. USA , vol.79 , pp. 7809-7813
    • Trent, J.M.1    Olson, S.2    Lawn, R.M.3
  • 12
    • 0027980347 scopus 로고
    • Structure of the human type-I interferon gene cluster determined from a YAC clone contig
    • Diaz M.O., Pomykala H.M., Bohlander S.K., Maltepe E., Malik K., et al. Structure of the human type-I interferon gene cluster determined from a YAC clone contig. Genomics. 22:1994;540-552
    • (1994) Genomics , vol.22 , pp. 540-552
    • Diaz, M.O.1    Pomykala, H.M.2    Bohlander, S.K.3    Maltepe, E.4    Malik, K.5
  • 14
    • 0022035927 scopus 로고
    • Mouse interferon alpha and beta genes are linked at the centromere proximal region of chromosome 4
    • Van der Korput J.A., Hilkens J., Kroezen V., Zwarthoff E.C., Trapman J. Mouse interferon alpha and beta genes are linked at the centromere proximal region of chromosome 4. J. Gen. Virol. 66:1985;493-502
    • (1985) J. Gen. Virol. , vol.66 , pp. 493-502
    • Van Der Korput, J.A.1    Hilkens, J.2    Kroezen, V.3    Zwarthoff, E.C.4    Trapman, J.5
  • 15
    • 0021934542 scopus 로고
    • Subchromosomal localization of mouse IFN-alpha genes by in situ hybridization
    • Cahilly L.A., George D., Daugherty B.L., Pestka S. Subchromosomal localization of mouse IFN-alpha genes by in situ hybridization. J. Interferon Res. 5:1985;391-395
    • (1985) J. Interferon Res. , vol.5 , pp. 391-395
    • Cahilly, L.A.1    George, D.2    Daugherty, B.L.3    Pestka, S.4
  • 16
    • 0022423139 scopus 로고
    • Characterization of a mouse interferon gene locus. I. Isolation of a cluster of four alpha interferon genes
    • Kelley K.A., Pitha P.M. Characterization of a mouse interferon gene locus. I. Isolation of a cluster of four alpha interferon genes. Nucleic Acids Res. 13:1985;805-823
    • (1985) Nucleic Acids Res. , vol.13 , pp. 805-823
    • Kelley, K.A.1    Pitha, P.M.2
  • 17
    • 0021986706 scopus 로고
    • Structure of a murine alpha interferon pseudogene with a repetitive R-type sequence in the 3′ flanking region
    • Le Roscouet D., Vodjdani G., Lemaigre-Dubreuil Y., Tovey M.G., Latta M., et al. Structure of a murine alpha interferon pseudogene with a repetitive R-type sequence in the 3′ flanking region. Mol. Cell. Biol. 5:1985;1343-1348
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 1343-1348
    • Le Roscouet, D.1    Vodjdani, G.2    Lemaigre-Dubreuil, Y.3    Tovey, M.G.4    Latta, M.5
  • 18
    • 0025938421 scopus 로고
    • Isolation and characterization of a novel interferon-alpha-encoding gene, IFN-alpha 11, within a murine IFN cluster
    • Coulombel C., Vodjdani G., Doly J. Isolation and characterization of a novel interferon-alpha-encoding gene, IFN-alpha 11, within a murine IFN cluster. Gene. 104:1991;187-195
    • (1991) Gene , vol.104 , pp. 187-195
    • Coulombel, C.1    Vodjdani, G.2    Doly, J.3
  • 19
    • 0022423166 scopus 로고
    • Organization, structure and expression of murine interferon alpha genes
    • Zwarthoff E.C., Mooren A.T., Trapman J. Organization, structure and expression of murine interferon alpha genes. Nucleic Acids Res. 13:1985;791-804
    • (1985) Nucleic Acids Res. , vol.13 , pp. 791-804
    • Zwarthoff, E.C.1    Mooren, A.T.2    Trapman, J.3
  • 20
    • 0028231273 scopus 로고
    • Drosophila kelch motif is derived from a common enzyme fold
    • Bork P., Doolittle R.F. Drosophila kelch motif is derived from a common enzyme fold. J. Mol. Biol. 236:1994;1277-1282
    • (1994) J. Mol. Biol. , vol.236 , pp. 1277-1282
    • Bork, P.1    Doolittle, R.F.2
  • 21
    • 0033961690 scopus 로고    scopus 로고
    • The kelch repeat superfamily of proteins: Propellers of cell function
    • Adams J., Kelso R., Cooley L. The kelch repeat superfamily of proteins: propellers of cell function. Trends Cell. Biol. 10:2000;17-24
    • (2000) Trends Cell. Biol. , vol.10 , pp. 17-24
    • Adams, J.1    Kelso, R.2    Cooley, L.3
  • 22
    • 0022545165 scopus 로고
    • Structure and expression of a new murine interferon-alpha gene: MuIFN-alpha I9
    • Seif I., De Maeyer-Guignard J. Structure and expression of a new murine interferon-alpha gene: MuIFN-alpha I9. Gene. 43:1986;111-121
    • (1986) Gene , vol.43 , pp. 111-121
    • Seif, I.1    De Maeyer-Guignard, J.2
  • 23
    • 0034616398 scopus 로고    scopus 로고
    • Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    • Loots G.G., Locksley R.M., Blankespoor C.M., Wang Z.E., Miller W., et al. Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons. Science. 288:2000;136-140
    • (2000) Science , vol.288 , pp. 136-140
    • Loots, G.G.1    Locksley, R.M.2    Blankespoor, C.M.3    Wang, Z.E.4    Miller, W.5
  • 24
    • 0037270315 scopus 로고    scopus 로고
    • AVID: A global alignment program
    • Bray N., Dubchak I., Pachter L. AVID: a global alignment program. Genome Res. 13:2003;97-102
    • (2003) Genome Res. , vol.13 , pp. 97-102
    • Bray, N.1    Dubchak, I.2    Pachter, L.3
  • 25
    • 0034518158 scopus 로고    scopus 로고
    • VISTA: Visualizing global DNA sequence alignments of arbitrary length
    • Mayor C., Brudno M., Schwartz J.R., Poliakov A., Rubin E.M., et al. VISTA: visualizing global DNA sequence alignments of arbitrary length. Bioinformatics. 16:2000;1046-1047
    • (2000) Bioinformatics , vol.16 , pp. 1046-1047
    • Mayor, C.1    Brudno, M.2    Schwartz, J.R.3    Poliakov, A.4    Rubin, E.M.5
  • 26
    • 0028913109 scopus 로고
    • A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain
    • Horvath C.M., Wen Z., Darnell J.E.J. A STAT protein domain that determines DNA sequence recognition suggests a novel DNA-binding domain. Genes Dev. 9:1995;984-994
    • (1995) Genes Dev. , vol.9 , pp. 984-994
    • Horvath, C.M.1    Wen, Z.2    Darnell, J.E.J.3
  • 27
    • 0033342984 scopus 로고    scopus 로고
    • Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: Evidence for differential steroid receptor response elements
    • Nelson C.C., Hendy S.C., Shukin R.J., Cheng H., Bruchovsky N., et al. Determinants of DNA sequence specificity of the androgen, progesterone, and glucocorticoid receptors: evidence for differential steroid receptor response elements. Mol. Endocrinol. 13:1999;2090-2107
    • (1999) Mol. Endocrinol. , vol.13 , pp. 2090-2107
    • Nelson, C.C.1    Hendy, S.C.2    Shukin, R.J.3    Cheng, H.4    Bruchovsky, N.5
  • 29
    • 0028944489 scopus 로고
    • Alpha and beta interferons and their receptor and their friends and relations
    • Uze G., Lutfalla G., Mogensen K.E. Alpha and beta interferons and their receptor and their friends and relations. J. Interferon Cytokine Res. 15:1995;3-26
    • (1995) J. Interferon Cytokine Res. , vol.15 , pp. 3-26
    • Uze, G.1    Lutfalla, G.2    Mogensen, K.E.3
  • 31
    • 0030589627 scopus 로고    scopus 로고
    • Zinc mediated dimer of human interferon-alpha 2b revealed by X-ray crystallography
    • Radhakrishnan R., Walter L.J., Hruza A., Reichert P., Trotta P.P., et al. Zinc mediated dimer of human interferon-alpha 2b revealed by X-ray crystallography. Structure. 4:1996;1453-1463
    • (1996) Structure , vol.4 , pp. 1453-1463
    • Radhakrishnan, R.1    Walter, L.J.2    Hruza, A.3    Reichert, P.4    Trotta, P.P.5
  • 32
    • 0026673074 scopus 로고
    • Three-dimensional crystal structure of recombinant murine interferon-beta
    • Senda T., Shimazu T., Matsuda S., Kawano G., Shimizu H., et al. Three-dimensional crystal structure of recombinant murine interferon-beta. EMBO J. 11:1992;3193-3201
    • (1992) EMBO J. , vol.11 , pp. 3193-3201
    • Senda, T.1    Shimazu, T.2    Matsuda, S.3    Kawano, G.4    Shimizu, H.5
  • 34
    • 0034575122 scopus 로고    scopus 로고
    • The human major histocompatibility complex: Lessons from the DNA sequence
    • Beck S., Trowsdale J. The human major histocompatibility complex: lessons from the DNA sequence. Annu. Rev. Genom. Hum. Genet. 1:2000;117-137
    • (2000) Annu. Rev. Genom. Hum. Genet. , vol.1 , pp. 117-137
    • Beck, S.1    Trowsdale, J.2
  • 36
    • 0037323925 scopus 로고    scopus 로고
    • Characterization and transcriptional analysis of the mouse chromosome 16 cytokine receptor gene cluster
    • Hardy M.P., Sanij E., Hertzog P.J., Owczarek C.M. Characterization and transcriptional analysis of the mouse chromosome 16 cytokine receptor gene cluster. Mamm. Genome. 14:2003;105-118
    • (2003) Mamm. Genome , vol.14 , pp. 105-118
    • Hardy, M.P.1    Sanij, E.2    Hertzog, P.J.3    Owczarek, C.M.4
  • 37
    • 0021957604 scopus 로고
    • Two distinct families of human and bovine interferon-alpha genes are coordinately expressed and encode functional polypeptides
    • Capon D.J., Shepard H.M., Goeddel D.V. Two distinct families of human and bovine interferon-alpha genes are coordinately expressed and encode functional polypeptides. Mol. Cell. Biol. 5:1985;768-779
    • (1985) Mol. Cell. Biol. , vol.5 , pp. 768-779
    • Capon, D.J.1    Shepard, H.M.2    Goeddel, D.V.3
  • 38
    • 0028828986 scopus 로고
    • The evolution of the type I interferon gene family in mammals
    • Hughes A.L. The evolution of the type I interferon gene family in mammals. J. Mol. Evol. 41:1995;539-548
    • (1995) J. Mol. Evol. , vol.41 , pp. 539-548
    • Hughes, A.L.1
  • 39
    • 0028051363 scopus 로고
    • Role of interferons in the regulation of cell proliferation, differentiation, and development
    • Hertzog P.J., Hwang S.Y., Kola I. Role of interferons in the regulation of cell proliferation, differentiation, and development. Mol. Reprod. Dev. 39:1994;226-232
    • (1994) Mol. Reprod. Dev. , vol.39 , pp. 226-232
    • Hertzog, P.J.1    Hwang, S.Y.2    Kola, I.3
  • 40
    • 0036618161 scopus 로고    scopus 로고
    • Progesterone and the control of uterine cell proliferation and differentiation
    • Rider V. Progesterone and the control of uterine cell proliferation and differentiation. Front. Biosci. 7:2002;1545-1555
    • (2002) Front. Biosci. , vol.7 , pp. 1545-1555
    • Rider, V.1
  • 41
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:1994;4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 43
    • 0002367729 scopus 로고    scopus 로고
    • MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
    • Tokyo, Japan: The Institute of Statistical Mathematics
    • Adachi J., Hasegawa M. MOLPHY version 2.3: programs for molecular phylogenetics based on maximum likelihood. Computer Science Monogr. 28. 1996;The Institute of Statistical Mathematics, Tokyo, Japan
    • (1996) Computer Science Monogr. 28
    • Adachi, J.1    Hasegawa, M.2
  • 44
    • 0026691182 scopus 로고
    • The rapid generation of mutation data matrices from protein sequences
    • Jones D.T., Taylor W.R., Thornton J.M. The rapid generation of mutation data matrices from protein sequences. Comput. Appl. Biosci. 8:1992;275-282
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 275-282
    • Jones, D.T.1    Taylor, W.R.2    Thornton, J.M.3
  • 45
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea
    • Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea. J. Mol. Evol. 29:1989;170-179
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 46
    • 0034123820 scopus 로고    scopus 로고
    • TrExML: A maximum likelihood approach for extensive tree-space exploration
    • Wolf M.J., Easteal S., Kahn M., McKay B.D., Jermiin L.S. TrExML: a maximum likelihood approach for extensive tree-space exploration. Bioinformatics. 16:2000;383-394
    • (2000) Bioinformatics , vol.16 , pp. 383-394
    • Wolf, M.J.1    Easteal, S.2    Kahn, M.3    McKay, B.D.4    Jermiin, L.S.5
  • 47
    • 0030732143 scopus 로고    scopus 로고
    • Majority-rule consensus of phylogenetic trees obtained by maximum-likelihood analysis
    • Jermiin L.S., Olsen G.J., Mengersen K.L., Easteal S. Majority-rule consensus of phylogenetic trees obtained by maximum-likelihood analysis. Mol. Biol. Evol. 14:1997;1296-1302
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1296-1302
    • Jermiin, L.S.1    Olsen, G.J.2    Mengersen, K.L.3    Easteal, S.4
  • 48
    • 0028971143 scopus 로고
    • MatInd and MatInspector - New fast and versatile tools for detection of consensus matches in nucleotide sequence data
    • Quandt K., Frech K., Karas H., Wingender E., Werner T. MatInd and MatInspector - new fast and versatile tools for detection of consensus matches in nucleotide sequence data. Nucleic Acids Res. 23:1995;4878-4884
    • (1995) Nucleic Acids Res. , vol.23 , pp. 4878-4884
    • Quandt, K.1    Frech, K.2    Karas, H.3    Wingender, E.4    Werner, T.5
  • 51
    • 0033799618 scopus 로고    scopus 로고
    • Active conservation of noncoding sequences revealed by 3-way species comparisons
    • Dubchak I., Brudno M., Loots G.G., Mayor C., Pachter L., et al. Active conservation of noncoding sequences revealed by 3-way species comparisons. Genome Res. 10:2000;1304-1306
    • (2000) Genome Res. , vol.10 , pp. 1304-1306
    • Dubchak, I.1    Brudno, M.2    Loots, G.G.3    Mayor, C.4    Pachter, L.5
  • 52
    • 0035863894 scopus 로고    scopus 로고
    • The soluble murine type I interferon receptor Ifnar-2 is present in serum, is independently regulated, and has both agonistic and antagonistic properties
    • Hardy M.P., Owczarek C.M., Trajanovska S., Liu X., Kola I., et al. The soluble murine type I interferon receptor Ifnar-2 is present in serum, is independently regulated, and has both agonistic and antagonistic properties. Blood. 97:2001;473-482
    • (2001) Blood , vol.97 , pp. 473-482
    • Hardy, M.P.1    Owczarek, C.M.2    Trajanovska, S.3    Liu, X.4    Kola, I.5
  • 53
    • 0020315787 scopus 로고
    • Transcripts from the cellular homologues of retroviral oncogenes: Distribution among chicken tissues
    • Gonda T.J., Sheiness D.K., Bishop J.M. Transcripts from the cellular homologues of retroviral oncogenes: distribution among chicken tissues. Mol. Cell. Biol. 2:1982;617-624
    • (1982) Mol. Cell. Biol. , vol.2 , pp. 617-624
    • Gonda, T.J.1    Sheiness, D.K.2    Bishop, J.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.