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Volumn 16, Issue 4, 2000, Pages 383-394

TrExML: A maximum-likelihood approach for extensive tree-space exploration

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER PROGRAM; INTERNET; MOLECULAR EVOLUTION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL;

EID: 0034123820     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/16.4.383     Document Type: Article
Times cited : (30)

References (23)
  • 2
    • 0002367729 scopus 로고    scopus 로고
    • MOLPHY version 2.3: Programs for molecular phylogenetics based on maximum likelihood
    • The Institute of Statistical Mathematics, Tokyo
    • Adachi, J. and Hasegawa, M. (1996) MOLPHY Version 2.3: Programs for molecular phylogenetics based on maximum likelihood. Computer Science Monographs vol. 28, The Institute of Statistical Mathematics, Tokyo.
    • (1996) Computer Science Monographs , vol.28
    • Adachi, J.1    Hasegawa, M.2
  • 3
    • 0028963294 scopus 로고
    • The relationship between parsimony and maximum likelihood analyses: Tree scores and confidence estimates for three real data sets
    • DeBry, R.W. and Abele, L.G. (1995) The relationship between parsimony and maximum likelihood analyses: tree scores and confidence estimates for three real data sets. Mol. Biol. Evol., 12, 291-297.
    • (1995) Mol. Biol. Evol. , vol.12 , pp. 291-297
    • DeBry, R.W.1    Abele, L.G.2
  • 4
    • 84959792503 scopus 로고
    • The number of evolutionary trees
    • Felsenstein, J. (1978) The number of evolutionary trees. Syst. Zool., 27, 27-33.
    • (1978) Syst. Zool. , vol.27 , pp. 27-33
    • Felsenstein, J.1
  • 5
    • 0019797407 scopus 로고
    • Evolutionary trees from DNA sequences: A maximum likelihood approach
    • Felsenstein, J. (1981) Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol., 17, 368-376.
    • (1981) J. Mol. Evol. , vol.17 , pp. 368-376
    • Felsenstein, J.1
  • 7
    • 0020286044 scopus 로고
    • Branch and bound algorithms to determine minimal evolutionary trees
    • Hendy, M.D. and Penny, D. (1982) Branch and bound algorithms to determine minimal evolutionary trees. Maths. Biosci., 59, 277-290.
    • (1982) Maths. Biosci. , vol.59 , pp. 277-290
    • Hendy, M.D.1    Penny, D.2
  • 9
    • 0030732143 scopus 로고    scopus 로고
    • Majority-rule consensus of phylogenetic trees obtained by maximum-likelihood analysis
    • Jermiin, L.S., Olsen, G.J., Mengersen, K.L. and Easteal, S. (1997) Majority-rule consensus of phylogenetic trees obtained by maximum-likelihood analysis. Mol. Biol. Evol., 14, 1297-1302.
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 1297-1302
    • Jermiin, L.S.1    Olsen, G.J.2    Mengersen, K.L.3    Easteal, S.4
  • 10
    • 0024307824 scopus 로고
    • Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea
    • Kishino, H. and Hasegawa, M. (1989) Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol., 29, 170-179.
    • (1989) J. Mol. Evol. , vol.29 , pp. 170-179
    • Kishino, H.1    Hasegawa, M.2
  • 12
    • 84950945692 scopus 로고
    • Model selection and accounting for model uncertainty in graphical models using Occam's window
    • Madigan, D. and Raftery, A.E. (1994) Model selection and accounting for model uncertainty in graphical models using Occam's window. J. Amer. Stat. Assoc., 89, 1535-1546.
    • (1994) J. Amer. Stat. Assoc. , vol.89 , pp. 1535-1546
    • Madigan, D.1    Raftery, A.E.2
  • 15
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • Olsen, G.J., Matsuda, H., Hagstrom, R. and Overbeek, R. (1994) fastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci., 10, 41-48.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 17
    • 0026495826 scopus 로고
    • Progress with methods for constructing evolutionary trees
    • Penny, D., Hendy, M.D. and Steel, M.A. (1992) Progress with methods for constructing evolutionary trees. Trends Ecol. Evol., 7, 73-79.
    • (1992) Trends Ecol. Evol. , vol.7 , pp. 73-79
    • Penny, D.1    Hendy, M.D.2    Steel, M.A.3
  • 18
    • 0020668888 scopus 로고
    • Numbering binary trees with labeled terminal vertices
    • Rohlf, F.J. (1983) Numbering binary trees with labeled terminal vertices. Bul. Math. Biol., 45 (1), 33-40.
    • (1983) Bul. Math. Biol. , vol.45 , Issue.1 , pp. 33-40
    • Rohlf, F.J.1
  • 19
    • 0029836454 scopus 로고    scopus 로고
    • Quartet puzzling: A quartet maximum-likelihood method for reconstructing tree topologies
    • Strimmer, K. and von Haeseler, A. (1996) Quartet puzzling: a quartet maximum-likelihood method for reconstructing tree topologies. Mol. Biol. Evol., 13, 964-969.
    • (1996) Mol. Biol. Evol. , vol.13 , pp. 964-969
    • Strimmer, K.1    Von Haeseler, A.2
  • 21
    • 0001336205 scopus 로고    scopus 로고
    • Phylogenetic inference
    • Hillis, D.M., Moritz, C. and Mable, B.K. (eds). Sinauer Associates, Sunderland
    • Swofford, D.L., Olsen, G.J., Waddell, P.J. and Hillis, D.M. (1996) Phylogenetic inference. In Hillis, D.M., Moritz, C. and Mable, B.K. (eds), Molecular Systematics. Sinauer Associates, Sunderland, pp. 407-514.
    • (1996) Molecular Systematics , pp. 407-514
    • Swofford, D.L.1    Olsen, G.J.2    Waddell, P.J.3    Hillis, D.M.4
  • 23
    • 0030451420 scopus 로고    scopus 로고
    • Among-site rate variation and its impact on phylogenetic analyses
    • Yang, Z. (1996) Among-site rate variation and its impact on phylogenetic analyses. Trends Ecol. Evol., 11, 367-372.
    • (1996) Trends Ecol. Evol. , vol.11 , pp. 367-372
    • Yang, Z.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.