Transposition of ISHp608, member of an unusual family of bacterial insertion sequences

EMBO Journal

Volumn 24, Issue 18, 2005, Pages 3325-3338

  Ton Hoang, Bao ^a   Guynet, Catherine ^a   Ronning, Donald R ^b   Cointin Marty, Brigitte ^a   Dyda, Fred ^b   Chandler, Michael ^a  

^a UPS   (France)

^b NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

Excision; In vitro; In vivo; Integration; Transposase activity

Indexed keywords

SINGLE STRANDED DNA; TRANSPOSASE;

ARTICLE; BACTERIAL GENETICS; GENE DELETION; GENE INSERTION SEQUENCE; GENE STRUCTURE; GENE TARGETING; IN VITRO STUDY; MULTIGENE FAMILY; OPEN READING FRAME; PRIORITY JOURNAL; TRANSPOSON;

AMINO ACID SEQUENCE; BASE SEQUENCE; CATALYTIC DOMAIN; DNA TRANSPOSABLE ELEMENTS; HELICOBACTER PYLORI; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; PLASMIDS; RECOMBINATION, GENETIC; SEQUENCE ALIGNMENT; SEQUENCE DELETION; TRANSPOSASES; TYROSINE;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; HELICOBACTER PYLORI;

EID: 25144496154     PISSN: 02614189     EISSN: None     Source Type: Journal    
DOI: 10.1038/sj.emboj.7600787     Document Type: Article

References (36)

1. Bernales I, Mendiola MV, de la Cruz F (1999) Intramolecular transposition of insertion sequence IS91 results in second-site simple insertions. Mol Microbiol 33: 223-234
2. Beuzon CR, Casadesus J (1997) Conserved structure of IS200 elements in Salmonella. Nucleic Acids Res 25: 1355-1361
3. Beuzon CR, Chessa D, Casadesus J (2004) IS200: an old and still bacterial transposon. Int Microbiol 7: 3-12
4. Beuzon CR, Marques S, Casadesus J (1999) Repression of IS200 transposase synthesis by RNA secondary structures. Nucleic Acids Res 27: 3690-3695
5. Bowater R, Aboul-ela F, Lilley DM (1991) Large-scale stable opening of supercoiled DNA in response to temperature and supercoiling in (A + T)-rich regions that promote low-salt cruciform extrusion. Biochemistry 30: 11495-11506
6. Byrd DR, Matson SW (1997) Nicking by transesterification: the reaction catalysed by a relaxase. Mol Microbiol 25: 1011-1022
7. Cam K, Bejar S, Gil D, Bouche JP (1988) Identification and sequence of gene dicB: translation of the division inhibitor from an inphase internal start. Nucleic Acids Res 16: 6327-6338
8. Chandler M, Mahillon J (2002) Insertion sequences revisited. In Mobile DNA, Craig NL, Craigie R, Gellert M, Lambowitz A (eds), Vol. II, pp 305-366. Washington, DC: ASM Press
9. Cornet F, Chandler M (2004) Non-homologous recombination. In Evolution: Gene Establishment, Survival, and Exchange, Miller CJ, Day M (eds), pp 36-66. Washington, DC: ASM Press
10. Corpet F (1988) Multiple sequence alignment with hierarchical clustering. Nucleic Acids Res 16: 10881-10890
11. Curcio MJ, Derbyshire KM (2003) The outs and ins of transposition: from mu to kangaroo. Nat Rev Mol Cell Biol 4: 865-877
12. del Pilar Garcillan-Barcia M, Bernales I, Mendiola MV, de la Cruz F (2001) Single-stranded DNA intermediates in IS91 rolling-circle transposition. Mol Microbiol 39: 494-501
13. Devalckenaere A, Odaert M, Trieu-Cuot P, Simonet M (1999) Characterization of IS1541-like elements in Yersinia enterocolitica and Yersinia pseudotuberculosis. FEMS Microbiol Lett 176: 229-233
14. Espinosa M, del Solar G, Rojo F, Alonso JC (1995) Plasmid rolling circle replication and its control. FEMS Microbiol Lett 130: 111-120
15. Furlong JC, Sullivan KM, Murchie AI, Gough GW, Lilley DM (1989) Localized chemical hyperreactivity in supercoiled DNA: evidence for base unpairing in sequences that induce low-salt cruciform extrusion. Biochemistry 28: 2009-2017
16. Garcillan-Barcia MP, Bernales I, Mendiola MV, De la Cruz F (2002) IS91 rolling circle transposition. In Mobile DNA, Craig NL, Craigie R, Gellert M, Lambowitz A (eds) pp 891-904. Washington, DC: ASM press
17. Haack KR (1995) The activity of IS200 in Salmonella typhimurium. PhD thesis, University of Utah
18. Ilyina TV, Koonin EV (1992) Conserved sequence motifs in the initiator proteins for rolling circle DNA replication encoded by diverse replicons from eubacteria, eucaryotes and archaebacteria. Nucleic Acids Res 20: 3279-3285
19. Kersulyte D, Akopyants NS, Clifton SW, Roe BA, Berg DE (1998) Novel sequence organization and insertion specificity of IS605 and IS606: chimaeric transposable elements of Helicobacter pylori. Gene 223: 175-186
20. Kersulyte D, Mukhopadhyay AK, Shirai M, Nakazawa T, Berg DE (2000) Functional organization and insertion specificity of IS607, a chimeric element of Helicobacter pylori. J Bacteriol 182: 5300-5308
21. Kersulyte D, Velapatino B, Dailide G, Mukhopadhyay AK, Ito Y, Cahuayme L, Parkinson AJ, Gilman RH, Berg DE (2002) Transposable element ISHp608 of Helicobacter pylori: nonrandom geographic distribution, functional organization, and insertion specificity. J Bacteriol 184: 992-1002
22. Khan SA (1997) Rolling-circle replication of bacterial plasmids. Microbiol Mol Biol Rev 61: 442-455
23. Lam S, Roth JR (1983) IS200: a Salmonella-specific insertion sequence. Cell 34: 951-960
24. Llosa M, Gomis-Ruth FX, Coll M, de la Cruz Fd F (2002) Bacterial conjugation: a two-step mechanism for DNA transport. Mol Microbiol 45: 1-8
25. Manillon J, Chandler M (1998) Insertion sequences. Microbiol Mol Biol Rev 62: 725-774
26. Mendiola MV, Bernales I, de la Cruz F (1994) Differential roles of the transposon termini in IS91 transposition. Proc Natl Acad Sci USA 91: 1922-1926
27. Mendiola MV, de la Cruz F (1992) IS91 transposase is related to the rolling-circle-type replication proteins of the pUB110 family of plasmids. Nucleic Acids Res 20: 3521
28. Mendiola MV, Jubele Y, de la Cruz F (1992) DNA sequence of IS91 and identification of the transposase gene. J Bacteriol 174: 1345-1351
29. Mizuuchi K, Mizuuchi M, Gellert M (1982) Cruciform structures in palindromic DNA are favored by DNA supercoiling. J Mol Biol 156: 229-243
30. Odaert M, Devalckenaere A, Trieu-Cuot P, Simonet M (1998) Molecular characterization of IS1541 insertions in the genome of Yersinia pestis. J Bacteriol 180: 178-181
31. Polard P, Chandler M (1995) An in vivo transposase-catalyzed single-stranded DNA circularization reaction. Genes Dev 9: 2846-2858
32. Polard P, Prere MF, Fayet O, Chandler M (1992) Transposase-induced excision and circularization of the bacterial insertion sequence IS911. EMBO J 11: 5079-5090
33. Stanley TL, Ellermeier CD, Slauch JM (2000) Tissue-specific gene expression identifies a gene in the lysogenic phage Gifsy-1 that affects Salmonella enterica serovar typhimurium survival in Peyer's patches. J Bacteriol 182: 4406-4413
34. Tavakoli N, Comanducci A, Dodd HM, Lett MC, Albiger B, Bennett P (2000) IS1294, a DNA element that transposes by RC transposition. Plasmid 44: 66-84
35. Turlan C, Chandler M (1995) IS1-mediated intramolecular rearrangements: formation of excised transposon circles and replicative deletions. EMBO J 14: 5410-5421
36. Weiner MP, Costa GL (1994) Rapid PCR site-directed mutagenesis. PCR Methods Appl 4: S131-S136