Conserved structure of IS200 elements in Salmonella

Nucleic Acids Research

Volumn 25, Issue 7, 1997, Pages 1355-1361

  Beuzón, Carmen R ^a   Casadesús, Josep ^a  

^a UNIVERSITY OF SEVILLE   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ARTICLE; BACTERIAL GENE; BINDING SITE; DNA SEQUENCE; GENE INSERTION; GENETIC CONSERVATION; NONHUMAN; OPEN READING FRAME; PRIORITY JOURNAL; RIBOSOME; SALMONELLA; SALMONELLA TYPHIMURIUM;

AMINO ACID SEQUENCE; BASE SEQUENCE; CONSERVED SEQUENCE; DNA TRANSPOSABLE ELEMENTS; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; OPEN READING FRAMES; RESTRICTION MAPPING; SALMONELLA; SALMONELLA TYPHIMURIUM; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

BACTERIA (MICROORGANISMS); HUMULUS LUPULUS; SALMONELLA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR ABORTUSOVIS; SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 0030786362     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.7.1355     Document Type: Article

References (66)

1. Lam, S. T. and Roth J. R. (1983) Cell, 34, 951-960.
2. Gibert, I., Barbé, J. and Casadesús, J. (1990). J. Gen. Microbiol., 136, 2555-2560.
3. Bisercic, M. and Ochman, H. (1993) Genetics, 133, 449-454.
4. Simonet, M., Riot, B., Fortineau, N. and Berche, P. (1996) Infect. Immun., 64, 375-379.
5. Lam, S. T. and Roth, J. R. (1983) Genetics, 105, 801-811.
6. Sanderson, K. E., Sciore, P., Liu, S. L. and Hessel, A. (1993) J. Bacterial., 175, 7624-7628.
7. Casadesús, J. and Roth, J. R. (1989) Mol. Gen. Genet., 216, 210-216.
8. O'Reilly, C., Black, G. W., Laffey, R. and McConnell, D. J. (1990) J. Bacteriol., 172, 6599-6601.
9. Casadesús, J., Beuzón, C. R. and Gibert, I. (1992) Genet. (Life Sci. Adv.), 11, 179-186.
10. Beuzón, C. R. (1996) Structural and functional analysis of insertion element IS200. Ph. D. Thesis, University of Seville, Seville, Spain.
11. Schiaffino, A., Beuzón, C. R., Uzzau, S., Leori, G., Cappuccinelli. P., Casadesús, J. and Rubino, S. (1996) Appl. Environ. Microbiol., 62, 2375-2380.
12. Galas, D. J. and Chandler, M. (1989) In Berg, D. E. and Howe, M. M. (eds) Mobile DNA. American Society for Microbiology, Washington, DC, pp. 109-162.
13. Finnegan, D. J. (1989) Trends Genet., 5, 103-107.
14. Ochman, H. and Wilson, A. C. (1987) In Neidhardt, F. C., Ingraham, J. L., Low, K. B., Magasanik, B., Schaechter, M. and Umbarger, H. E. (eds) Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology. American Society for Microbiology, Washington, DC, pp. 1649-1654.
15. Lawrence, J. G., Hartl, D. L. and Ochman, H. (1991) J. Gen. Microbiol., 137, 1911-1921.
16. Bisercic, M. and Ochman, H. (1993) J. Bacteriol., 175, 7863-7868.
17. Colombo, M. M., Leori, G., Rubino, S., Barbato, A. and Cappuccinelli, P. (1992) J. Gen. Microbiol., 138, 725-731.
18. Inoue, H., Nojima, H. and Okayama, H. (1990) Gene, 93, 26-28.
19. Yanisch-Perron, V., Vieira, J. and Messing, J. (1985) Gene, 33, 103-119.
20. Garzón, A., Beuzón, C. R., Mahan, M. J. and Casadesús, J. (1996) Mol. Gen. Genet., 250, 570-580.
21. Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989) Molecular Cloning; A Laboratory Manual. 2nd. edition. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
22. Schmieger, H. (1972) Mol. Gen. Genet., 119, 75-88.
23. Tinge, S. A. and Curtiss, R. III (1990) Infect. Immun., 58, 3084-3092.
24. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. and Struhl, K. (1987) Current Protocols in Molecular Biology. Greene Publishing Associates & Wiley Interscience, New York, NY.
25. Stephen, D., Jones, C. and Schofield, P. J. (1990) Nucleic Acids Res., 18, 7463-7464.
26. Holmes, D. S. and Quigley, M. (1981) Anal. Biochem., 114, 193-197.
27. Southern, E. M. (1975) J. Mol. Biol. 98, 503-517.
28. Boyle, J. S. and Lew, A. M. (1995) Trends Genet., 11, 8.
29. Sanger, F., Nicklen, S. and Coulson, A. R. (1977) Proc. Natl. Acad. Sci. USA, 74, 5463-5467.
30. Program Manual for the Wisconsin Package, Version 8 (1994).
31. Zuker, M. (1989) Methods Enzymol., 180, 262-288.
32. Swofford, D. L. (1993) PAUP: phylogenetic analysis using parsimony, version 3.1.1. Illinois Natural History Survey, Champaign, IL.
33. Sneath, P. H. A. and Sokal, R. R. (1973) Numerical Taxonomy: W. H. Freeman & Co, San Francisco.
34. Gibert, I., Carroll, K., Hillyard, D. R., Barbé, J. and Casadesús, J. (1991) Nucleic Acids Res., 19, 1343.
35. Winkler, M. E. (1996) In Neidhardt, F. C., Curtiss, R. III, Ingraham, J. L., Lin, A. C. C., Low, K. B., Magasanik, B., Reznikoff, W. S., Riley, M., Schaechter, M. and Umbarger, H. E. (eds) Escherichia coli and Salmonella. Cellular and Molecular Biology. 2nd. edition. American Society for Microbiology, Washington, DC, pp. 485-505.
36. Arber, W., Iida, S., Jutte, H., Caspers, P., Meyer, J. and Hänni, C. (1978) Cold Spring Harbor Symp. Quant. Biol., 43, 1197-1208.
37. Green, L., Miller, R., Dykhuizen, D. E. and Hartl, D. L. (1984) Proc. Natl. Acad. Sci. USA, 81, 4500-4504.
38. Naas, T., Blot, M., Fitch, W. M. and Arber, W. (1994) Genetics, 136, 721-730.
39. Anderson, R. P. and Roth, J. R. (1979) Cold Spring Harbor Symp. Quant. Biol., 43, 1083-1087.
40. Lam, S. T. and Roth, J. R. (1986) J. Mol. Biol., 187, 157-167.
41. Bik, E. M., Gouw, R. D. and Mooi, F. R. (1996) J. Clin. Microbiol., 34, 1453-1461.
42. Haack, K. R. and Roth, J. R. (1995) Genetics, 141, 1245-1252.
43. Shine, J. and Dalgamo, L. (1975) Nature, 254, 34-38.
44. Draper, D. E. (1996) In Neidhardt, F. C., Curtiss, R. III, Ingraham, J. L., Lin, A. C. C., Low, K. B., Magasanik, B., Reznikoff, W, S., Riley, M., Schaechter, M. and Umbarger, H. E. (eds) Escherichia coli and Salmonella. Cellular and Molecular Biology. 2nd. edition. American Society for Microbiology, Washington, D. C., pp. 902-908.
45. Youderian, P., Sugiono, P., Brewer, K., Higgins, N. P. and Elliott, T. (1988) Genetics, 118, 581-592.
46. Burnens, A. P., Stanley, J., Hunkizer, P., Brodard, I. and Nicolet, J. (unpublished) Z54217.
47. Brenner, D. J. (1984) In Krieg, N. R. and Holt, J. G. (eds) Bergey's Manual of Systematic Bacteriology. Williams & Wilkins, Baltimore and London, pp. 408-430.
48. Friedrich, M. J., Kinsey, N. E., Vila, J. and Kadner, R. J. (1993) Mol. Microbiol., 8, 543-558.
49. Young, V. B., Miller, V. L., Falkow, S. and Schoolnik, G. K. (1990) Mol. Microbiol., 4, 1119-1128.
50. Pepe, J. C., Badger, J. L. and Miller, V. L. (1994) Mol. Microbiol., 11, 123-135.
51. Isberg, R. R., Voorhis, D. L. and Falkow, S. (1987) Cell, 50, 769-778.
52. Meyer, J., Iida, S. and Arber, W. (1980) Mol. Gen. Genet., 178, 471-473.
53. Galas, D. J., Calos, P. and Miller, J. H. (1980) J. Mol. Biol., 144, 19-41.
54. Zerbib, D., Gamas, P., Chandler, M., Prentki, P., Bass, S. and Galas, D. (1985) J. Mol. Biol., 185, 517-524.
55. Maynard Smith, J., Dowson, C. G. and Spratt, B. G. (1991) Nature, 349, 29-31.
56. Lawrence, J. G., Ochman, H. and Hartl, D. L. (1992) Genetics, 131, 9-20.
57. Chaconas, G. (1987) In Symonds, N., Toussaint, A., van de Putte, P. and Howe, M. M. Bacteriophage Mu. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, pp. 137-157.
58. Reimmann, C., Moore, R., Little, S., Savioz, A., Willetts, N. S. and Haas, D. (1989) Mol. Gen. Genet., 215, 416-424.
59. Berg, D. E., Schmandt, M. A. and Lowe, J. B. (1983) Genetics, 105, 813-828.
60. Lupski, J. R., Gershon, P., Osaki, L. S. and Godson, G. N. (1984) Gene, 30, 99-106.
61. Kothary, R. K., Jones, D. and Candido, P. E. (1985) J. Bacteriol., 164, 957-959.
62. Sengstag, C., Iida, S., Hiestand-Nauer, R. and Arber, W. (1986) Gene, 49, 153-156.
63. Stellwagen, N. C. (1983) Biochemistry, 22, 6186-6193.
64. Gamas, P., Chandler, M. G., Prenkti, P. and Galas, D. J. (1987) J. Mol. Biol., 195, 261-272.
65. Iida, S., Hiestand-Nauer, R. and Arber, W. (1985) Proc. Natl. Acad. Sci. USA, 82, 839-843.
66. Doolittle, W. F., Kirkwood, T. B. L. and Dempster, M. A. H. (1984) Nature, 307, 501-502.