Discovering neuropeptides in Caenorhabditis elegans by two dimensional liquid chromatography and mass spectrometry

Biochemical and Biophysical Research Communications

Volumn 335, Issue 1, 2005, Pages 76-86

  Husson, Steven J ^a   Clynen, Elke ^a   Baggerman, Geert ^a   De Loof, Arnold ^a   Schoofs, Liliane ^a  

^a UNIVERSITY OF LEUVEN   (Belgium)

Author keywords

Caenorhabditis elegans; FaRP; flp; FMRFamide; Liquid chromatography; Mass spectrometry; MudPit; Neuropeptide; nlp; Receptor; Two dimensional

Indexed keywords

CAENORHABDITIS ELEGANS PROTEIN; NEUROPEPTIDE; NEUROPEPTIDE LIKE PROTEIN; PHENYLALANYLMETHIONYLARGINYLPHENYLALANINAMIDE LIKE PEPTIDE; PROTEIN PRECURSOR; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; CAENORHABDITIS ELEGANS; DATA BASE; INVERTEBRATE; LIQUID CHROMATOGRAPHY; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; TANDEM MASS SPECTROMETRY;

AMIDES; AMINO ACID SEQUENCE; ANIMALS; CAENORHABDITIS ELEGANS; CHROMATOGRAPHY, LIQUID; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; NEUROPEPTIDES;

CAENORHABDITIS ELEGANS; INVERTEBRATA;

EID: 25144489182     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.07.044     Document Type: Article

References (39)

1. T.A. Day, and A.G. Maule Parasitic peptides! The structure and function of neuropeptides in parasitic worms Peptides 20 1999 999 1019
2. C. Li, K. Kim, and L.S. Nelson FMRFamide-related neuropeptide gene family in Caenorhabditis elegans Brain Res. 848 1999 26 34
3. K. Kim, and C. Li Expression and regulation of an FMRFamide-related neuropeptide gene family in Caenorhabditis elegans J. Comp. Biol. 475 2004 540 550
4. A.N. Nathoo, R.A. Moeller, B.A. Westlund, and A.C. Hart Identification of neuropeptide-like protein gene families in Caenorhabditis elegans and other species Proc. Natl. Acad. Sci. USA 98 2001 14000 14005
5. N.J. Marks, C. Shaw, A.G. Maule, J.P. Davis, D.W. Halton, P. Verhaert, T.G. Geary, and D.P. Thompson Isolation of AF2 (KHEYLRFamide) from Caenorhabditis elegans: evidence for the presence of more than one FMRFamide-related peptide-encoding gene Biochem. Biophys. Res. Commun. 217 1995 845 851
6. N.J. Marks, A.G. Maule, T.G. Geary, D.P. Thompson, J.P. Davis, D.W. Halton, P. Verhaert, and C. Shaw APEASPFIRFamide, a novel FMRFamide-related decapeptide from Caenorhabditis elegans: structure and myoactivity Biochem. Biophys. Res. Commun. 231 1997 591 595
7. N.J. Marks, A.G. Maule, T.G. Geary, D.P. Thompson, C. Li, D.W. Halton, and C. Shaw KSAYMRFamide (PF3/AF8) is present in the free-living nematode, Caenorhabditis elegans Biochem. Biophys. Res. Commun. 248 1998 422 425
8. N.J. Marks, A.G. Maule, C. Li, L.S. Nelson, D.P. Thompson, S. Alexander-Bowman, T.G. Geary, D.W. Halton, P. Verhaert, and C. Shaw Isolation, pharmacology and gene organization of KPSFVRFamide: a neuropeptide from Caenorhabditis elegans Biochem. Biophys. Res. Commun. 254 1999 222 230
9. N.J. Marks, C. Shaw, D.W. Halton, D.P. Thompson, T.G. Geary, C. Li, and A.G. Maule Isolation and preliminary biological assessment of AADGAPLIRFamide and SVPGVLRFamide from Caenorhabditis elegans Biochem. Biophys. Res. Commun. 286 2001 1170 1176
10. M.L. Rosoff, K.E. Doble, D.A. Price, and C. Li The flp-1 propeptide is processed into multiple, highly similar FMRFamide-like peptides in Caenorhabditis elegans Peptides 14 1993 331 338
11. E. Clynen, G. Baggerman, D. Veelaert, A. Cerstiaens, D. Van Der Horst, L. Harthoorn, R. Derua, E. Waelkens, A. De Loof, and L. Schoofs Peptidomics of the pars intercerebralis-corpus cardiacum complex of the migratory locust, Locusta migratoria Eur. J. Biochem. 268 2001 1929 1939
12. G. Baggerman, A. Cerstiaens, A. De Loof, and L. Schoofs Peptidomics of the larval Drosophila melanogaster central nervous system J. Biol. Chem. 277 2002 40368 40374
13. G. Baggerman, K. Boonen, P. Verleyen, A. De Loof, and L. Schoofs Peptidomic analysis of the larval Drosophila melanogaster central nervous system by 2 dimensional capillary liquid chromatography Q-Tof mass spectrometry J. Mass Spectrom. 40 2004 250 260
14. D.N. Perkins, D.J. Pappin, D.M. Creasy, and J.S. Cottrell Probability-based protein identification by searching sequence databases using mass spectrometry data Electrophoresis 20 1999 3551 3567
15. J.D. Bendtsen, H. Nielsen, G. von Heijne, and S. Brunak Improved prediction of signal peptides: SignalP 3.0 J. Mol. Biol. 340 2004 783 795
16. M.L. Rosoff, T.R. Burglin, and C. Li Alternatively spliced transcripts of the flp-1 gene encode distinct FMRFamide-like peptides in Caenorhabditis elegans J. Neurosci. 12 1992 2356 2361
17. 2)-like peptides Brain Res. Mol. Brain Res. 24 1994 238 246
18. L.S. Nelson, M.L. Rosoff, and C. Li Disruption of a neuropeptide gene, flp-1, causes multiple behavioral defects in Caenorhabditis elegans Science 281 1998 1686 1690
19. T.G. Geary, D.A. Price, J.W. Bowman, C.A. Winterrowd, C.D. Mackenzie, R.D. Garrison, J.F. Williams, and A.R. Friedman Two FMRFamide-like peptides from the free-living nematode Panagrellus redivivus Peptides 13 1992 209 214
20. R. Nichols, S.A. Schneuwly, and J.E. Dixon Identification and characterization of a Drosophila homologue to the vertebrate neuropeptide cholecystokinin J. Biol. Chem. 263 1988 12167 12170
21. E.C. Cropper, M.W. Miller, R. Tenenbaum, M.A. Kolks, I. Kupfermann, and K.R. Weiss Structure and action of buccalin: a modulatory neuropeptide localized to an identified small cardioactive peptide-containing cholinergic motor neuron of Aplysia californica Proc. Natl. Acad. Sci. USA 85 1988 6177 6181
22. J. Strangier, C. Hilbich, S. Burdzik, and R. Keller Orcokinin: a novel myotropic peptide from the nervous system of the crayfish, Orconectes limosus Peptides 13 1992 859 864
23. P. McVeigh, S. Leech, J.R. Mair, N.J. Marks, T.G. Geary, A.G. Maule, Analysis of FMRFamide-like peptide (FLP) diversity in phylum Nematoda, Int. J. Parasitol. (2005), in press.
24. L. Schoofs, G.M. Holman, T.K. Hayes, R.J. Nachman, and A. De Loof Isolation, identification and synthesis of locustamyoinhibiting peptide (LOM-MIP), a novel biologically active neuropeptide from Locusta migratoria Regul. Pept. 36 1991 111 119
25. M.B. Blackburn, R.M. Wagner, J.P. Kochansky, D.J. Harrison, P. Thomas-Laemont, and A.K. Raina The identification of two myoinhibitory peptides, with sequence similarities to the galanins, isolated from the ventral nerve cord of Manduca sexta Regul. Pept. 57 1995 213 219
26. Y.J. Hua, Y. Tanaka, K. Nakamura, M. Sakakibara, S. Nagata, and H. Kataoka Identification of a prothoracicostatic peptide in the larval brain of the silkworm Bombyx mori J. Biol. Chem. 274 1999 31169 31173
27. M.W. Lorenz, R. Kellner, and K.H. Hoffmann A family of neuropeptides that inhibit juvenile hormone biosynthesis in the cricket Gryllus bimaculatus J. Biol. Chem. 270 1995 21103 21108
28. M.W. Lorenz, R. Kellner, K.H. Hoffmann, and G. Gäde Identification of multiple peptides homologous to cockroach and cricket allatostatins in the stick insect Carausius morosus Insect Biochem. Mol. Biol. 30 2000 711 718
29. M. Williamson, C. Lenz, A.M. Winther, D.R. Nassel, C.J. Grimmelikhuijzen, and M.E. Winther Molecular cloning, genomic organization, and expression of a B-type (cricket-type) allatostatin preprohormone from Drosophila melanogaster Biochem. Biophys. Res. Commun. 281 2001 544 550
30. T. Leitz, K. Morand, and M. Mann Metamorphosin A: a novel peptide controlling development of the lower metazoan Hydractinia echinata (Coelenterata, Hydrozoa) Dev. Biol. 163 1994 440 446
31. T. Takahashi, Y. Muneoka, J. Lohmann, M.S. Lopez de Haro, G. Solleder, T.C. Bosch, C.N. David, H.R. Bode, O. Koizumi, H. Shimizu, M. Hatta, T. Fujisawa, and T. Sugiyama Systematic isolation of peptide signal molecules regulating development in hydra: LWamide and PW families Proc. Natl. Acad. Sci. USA 94 1997 1241 1246
32. C.I. Bargmann Neurobiology of the Caenorhabditis elegans genome Science 282 1998 2028 2033
33. T.M. Kubiak, M.J. Larsen, M.R. Zantello, J.W. Bowman, S.C. Nulf, and D.E. Lowery Functional annotation of the putative orphan Caenorhabditis elegans G-protein-coupled receptor C10C6.2 as a FLP15 peptide receptor J. Biol. Chem. 278 2003 42115 42120
34. T.M. Kubiak, M.J. Larsen, S.C. Nulf, M.R. Zantello, K.J. Burton, J.W. Bowman, T. Modric, and D.E. Lowery Differential activation of "social" and "solitary" variants of the Caenorhabditis elegans G protein-coupled receptor NPR-1 by its cognate ligand AF9 J. Biol. Chem. 278 2003 33724 33729
35. C. Rogers, V. Reale, K. Kim, H. Chatwin, C. Li, P. Evans, and M. De Bono Inhibition of Caenorhabditis elegans social feeding by FMRFamide-related peptide activation of NPR-1 Nat. Neurosci. 6 2003 1178 1185
36. I. Mertens, A. Vandingenen, T. Meeusen, T. Janssen, W. Luyten, R.J. Nachman, A. De Loof, and L. Schoofs Functional characterization of the putative orphan neuropeptide G-protein coupled receptor C26F1.6 in Caenorhabditis elegans FEBS Lett. 573 2004 55 60
37. I. Mertens, A. Vandingenen, E. Clynen, R.J. Nachman, A. De Loof, and L. Schoofs Characterization of an RFamide-related peptide orphan GPCR in C. elegans Ann. NY Acad. Sci. 1040 2005 410 412
38. I. Mertens, T. Meeusen, T. Janssen, R.J. Nachman, and L. Schoofs Molecular characterization of two G protein-coupled receptor splice variants as FLP2 receptors in Caenorhabditis elegans Biochem. Biophys. Res. Commun. 330 2005 967 974
39. C. Couillault, N. Pujol, J. Reboul, L. Sabatier, J.F. Guichou, Y. Kohara, and J.J. Ewbank TLR-independent control of innate immunity in Caenorhabditis elegans by the TIR domain adaptor protein TIR-1, an ortholog of human SARM Nat. Immunol. 5 2004 488 494