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Volumn 3480, Issue I, 2005, Pages 707-715

Pocket recognition on a protein using Euclidean Voronoi diagram of atoms

Author keywords

[No Author keywords available]

Indexed keywords

ATOMS; COMPUTATION THEORY; COMPUTATIONAL COMPLEXITY; COMPUTATIONAL GEOMETRY; DRUG PRODUCTS; PROTEINS;

EID: 24944530047     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11424758_73     Document Type: Conference Paper
Times cited : (6)

References (16)
  • 2
    • 0021107965 scopus 로고
    • Solvent-accessible surfaces of proteins and nucleic acids
    • Connolly, M.L.: Solvent-accessible surfaces of proteins and nucleic acids. Science. 221 (1983) 709-713.
    • (1983) Science , vol.221 , pp. 709-713
    • Connolly, M.L.1
  • 3
    • 0002052671 scopus 로고    scopus 로고
    • On the definition and the construction of pockets in macromolecules
    • Edelsbrunner, H., Facello, M., and Liang, J.: On the definition and the construction of pockets in macromolecules. Discrete Applied Mathematics. 88 (1998) 83-102.
    • (1998) Discrete Applied Mathematics , vol.88 , pp. 83-102
    • Edelsbrunner, H.1    Facello, M.2    Liang, J.3
  • 4
    • 0029004611 scopus 로고
    • The volume of atoms on the protein surface: Calculated from simulation, using Voronoi polyhedra
    • Gerstein, M., Tsai, J., and Levitt, M.: The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra. Journal of Molecular Biology. 249 (1995) 955-966.
    • (1995) Journal of Molecular Biology , vol.249 , pp. 955-966
    • Gerstein, M.1    Tsai, J.2    Levitt, M.3
  • 5
    • 0001136015 scopus 로고    scopus 로고
    • Voronoi cell: New method for allocation of space among atoms: Elimination of avoidable errors in calculation of atomic volume and density
    • Goede, A., Preissner, R., and Frömmel, C.: Voronoi cell: new method for allocation of space among atoms: elimination of avoidable errors in calculation of atomic volume and density. Journal of Computational Chemistry. 18 (1997) 1113-1123.
    • (1997) Journal of Computational Chemistry , vol.18 , pp. 1113-1123
    • Goede, A.1    Preissner, R.2    Frömmel, C.3
  • 6
    • 0035393555 scopus 로고    scopus 로고
    • Voronoi diagram of a circle set from Voronoi diagram of a point set: I
    • Kim, D.-S., Kim, D., and Sugihara, K.: Voronoi diagram of a circle set from Voronoi diagram of a point set: I. Topology. Computer Aided Geometric Design. 18 (2001) 541-562.
    • (2001) Topology. Computer Aided Geometric Design , vol.18 , pp. 541-562
    • Kim, D.-S.1    Kim, D.2    Sugihara, K.3
  • 7
    • 0035393828 scopus 로고    scopus 로고
    • Voronoi diagram of a circle set from Voronoi diagram of a point set: II
    • Kim, D.-S., Kim, D., and Sugihara, K.: Voronoi diagram of a circle set from Voronoi diagram of a point set: II. Geometry, Computer Aided Geometric Design. 18 (2001) 563-585.
    • (2001) Geometry, Computer Aided Geometric Design , vol.18 , pp. 563-585
    • Kim, D.-S.1    Kim, D.2    Sugihara, K.3
  • 10
    • 0026730489 scopus 로고
    • Structure-based strategies for drug design and discovery
    • Kunts, I.D.: Structure-based strategies for drug design and discovery. Science. 257 (1992) 1078-1082.
    • (1992) Science , vol.257 , pp. 1078-1082
    • Kunts, I.D.1
  • 11
    • 0015222647 scopus 로고
    • The interpretation of protein structures: Estimation of static accessibility
    • Lee, B. and Richards, F.M.: The interpretation of protein structures: estimation of static accessibility. Journal of Molecular Biology. 55 (1971) 379-400.
    • (1971) Journal of Molecular Biology , vol.55 , pp. 379-400
    • Lee, B.1    Richards, F.M.2
  • 12
    • 0031687653 scopus 로고    scopus 로고
    • Anatomy of protein pockets and cavities:Measurement of binding site geometry and implications for ligand design
    • Liang, J., Edelsbrunner, H., and Woodward, C.: Anatomy of protein pockets and cavities:Measurement of binding site geometry and implications for ligand design. Protein Science. 7 (1998) 1884-1897.
    • (1998) Protein Science , vol.7 , pp. 1884-1897
    • Liang, J.1    Edelsbrunner, H.2    Woodward, C.3
  • 14
    • 0029935202 scopus 로고    scopus 로고
    • The automatic search for ligand binding sites in protein of know three-dimensional strucutre using only geometric criteria
    • Peters, K. P., Fauck, J., and Frömmel, C.: The Automatic Search for Ligand Binding Sites in Protein of Know Three-dimensional Strucutre Using only Geometric Criteria. Journal of Molecular Biology. 256 (1996) 201-213.
    • (1996) Journal of Molecular Biology , vol.256 , pp. 201-213
    • Peters, K.P.1    Fauck, J.2    Frömmel, C.3
  • 15
    • 24944579751 scopus 로고    scopus 로고
    • RCSB Protein Data Bank. http://www.rcsb.org/pdb/, 2004.
    • (2004)
  • 16
    • 0031853406 scopus 로고    scopus 로고
    • New scoring schemes for protein fold recognition based on Voronoi contacts
    • Zimmer, R., Wöhler, M., and Thiele, R.: New scoring schemes for protein fold recognition based on Voronoi contacts. Bioinformatics. 14 (1998) 295-308.
    • (1998) Bioinformatics , vol.14 , pp. 295-308
    • Zimmer, R.1    Wöhler, M.2    Thiele, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.