-
1
-
-
0347264011
-
Using PRAM algorithms on a uniform-memory-access shared-memory architecture
-
Brodal, G., Frigioni, D., Marchetti-Spaccamela, A., eds.: Proc. 5th Int'l Workshop on Algorithm Engineering (WAE 2001), Århus, Denmark, Springer-Verlag
-
Bader, D., Illendula, A., Moret, B.M., Weisse-Bernstein, N.: Using PRAM algorithms on a uniform-memory-access shared-memory architecture. In Brodal, G., Frigioni, D., Marchetti-Spaccamela, A., eds.: Proc. 5th Int'l Workshop on Algorithm Engineering (WAE 2001). Volume 2141 of Lecture Notes in Computer Science., Århus, Denmark, Springer-Verlag (2001) 129-144
-
(2001)
Lecture Notes in Computer Science
, vol.2141
, pp. 129-144
-
-
Bader, D.1
Illendula, A.2
Moret, B.M.3
Weisse-Bernstein, N.4
-
2
-
-
24944539760
-
Algorithm engineering for parallel computation
-
Fleischer, R., Meineche-Schmidt, E., Moret, B., eds.: Experimental Algorithmics. Springer-Verlag
-
Bader, D., Moret, B., Sanders, P.: Algorithm engineering for parallel computation. In Fleischer, R., Meineche-Schmidt, E., Moret, B., eds.: Experimental Algorithmics. Volume 2547 of Lecture Notes in Computer Science. Springer-Verlag (2002) 1-23
-
(2002)
Lecture Notes in Computer Science
, vol.2547
, pp. 1-23
-
-
Bader, D.1
Moret, B.2
Sanders, P.3
-
3
-
-
84945304588
-
Evaluating arithmetic expressions using tree contraction: A fast and scalable parallel implementation for symmetric multiprocessors (SMPs)
-
Sahni, S., Prasanna, V., Shukla, U., eds.: Proc. 9th Int'l Conf. on High Performance Computing (HiPC 2002), Bangalore, India, Springer-Verlag
-
Bader, D., Sreshta, S., Weisse-Bernstein, N.: Evaluating arithmetic expressions using tree contraction: A fast and scalable parallel implementation for symmetric multiprocessors (SMPs). In Sahni, S., Prasanna, V., Shukla, U., eds.: Proc. 9th Int'l Conf. on High Performance Computing (HiPC 2002). Volume 2552 of Lecture Notes in Computer Science., Bangalore, India, Springer-Verlag (2002) 63-75
-
(2002)
Lecture Notes in Computer Science
, vol.2552
, pp. 63-75
-
-
Bader, D.1
Sreshta, S.2
Weisse-Bernstein, N.3
-
4
-
-
12444293815
-
A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs)
-
Santa Fe, NM
-
Bader, D.A., Cong, G.: A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). In: Proc. Int'l Parallel and Distributed Processing Symp. (IPDPS 2004), Santa Fe, NM (2004)
-
(2004)
Proc. Int'l Parallel and Distributed Processing Symp. (IPDPS 2004)
-
-
Bader, D.A.1
Cong, G.2
-
5
-
-
12444293815
-
A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs)
-
to appear
-
Bader, D.A., Cong, G.: A fast, parallel spanning tree algorithm for symmetric multiprocessors (SMPs). Journal of Parallel and Distributed Computing (2004) to appear.
-
(2004)
Journal of Parallel and Distributed Computing
-
-
Bader, D.A.1
Cong, G.2
-
7
-
-
10044251175
-
The Euler tour technique and parallel rooted spanning tree
-
Montreal, Canada
-
Gong, G., Bader, D.A.: The Euler tour technique and parallel rooted spanning tree. In: Proc. Int'l Conf. on Parallel Processing (ICPP), Montreal, Canada (2004) 448-457
-
(2004)
Proc. Int'l Conf. on Parallel Processing (ICPP)
, pp. 448-457
-
-
Gong, G.1
Bader, D.A.2
-
8
-
-
10044224605
-
A novel FDTD application featuring OpenMP-MPI hybrid parallelization
-
Montreal, Canada
-
Su, M.F., El-Kady, I., Bader, D.A., Lin, S.Y.: A novel FDTD application featuring OpenMP-MPI hybrid parallelization. In: Proc. Int'l Conf. on Parallel Processing (ICPP), Montreal, Canada (2004) 373-379
-
(2004)
Proc. Int'l Conf. on Parallel Processing (ICPP)
, pp. 373-379
-
-
Su, M.F.1
El-Kady, I.2
Bader, D.A.3
Lin, S.Y.4
-
9
-
-
24944546869
-
A parallel state assignment algorithm for finite state machines
-
Bangalore, India, Springer-Verlag
-
Bader, D., Madduri, K.: A parallel state assignment algorithm for finite state machines. In: Proc. 11th Int'l Conf. on High Performance Computing (HiPC 2004), Bangalore, India, Springer-Verlag (2004)
-
(2004)
Proc. 11th Int'l Conf. on High Performance Computing (HiPC 2004)
-
-
Bader, D.1
Madduri, K.2
-
10
-
-
24944543046
-
Lock-free parallel algorithms: An experimental study
-
Bangalore, India, Springer-Verlag
-
Cong, G., Bader, D.: Lock-free parallel algorithms: An experimental study. In: Proc. 11th Int'l Conf. on High Performance Computing (HiPC 2004), Bangalore, India, Springer-Verlag (2004)
-
(2004)
Proc. 11th Int'l Conf. on High Performance Computing (HiPC 2004)
-
-
Cong, G.1
Bader, D.2
-
11
-
-
24944559113
-
An experimental study of parallel biconnected components algorithms on symmetric multiprocessors (SMPs)
-
Electrical and Computer Engineering Department, The University of New Mexico, Albuquerque, NM Submitted for publication
-
Cong, G., Bader, D.: An experimental study of parallel biconnected components algorithms on symmetric multiprocessors (SMPs). Technical report, Electrical and Computer Engineering Department, The University of New Mexico, Albuquerque, NM (2004) Submitted for publication.
-
(2004)
Technical Report
-
-
Cong, G.1
Bader, D.2
-
12
-
-
24944530209
-
A comparison of the performance of list ranking and connected components algorithms on SMP and MTA shared-memory systems
-
Electrical and Computer Engineering Department, The University of New Mexico, Albuquerque, NM Submitted for publication
-
Bader, D., Cong, G., Feo, J.: A comparison of the performance of list ranking and connected components algorithms on SMP and MTA shared-memory systems. Technical report, Electrical and Computer Engineering Department, The University of New Mexico, Albuquerque, NM (2004) Submitted for publication.
-
(2004)
Technical Report
-
-
Bader, D.1
Cong, G.2
Feo, J.3
-
13
-
-
0023375195
-
The neighbor-joining method: A new method for reconstruction of phylogenetic trees
-
Saitou, N., Nei, M.: The neighbor-joining method: A new method for reconstruction of phylogenetic trees. Molecular Biological and Evolution 4 (1987) 406-425
-
(1987)
Molecular Biological and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
14
-
-
0001151063
-
The logical basis of phylogenetic analysis
-
Platnick, N., Funk, V., eds.: Columbia Univ. Press, New York
-
Farris, J.: The logical basis of phylogenetic analysis. In Platnick, N., Funk, V., eds.: Advances in Cladistics. Columbia Univ. Press, New York (1983) 1-36
-
(1983)
Advances in Cladistics
, pp. 1-36
-
-
Farris, J.1
-
15
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J.: Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17 (1981) 368-376
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
17
-
-
0035158540
-
Industrial applications of high-performance computing for phylogeny reconstruction
-
Siegel, H., ed.: Denver, CO, SPIE
-
Bader, D., Moret, B., Vawter, L.: Industrial applications of high-performance computing for phylogeny reconstruction. In Siegel, H., ed.: Proc. SPIE Commercial Applications for High-Performance Computing. Volume 4528., Denver, CO, SPIE (2001) 159-168
-
(2001)
Proc. SPIE Commercial Applications for High-performance Computing
, vol.4528
, pp. 159-168
-
-
Bader, D.1
Moret, B.2
Vawter, L.3
-
18
-
-
24944495133
-
High-performance algorithm engineering for gene-order phylogenies
-
Piscataway, NJ, Rutgers University
-
Bader, D., Moret, B.M., Warnow, T., Wyman, S., Yan, M.: High-performance algorithm engineering for gene-order phylogenies. In: DIMACS Workshop on Whole Genome Comparison, Piscataway, NJ, Rutgers University (2001)
-
(2001)
DIMACS Workshop on Whole Genome Comparison
-
-
Bader, D.1
Moret, B.M.2
Warnow, T.3
Wyman, S.4
Yan, M.5
-
19
-
-
0036568578
-
High-performance algorithm engineering for computational phylogenetics
-
Special issue on the best papers from ICCS'01
-
Moret, B., Bader, D., Warnow, T.: High-performance algorithm engineering for computational phylogenetics. J. Supercomputing 22 (2002) 99-111 Special issue on the best papers from ICCS'01.
-
(2002)
J. Supercomputing
, vol.22
, pp. 99-111
-
-
Moret, B.1
Bader, D.2
Warnow, T.3
-
20
-
-
0035234694
-
A new implementation and detailed study of breakpoint analysis
-
Hawaii
-
Moret, B., Wyman, S., Bader, D., Warnow, T., Yan, M.: A new implementation and detailed study of breakpoint analysis. In: Proc. 6th Pacific Symp. Biocomputing (PSB 2001), Hawaii (2001) 583-594
-
(2001)
Proc. 6th Pacific Symp. Biocomputing (PSB 2001)
, pp. 583-594
-
-
Moret, B.1
Wyman, S.2
Bader, D.3
Warnow, T.4
Yan, M.5
-
21
-
-
24944529395
-
GRAPPA: A high-performance computational tool for phylogeny reconstruction from gene-order data
-
Albuquerque, NM
-
Moret, B.M., Bader, D., Warnow, T., Wyman, S., Yan, M.: GRAPPA: a high-performance computational tool for phylogeny reconstruction from gene-order data. In: Proc. Botany, Albuquerque, NM (2001)
-
(2001)
Proc. Botany
-
-
Moret, B.M.1
Bader, D.2
Warnow, T.3
Wyman, S.4
Yan, M.5
-
22
-
-
24944514794
-
-
PhD thesis, Electrical and Computer Engineering Department, University of New Mexico, Albuquerque, NM
-
Yan, M.: High Performance Algorithms for Phylogeny Reconstruction with Maximum Parsimony. PhD thesis, Electrical and Computer Engineering Department, University of New Mexico, Albuquerque, NM (2004)
-
(2004)
High Performance Algorithms for Phylogeny Reconstruction with Maximum Parsimony
-
-
Yan, M.1
-
23
-
-
0034767147
-
A linear-time algorithm for computing inversion distance between signed permutations with an experimental study
-
Bader, D., Moret, B., Yan, M.: A linear-time algorithm for computing inversion distance between signed permutations with an experimental study. Journal of Computational Biology 8 (2001) 483-491
-
(2001)
Journal of Computational Biology
, vol.8
, pp. 483-491
-
-
Bader, D.1
Moret, B.2
Yan, M.3
|