Analysis of mono-ADP-ribosyltransferase 4 gene expression in human monocytes: Splicing pattern and potential regulatory elements

Biochimica et Biophysica Acta - Gene Structure and Expression

Volumn 1730, Issue 3, 2005, Pages 173-186

  Grahnert, Andreas ^a   Friedrich, Maik ^a   Engeland, Kurt ^a   Hauschildt, Sunna ^a  

^a UNIVERSITY OF LEIPZIG   (Germany)

Author keywords

3 UTR; 5 UTR; Hel cell; Inverse 5 RACE PCR; Mono ADP ribosyltransferase; Monocyte

Indexed keywords

ADENOSINE DIPHOSPHATE RIBOSE; ADENOSINE PHOSPHATE; GLYCOSYLPHOSPHATIDYLINOSITOL; MESSENGER RNA; NICOTINAMIDE ADENINE DINUCLEOTIDE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE; NICOTINAMIDE ADENINE DINUCLEOTIDE ADENOSINE DIPHOSPHATE RIBOSYLTRANSFERASE 4; PHOSPHATIDYLINOSITOL; PHOSPHOLIPASE C; UNCLASSIFIED DRUG; URIDINE PHOSPHATE;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; CATALYSIS; CELL ACTIVATION; CONTROLLED STUDY; EMBRYO; ENZYME ACTIVATION; ENZYME ACTIVITY; ERYTHROCYTE; EXON; FEMALE; FLUORESCENCE ACTIVATED CELL SORTING; GENE AMPLIFICATION; GENE CONTROL; GENE DELETION; GENE EXPRESSION; GENE MUTATION; GENE STRUCTURE; GENETIC ANALYSIS; GENETIC CODE; GENETIC TRANSFECTION; HUMAN; HUMAN CELL; INVERSE POLYMERASE CHAIN REACTION; MONOCYTE; MUTAGENESIS; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN SECRETION; PROTEIN TARGETING; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SPLICING; TRANSLATION INITIATION;

3' UNTRANSLATED REGIONS; 5' UNTRANSLATED REGIONS; ADP RIBOSE TRANSFERASES; ALTERNATIVE SPLICING; AMINO ACID MOTIFS; AMINO ACID SEQUENCE; AMINO ACID SUBSTITUTION; BASE SEQUENCE; CELL LINE; CELL LINE, TUMOR; CELLS, CULTURED; CLONING, MOLECULAR; CODON, INITIATOR; CODON, TERMINATOR; EXONS; FLUORESCEIN-5-ISOTHIOCYANATE; FLUORESCENT ANTIBODY TECHNIQUE, INDIRECT; FLUORESCENT DYES; GENE EXPRESSION; HUMANS; LEUKOCYTES, MONONUCLEAR; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; REGULATORY SEQUENCES, NUCLEIC ACID; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, MESSENGER; SEQUENCE HOMOLOGY, AMINO ACID; VALINE;

EID: 24944465020     PISSN: 01674781     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbaexp.2005.08.001     Document Type: Article

References (46)

1. I.J. Okazaki, and J. Moss Mono-ADP-ribosylation: a reversible posttranslational modification of proteins Adv. Pharmacol. 35 1996 247 280
2. K. Ueda, and O. Hayaishi ADP-ribosylation Annu. Rev. Biochem. 54 1985 73 100
3. J. Moss M. Vaughan ADP-Ribosylating Toxins and G Proteins: Insights Into Signal Transduction 1990 American Society for Microbiology Washington, DC
4. I.J. Okazaki, and J. Moss Glycosylphosphatidylinositol-anchored and secretory isoforms of mono-ADP-ribosyltransferases J. Biol. Chem. 273 1998 23617 23620
5. A. Zolkiewska, M.S. Nightingale, and J. Moss Molecular characterization of NAD:arginine ADP-ribosyltransferase from rabbit skeletal muscle Proc. Natl. Acad. Sci. U. S. A. 89 1992 11352 11356
6. G. Glowacki, R. Braren, K. Firner, M. Nissen, M. Kuhl, P. Reche, F. Bazan, M. Cetkovic-Cvrlje, E. Leiter, F. Haag, and F. Koch-Nolte The family of toxin-related ecto-ADP-ribosyltransferases in humans and the mouse Protein Sci. 11 2002 1657 1670
7. G. Glowacki, R. Braren, M. Cetkovic-Cvrlje, E.H. Leiter, F. Haag, and F. Koch-Nolte Structure, chromosomal localization, and expression of the gene for mouse ecto-mono(ADP-ribosyl)transferase ART5 Gene 275 2001 267 277
8. M. Seman, S. Adriouch, F. Haag, and F. Koch-Nolte Ecto-ADP- ribosyltransferases (ARTs): emerging actors in cell communication and signalling Curr. Med. Chem. 11 2004 857 872
9. F. Haag, F. Koch-Nolte, M. Kuhl, S. Lorenzen, and H.G. Thiele Premature stop codons inactivate the RT6 genes of the human and chimpanzee species J. Mol. Biol. 243 1994 537 546
10. B.A. Saxty, M. Yadollahi-Farsani, P.D. Upton, S.R. Johnstone, and J. MacDermot Inactivation of platelet-derived growth factor-BB following modification by ADP-ribosyltransferase Br. J. Pharmacol. 133 2001 1219 1226
11. G. Paone, A. Wada, L.A. Stevens, A. Matin, T. Hirayama, R.L. Levine, and J. Moss ADP ribosylation of human neutrophil peptide-1 regulates its biological properties Proc. Natl. Acad. Sci. U. S. A. 99 2002 8231 8235
12. A. Zolkiewska, and J. Moss Integrin α 7 as substrate for a glycosylphosphatidylinositol anchored ADP-ribosyltransferase on the surface of skeletal muscle cells J. Biol. Chem. 268 1993 25273 25276
13. A.N. Gubin, J.M. Njoroge, U. Wojda, S.D. Pack, M. Rios, M.E. Reid, and J.L. Miller Identification of the Dombrock blood group glycoprotein as a polymorphic member of the ADP-ribosyltransferase gene family Blood 96 2000 2621 2627
14. A. Grahnert, M. Friedrich, M. Pfister, F. Haag, F. Koch-Nolte, and S. Hauschildt Mono-ADP-ribosyltransferases in human monocytes: regulation by lipopolysaccharide Biochem. J. 15 2002 717 723
15. A.J. Ulmer, W. Scholz, M. Ernst, E. Brandt, and H.D. Flad Isolation and subfractionation of human peripheral blood mononuclear cells (PBMC) by density gradient centrifugation on Percoll Immunobiology 166 1984 238 250
16. E. Grage-Griebenow, D. Lorenzen, R. Fetting, H.D. Flad, and M. Ernst Phenotypical and functional characterization of Fc gamma receptor I (CD64)-negative monocytes, a minor human monocyte subpopulation with high accessory and antiviral activity Eur. J. Immunol. 23 1993 3126 3135
17. P. Mellon, V. Parker, Y. Gluzman, and T. Maniatis Identification of DNA sequences required for transcription of the human alpha 1-globin gene in a new SV40 host-vector system Cell 27 1981 279 288
18. M.A. Frohman, M.K. Dush, and G.R. Martin Rapid production of full-length cDNAs from rare transcripts: amplification using a single gene-specific oligonucleotide primer Proc. Natl. Acad. Sci. U. S. A. 85 1988 8998 9002
19. M. Friedrich, A. Grahnert, and S. Hauschildt Analysis of the 3′ UTR of the ART3 and ART4 gene by 3′ inverse RACE-PCR DNA Seq. 16 2005 53 57
20. K. Gebhardt, K. Ellerbrock, I. Pera, R. Ivell, and C. Kirchhoff Differential expression of novel abundant and highly regionalized mRNAs of the canine epididymis J. Reprod. Fertil. 116 1999 391 402
21. S.F. Altschul, W. Gish, W. Miller, E.W. Myers, and D.J. Lipman Basic local alignment search tool J. Mol. Biol. 215 1990 403 410
22. L. Florea, G. Hartzell, Z. Zhang, G.M. Rubin, and W. Miller A computer program for aligning a cDNA sequence with a genomic DNA sequence Genome Res. 8 1998 967 974
23. J.D. Thompson, D.G. Higgins, and T.J. Gibson CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22 1994 4673 4680
24. M.E. Reid The Dombrock blood group system: a review Transfusion 43 2003 107 114
25. a (abstract) Nature 206 1965 313
26. M. Kozak The scanning model for translation: an update J. Cell Biol. 108 1989 229 241
27. M. Kozak An analysis of vertebrate mRNA sequences: intimations of translational control J. Cell Biol. 115 1991 887 903
28. M. Kozak A consideration of alternative models for the initiation of translation in eukaryotes Crit. Rev. Biochem. Mol. Biol. 27 1992 385 402
29. C.Y. Chen, and A.B. Shyu AU-rich elements: characterization and importance in mRNA degradation Trends Biochem. 20 1995 465 470
30. S. Udenfriend, and K. Kodukula Prediction of omega site in nascent precursor of glycosylphosphatidylinositol protein Methods Enzymol. 250 1995 571 582
31. G. Bucht, P. Wikstrom, and K. Hjalmarsson Optimising the signal peptide for glycosyl phosphatidylinositol modification of human acetylcholinesterase using mutational analysis and peptide-quantitative structure-activity relationships Biochim. Biophys. Acta 1431 1999 471 482
32. G. Bucht, and K. Hjalmarsson Residues in Torpedo californica acetylcholinesterase necessary for processing to a glycosyl phosphatidylinositol-anchored form Biochim. Biophys. Acta 1292 1996 223 232
33. K.E. Coyne, A. Crisci, and D.M. Lublin Construction of synthetic signals for glycosyl-phosphatidylinositol anchor attachment. Analysis of amino acid sequence requirements for anchoring J. Biol. Chem. 268 1993 6689 6693
34. S. Udenfriend, and K. Kodukula How glycosylphosphatidyl-inositol-anchored membrane proteins are made Annu. Rev. Biochem. 64 1995 563 591
35. R. Micanovic, L.D. Gerber, J. Berger, K. Kodukula, and S. Udenfriend Selectivity of the cleavage/attachment site of phosphatidylinositol-glycan- anchored membrane proteins determined by site-specific mutagenesis at Asp-484 of placental alkaline phosphatase Proc. Natl. Acad. Sci. U. S. A. 87 1990 157 161
36. A.H. Futerman, M.G. Low, D.M. Michaelson, and I. Silman Solubilization of membrane-bound acetylcholinesterase by a phosphatidylinositol-specific phospholipase C J. Neurochem. 45 1985 1487 1494
37. M.G. Low, and J.B. Finean Non-lytic release of acetylcholinesterase from erythrocytes by a phosphatidylinositol-specific phospholipase C FEBS Lett. 82 1977 143 146
38. M.A. Davitz, M.G. Low, and V. Nussenzweig Release of decay-accelerating factor (DAF) from the cell membrane by phosphatidylinositol-specific phospholipase C (PIPLC). Selective modification of a complement regulatory protein J. Exp. Med. 163 1986 1150 1161
39. M.E. Medof, E.I. Walter, W.L. Roberts, R. Haas, and T.L. Rosenberry Decay accelerating factor of complement is anchored to cells by a C-terminal glycolipid Biochemistry 25 1986 6740 6747
40. W.L. Roberts, J.J. Myher, A. Kuksis, M.G. Low, and T.L. Rosenberry Lipid analysis of the glycoinositol phospholipids membrane anchor of human erythrocyte acetylcholinesterase J. Biol. Chem. 263 1988 18766 18775
41. M. Rios, K. Hue-Roye, J.R. Storry, T. Lee, J.L. Miller, and M.E. Reid Molecular basis of the Dombrock null phenotype Transfusion 41 2001 1405 1407
42. M. Rios, J.R. Storry, K. Hue-Roye, A. Chung, and M.E. Reid Two new molecular bases for the Dombrock null phenotype Br. J. Haematol. 117 2002 765 767
43. M. Kozak An analysis of 5′-noncoding sequences from 699 vertebrate messenger RNAs Nucleic Acids Res. 15 1987 8125 8148
44. B.A. Arrick, A.L. Lee, R.L. Grendell, and R. Derynck Inhibition of translation of transforming growth factor-beta 3 mRNA by its 5′ untranslated region Mol. Cell. Biol. 11 1991 4306 4313
45. B. Bates, J. Hardin, X. Zhan, K. Drickamer, and M. Goldfarb Biosynthesis of human fibroblast growth factor-5 Mol. Cell. Biol. 11 1991 1840 1845
46. A.E. Namen, S. Lupton, K. Hjerrild, J. Wignall, D.Y. Mochizuki, A. Schmierer, B. Mosley, C.J. March, D. Urdal, and S. Gillis Stimulation of B-cell progenitors by cloned murine interleukin-7 Nature 333 1988 571 573