-
1
-
-
0024290472
-
Amino acid preferences for specific locations at the ends of alpha helices
-
Richardson,J.S. and Richardson,D.C. (1988) Amino acid preferences for specific locations at the ends of alpha helices. Science, 240, 1648-1652.
-
(1988)
Science
, vol.240
, pp. 1648-1652
-
-
Richardson, J.S.1
Richardson, D.C.2
-
2
-
-
0032101291
-
Dissecting alpha-helices: Position-specific analysis of alpha-helices in globular proteins
-
Kumar,S. and Bansal,M. (1998) Dissecting alpha-helices: position-specific analysis of alpha-helices in globular proteins. Proteins, 31, 460-476.
-
(1998)
Proteins
, vol.31
, pp. 460-476
-
-
Kumar, S.1
Bansal, M.2
-
4
-
-
0037468399
-
Exceptional pairs of amino acid neighbors in alpha helices
-
Goliaei,B. and Minuchehr,Z. (2003) Exceptional pairs of amino acid neighbors in alpha helices. FEBS Lett., 537, 121-127.
-
(2003)
FEBS Lett.
, vol.537
, pp. 121-127
-
-
Goliaei, B.1
Minuchehr, Z.2
-
5
-
-
1842523274
-
Amino acid propensities are position-dependent throughout the length of alpha-helices
-
Engel,D.E. and DeGrado,W.F. (2004) Amino acid propensities are position-dependent throughout the length of alpha-helices. J. Mol. Biol., 337, 1195-1204.
-
(2004)
J. Mol. Biol.
, vol.337
, pp. 1195-1204
-
-
Engel, D.E.1
DeGrado, W.F.2
-
6
-
-
0024290488
-
Helix signals in proteins
-
Presta,L.G. and Rose,G.D. (1988) Helix signals in proteins. Science, 240, 1632-1641.
-
(1988)
Science
, vol.240
, pp. 1632-1641
-
-
Presta, L.G.1
Rose, G.D.2
-
7
-
-
0027207221
-
Comparison of three algorithms for the assignment of secondary structure in proteins: The advantages of a consensus assignment
-
Colloc'h,N., Etchebest,C., Thoreau,E., Henrissat,B. and Mornon,J.P. (1993) Comparison of three algorithms for the assignment of secondary structure in proteins: The advantages of a consensus assignment. Protein Eng., 6, 377-382.
-
(1993)
Protein Eng.
, vol.6
, pp. 377-382
-
-
Colloc'h, N.1
Etchebest, C.2
Thoreau, E.3
Henrissat, B.4
Mornon, J.P.5
-
8
-
-
2942541294
-
Use of a structural alphabet for analysis of short loops connecting repetitive structures
-
Fourrier,L., Benros,C. and de Brevern,A. (2004) Use of a structural alphabet for analysis of short loops connecting repetitive structures. Bioinformatics, 5, 58-71.
-
(2004)
Bioinformatics
, vol.5
, pp. 58-71
-
-
Fourrier, L.1
Benros, C.2
de Brevern, A.3
-
9
-
-
0036174712
-
Continuum secondary structure captures protein flexibility
-
Andersen,C.A., Palmer,A.G., Brunak,S. and Rost,B. (2002) Continuum secondary structure captures protein flexibility. Structure, 10, 175-184.
-
(2002)
Structure
, vol.10
, pp. 175-184
-
-
Andersen, C.A.1
Palmer, A.G.2
Brunak, S.3
Rost, B.4
-
10
-
-
0036129107
-
Probability-based protein secondary structure identification using combined NMR chemical-shift data
-
Wang,Y. and Jardetzky,O. (2002) Probability-based protein secondary structure identification using combined NMR chemical-shift data. Protein Sci., 11, 852-861.
-
(2002)
Protein Sci.
, vol.11
, pp. 852-861
-
-
Wang, Y.1
Jardetzky, O.2
-
11
-
-
21244473258
-
3(10)-helix adjoining alpha-helix and beta-strand: Sequence and structural features and their conservation
-
Pal,L., Dasgupta,B. and Chakrabarti,P. (2005) 3(10)-helix adjoining alpha-helix and beta-strand: Sequence and structural features and their conservation. Biopolymers, 78, 147-162.
-
(2005)
Biopolymers
, vol.78
, pp. 147-162
-
-
Pal, L.1
Dasgupta, B.2
Chakrabarti, P.3
-
12
-
-
0031660702
-
Geometrical and sequence characteristics of alpha-helices in globular proteins
-
Kumar,S. and Bansal,M. (1998) Geometrical and sequence characteristics of alpha-helices in globular proteins. Biophys. J., 75, 1935-1944.
-
(1998)
Biophys. J.
, vol.75
, pp. 1935-1944
-
-
Kumar, S.1
Bansal, M.2
-
13
-
-
1842532057
-
Exapanded turn conformations: Characterization and sequence-structure correspondence in α-turns with implications in helix folding
-
Dasgupta,B., Lipika,P., Basu,G. and Chakrabarti,P. (2004) Exapanded turn conformations: Characterization and sequence-structure correspondence in α-turns with implications in helix folding. Proteins, 55, 305-315.
-
(2004)
Proteins
, vol.55
, pp. 305-315
-
-
Dasgupta, B.1
Lipika, P.2
Basu, G.3
Chakrabarti, P.4
-
14
-
-
0035314041
-
Pex, analytical tools for pdb files. II. H-Pex: Noncanonical H-bonds in alpha-helices
-
Thomas,A., Benhabiles,N., Meurisse,R., Ngwabije,R. and Brasseur,R. (2001) Pex, analytical tools for pdb files. II. H-Pex: Noncanonical H-bonds in alpha-helices. Proteins, 43, 37-44.
-
(2001)
Proteins
, vol.43
, pp. 37-44
-
-
Thomas, A.1
Benhabiles, N.2
Meurisse, R.3
Ngwabije, R.4
Brasseur, R.5
-
15
-
-
0033994775
-
HELANAL: A program to characterize helix geometry in proteins
-
Bansal,M., Kumar,S. and Velavan,R. (2000) HELANAL: A program to characterize helix geometry in proteins. J. Biomol. Struct. Dyn., 17, 811-819.
-
(2000)
J. Biomol. Struct. Dyn.
, vol.17
, pp. 811-819
-
-
Bansal, M.1
Kumar, S.2
Velavan, R.3
-
16
-
-
18044400433
-
MMDB: Entrez's 3D-structure database
-
Wang,Y., Anderson,J.B., Chen,J., Geer,L.Y., He,S., Hurwitz,D.I., Liebert,C.A., Madej,T., Marchler,G.H., Marchler-Bauer,A. et al. (2002) MMDB: Entrez's 3D-structure database. Nucleic Acids Res., 30, 1249-1252.
-
(2002)
Nucleic Acids Res.
, vol.30
, pp. 1249-1252
-
-
Wang, Y.1
Anderson, J.B.2
Chen, J.3
Geer, L.Y.4
He, S.5
Hurwitz, D.I.6
Liebert, C.A.7
Madej, T.8
Marchler, G.H.9
Marchler-Bauer, A.10
-
17
-
-
17144425763
-
Practical lessons from protein structure prediction
-
Ginalski,K., Grishin,N.V., Godzik,A. and Rychlewski,L. (2005) Practical lessons from protein structure prediction. Nucleic Acids Res., 33, 1874-1891.
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 1874-1891
-
-
Ginalski, K.1
Grishin, N.V.2
Godzik, A.3
Rychlewski, L.4
-
18
-
-
0036616218
-
The protein data bank
-
Berman,H., Battistuz,T., Bhat,T., Bluhm,W., Bourne,P., Burkhardt,K., Feng,Z., Gilliland,G., Iype,L., Jain,S. et al. (2002) The protein data bank. Acta Crystallogr. D Biol. Crystallogr., D58, 899-907.
-
(2002)
Acta Crystallogr. D Biol. Crystallogr.
, vol.D58
, pp. 899-907
-
-
Berman, H.1
Battistuz, T.2
Bhat, T.3
Bluhm, W.4
Bourne, P.5
Burkhardt, K.6
Feng, Z.7
Gilliland, G.8
Iype, L.9
Jain, S.10
-
19
-
-
0024316598
-
PKB: A program system and data base for analysis of protein structure
-
Bryant,S.H. (1989) PKB: A program system and data base for analysis of protein structure. Proteins, 5, 233-247.
-
(1989)
Proteins
, vol.5
, pp. 233-247
-
-
Bryant, S.H.1
-
20
-
-
0034628901
-
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
-
Hughes,J., Estep,P., Tavazoie,S. and Church,G. (2000) Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. J. Mol. Biol., 296, 1205-1214.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 1205-1214
-
-
Hughes, J.1
Estep, P.2
Tavazoie, S.3
Church, G.4
-
21
-
-
0033691588
-
On approximation algorithms for local multiple alignment
-
Tokyo, Japan
-
Akutsu,T., Arimura,H. and Shimozono,S. (2000) On approximation algorithms for local multiple alignment. Proceedings of the Fourth Annual International Conference on Computational Molecular Biology, Tokyo, Japan, pp. 1-7.
-
(2000)
Proceedings of the Fourth Annual International Conference on Computational Molecular Biology
, pp. 1-7
-
-
Akutsu, T.1
Arimura, H.2
Shimozono, S.3
-
22
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
Lawrence,C.E., Altschul,S.F., Boguski,M.S., Liu,J.S., Neuwald,A.F. and Wootton,J.C. (1993) Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment. Science, 262, 208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wootton, J.C.6
-
23
-
-
0029144601
-
Gibbs motif sampling: Detection of bacterial outer membrane protein repeats
-
Neuwald,A.F., Liu,J.S. and Lawrence,C.E. (1995) Gibbs motif sampling: detection of bacterial outer membrane protein repeats. Protein Sci., 4, 3836-3845.
-
(1995)
Protein Sci.
, vol.4
, pp. 3836-3845
-
-
Neuwald, A.F.1
Liu, J.S.2
Lawrence, C.E.3
-
24
-
-
0037627753
-
Identifying residue-residue clashes in protein hybrids by using second-order mean-field approach
-
Moore,G.L. and Maranas,C.D. (2003) Identifying residue-residue clashes in protein hybrids by using second-order mean-field approach. Proc. Natl Acad. Sci. USA, 100, 5091-5096.
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 5091-5096
-
-
Moore, G.L.1
Maranas, C.D.2
-
25
-
-
0035878724
-
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
-
Schäffer,A.A., Aravind,L., Madden,T.L., Shavirin,S., Spouge,J.L., Wolf,Y.I., Koonin,E.V. and Altschul,S.F. (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res., 29, 2994-3005.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2994-3005
-
-
Schäffer, A.A.1
Aravind, L.2
Madden, T.L.3
Shavirin, S.4
Spouge, J.L.5
Wolf, Y.I.6
Koonin, E.V.7
Altschul, S.F.8
-
26
-
-
0142179047
-
Revisiting the Ramachandran plot: Hard-sphere repulsion, electrostatics, and H-bonding in the α-helix
-
Ho,B.K., Thomas,A. and Brasseur,R. (2003) Revisiting the Ramachandran plot: Hard-sphere repulsion, electrostatics, and H-bonding in the α-helix. Protein Sci., 12, 2508-2522.
-
(2003)
Protein Sci.
, vol.12
, pp. 2508-2522
-
-
Ho, B.K.1
Thomas, A.2
Brasseur, R.3
-
27
-
-
0034047548
-
Bayesian segmentation of protein secondary structure
-
Schmidler,S.C., Liu,J.S. and Brutlag,D.L. (2000) Bayesian segmentation of protein secondary structure. J. Comput. Biol., 7, 233-248.
-
(2000)
J. Comput. Biol.
, vol.7
, pp. 233-248
-
-
Schmidler, S.C.1
Liu, J.S.2
Brutlag, D.L.3
|