HELANAL: A Program to Characterize Helix Geometry in Proteins

Journal of Biomolecular Structure and Dynamics

Volumn 17, Issue 5, 2000, Pages 811-819

  Bansal, Manju ^a   Kumart, Sandeep ^a   Velavan, R ^a  

^a INDIAN INSTITUTE OF SCIENCE   (India)

Author keywords

[No Author keywords available]

Indexed keywords

GLOBULAR PROTEIN; HELIX LOOP HELIX PROTEIN;

ALGORITHM; ALPHA HELIX; ARTICLE; COMPUTER PROGRAM; CORRELATION FUNCTION; CURVE FITTING; GEOMETRY; PRIORITY JOURNAL; PROTEIN SECONDARY STRUCTURE; STEREOCHEMISTRY;

EID: 0033994775     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2000.10506570     Document Type: Article

References (24)

1. Pauling, L., Corey, R. B., and Branson, H. R., 1951. Proc. Nat. Acad. Sci., U.S.A., 37:205–211.
2. Kendrew, J. C., Bodo, G., Dintzis, H. M., Parrish, R. G., Wycoff, H., and Philips, D. C., 1958. Nature, 181:662–666.
3. Love, W. F., Klock, P. A., Lattman, E. E., Padhan, E. A., Ward, K. B.J., and Hendrickson, W. A., 1971. Cold Spring Harbor Symp. Quan. Biol., 36:349–357.
4. Barlow, D., and Thornton, J. M., 1988. J. Mol. Biol., 201:601–619.
5. Blundell, T. L., Barlow, D., Barkakoti, N., and Thornton, J. M., 1983. Nature, 306:281–283.
6. Chakarabarti, P., Bernard, M., and Rees, D. C., 1986. Biopolymers, 25:1087–1093.
7. MacArthur, W. M., and Thornton, J. M., 1996. J. Mol. Biol., 264:1180–1195.
8. Richards, F. M., and Kundrot, C. E., 1980. Proteins, 3:71–84.
9. Bernstein, F. C., Koetzle, T. F., Williams, G. J.B., Meyer, E. F., Jr., Brice, M. D., Rodgers, J. R., Kennard, O., Shimanouchi, T., and Tasumi, M., 1977. J. Mol. Biol., 112:535–542.
10. Hobohm, U., and Sander, C., 1994. Protein Sci., 3:522–524.
11. Kumar, S., and Bansal, M., 1996. Biophys. J., 71:1574–1586.
12. Kumar, S., and Bansal, M., 1998. Biophys. J., 75:1935–1944.
13. Sugeta, H., and Miyazawa, T., 1967. Biopolymers, 5:673–679.
14. Kabsch, W., and Sander, C., 1983. Biopolymers, 22:2577–2637.
15. Ramcahandran, G. N., and Sasisekaran, V., 1968. Adv. Prot. Chem., 23:283–437.
16. IUPAC—IUB commission on Biochemical Nomenclature. 1970. J. Biol. Chem., 245:6489–6497. Abbreviations and symbols for the description of the conformation of polypeptide chain. Tentative rules
17. Aurora, R., and Rose, G. D., 1998. Protein Sci., 7:21–38.
18. Levitt, M., and Greer, J., 1977. J. Mol. Biol., 114:181–239.
19. Richardson, J. S., and Richardson, D. C., 1988. Science, 240:1648–1652.
20. Oldfield, T. J., and Hubbard, R. E., 1994. Proteins:Struct. Funct. Genet., 18:324–337.
21. Parry, D. A.D., and Suzuki, E., 1969. Biopolymers, 7:189–197.
22. O'Shea, E. K., Klemm, J. D., Kim, P. S., and Alber, T., 1991. Science, 254:539–544.
23. Kraulis, P. J., 1991. J. Appl. Crystallogr., 24:946–950.
24. Kumar, S., and Bansal, M., 1998. Proteins:Struct. Funct. and Genet., 31:460–476.