Genetic features of Khoton Mongolians revealed by SNP analysis of the X chromosome

Gene

Volumn 357, Issue 2, 2005, Pages 95-102

  Katoh, Toru ^a   Mano, Shuhei ^a   Munkhbat, Batmunkh ^a,b   Tounai, Kenichi ^a   Oyungerel, Ganjuur ^b   Chae, Gue Tae ^c   Han, Hoon ^c   Jia, Guan Jun ^d   Tokunaga, Katsushi ^e   Munkhtuvshin, Namid ^b   Tamiya, Gen ^a   Inoko, Hidetoshi ^a  

^a TOKAI UNIVERSITY   (Japan)

^b INSTITUTE OF MEDICINE   (United States)

^c The Catholic University of Korea   (South Korea)

^d Harbin Red Cross Blood Center   (China)

^e UNIVERSITY OF TOKYO   (Japan)

Author keywords

Mongolian; Population structure; SNP haplotype; TaqMan assay; X chromosome

Indexed keywords

ANTHROPOLOGY; ARTICLE; CHROMOSOME 13Q; CHROMOSOME ANALYSIS; GENE FREQUENCY; GENETIC TRAIT; HAPLOTYPE; HISTORY; HUMAN; HYPOTHESIS; MALE; MONGOLIA; MONGOLOID RACE; NORMAL HUMAN; NUCLEOTIDE SEQUENCE; POPULATION; POPULATION GENETICS; PRINCIPAL COMPONENT ANALYSIS; PRIORITY JOURNAL; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURE ANALYSIS; TURKEY (REPUBLIC); X CHROMOSOME; Y CHROMOSOME;

ALLELES; ASIAN CONTINENTAL ANCESTRY GROUP; CHROMOSOMES, HUMAN, X; CHROMOSOMES, HUMAN, Y; GENE FREQUENCY; GENETICS, POPULATION; HAPLOTYPES; HUMANS; MONGOLIA; POLYMORPHISM, SINGLE NUCLEOTIDE; RECOMBINATION, GENETIC;

EID: 24744437127     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2005.06.029     Document Type: Article

References (28)

1. P. Awadalla, A. Eyre-Walker, and J.M. Smith Linkage disequilibrium and recombination in hominid mitochondrial DNA Science 286 1999 2524 2525
2. H.J. Bandelt, P. Forster, and A. Röhl Median-joining networks for inferring intraspecific phylogenies Mol. Biol. Evol. 16 1999 37 48
3. J. Batsuuri Anthropological characteristics of the ethnic group Khoton Proceedings of the Institute of General and Experimental Biology Mongolian Academy of Sciences, Ulaanbaatar, Mongolia vol. 12 1977 111 127
4. N.O. Chimge, and J. Batsuuri Interethnic genetic differentiation: HLA class I antigens in the population of Mongolia Am. J. Human Biol. 11 1999 603 618
5. D. Falush, M. Stephens, and J.K. Pritchard Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies Genetics 164 2003 1567 1587
6. J. Felsenstein Confidence limits on phylogenies: an approach using the bootstrap Evolution 39 1985 783 791
7. W.G. Hiill, and A. Robartson Linkage disequilibrium in finite populations Theor. Appl. Genet. 38 1968 226 231
8. H. Kaessmann, and S. Pääbo The genetical history of humans and the great apes J. Intern. Med. 251 2002 1 18
9. H. Kaessmann, F. Heissig, A. von Haeseler, and S. Pääbo DNA sequence variation in a non-coding region of low recombination on the human X chromosome Nat. Genet. 22 1999 78 81
10. T. Katoh Genetic isolates in East Asia: a study of linkage disequilibrium in the X chromosome Am. J. Hum. Genet. 71 2002 395 400
11. T. Katoh Genetic features of Mongolian ethnic groups revealed by Y-chromosomal analysis Gene 346 2005 63 70
12. C.J. Kolman, N. Sambuughin, and E. Bermingham Mitochondrial DNA analysis of Mongolian populations and implications for the origin of New World founders Genetics 142 1996 1321 1334
13. M. Laan, V. Wiebe, E. Khusnutdinova, M. Remm, and S. Pääbo X-chromosome as a marker for population history: linkage disequilibrium and haplotype study in Eurasian populations Eur. J. Hum. Genet. 13 2005 452 462
14. R.C. Lewontin The interaction of selection and linkage. Ii. Optimum Models Genetics 50 1964 757 782
15. K.J. Livak Allelic discrimination using fluorogenic probes and the 5′ nuclease assay Genet. Anal. 14 1999 143 149
16. G. McVean LDhat: a Package for the Population Genetic Analysis of Recombination 2004 Department of Statistics Oxford, UK OX1, 3TG
17. B. Munkhbat Molecular analysis of HLA polymorphism in Khoton-Mongolians Tissue Antigens 50 1997 124 134
18. R. Nagaraja X chromosome map at 75-kb STS resolution, revealing extremes of recombination and GC content Genome Res. 7 1997 210 222
19. M. Nei Molecular Evolutionary Genetics 1987 Columbia University Press New York
20. M. Nei, F. Tajima, and Y. Tateno Accuracy of estimated phylogenetic trees from molecular data. II. Gene frequency data J. Mol. Evol. 19 1983 153 170
21. K. Nyambuu Introduction to the Ethnography of Mongolia 1992 Mongolian State Press Ulaanbaatar, Mongolia
22. A. Ogawa Diversity of HLA-B61 alleles and haplotypes in East Asians and Spanish Gypsies Tissue Antigens 51 1998 356 366
23. T. Ota DISPAN: Genetic and Phylogeny Analysis 1993 Pennsylvania State University University Park, PA
24. J.K. Pritchard, M. Stephens, and P. Donnelly Inference of population structure using multilocus genotype data Genetics 155 2000 945 959
25. J. Rozas, and R. Rozas DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis Bioinformatics 15 1999 174 175
26. N. Saitou, and M. Nei The neighbor-joining method: a new method for reconstructing phylogenetic trees Mol. Biol. Evol. 4 1987 406 425
27. Schneider, S, Roessli D, Excoffier, L., 2000. Arlequin: A software for population genetics data analysis. Ver 2.000. Genetics and Biometry Lab, Dept. of Anthropology, University of Geneva.
28. H. Tanaka Distribution of HLA-A-B-DRB1 haplotypes in five ethnic groups in North-east Asia D. Charron Genetic diversity of HLA: Functional and Medical Implications vol. 2 1997 EDK Paris 183 184