Modelling a protein structure comparison application on the Grid using PROTEUS

Lecture Notes in Computer Science

Volumn 3458, Issue , 2005, Pages 75-85

  Cannataro, Mario ^a   Comin, Matteo ^b   Ferrari, Carlo ^b   Guerra, Concettina ^b   Guzzo, Antonella ^c   Veltri, Pierangelo ^a  

^a UNIVERSITY MAGNA GRAECIA OF CATANZARO   (Italy)

^b UNIVERSITY OF PADOVA   (Italy)

^c UNIVERSITY OF CALABRIA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL METHODS; COMPUTER SIMULATION; INFORMATION ANALYSIS; PROBLEM SOLVING; PROTEINS; SEMANTICS;

BIOINFORMATICS; BIOLOGICAL DATA; PROTEIN STRUCTURE; PROTEUS SYSTEM;

DATABASE SYSTEMS;

EID: 24644519510     PISSN: 03029743     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1007/11423287_7     Document Type: Conference Paper

References (12)

1. P. Baldi and S. Brunak. Bioinformatics: The Machine Learning Approach. MIT Press, 2001.
2. M. Cannataro, C. Comito, F. Lo Schiavo, and P. Veltri. Proteus, a grid-based problem solving environment for bioinformatics: Architecture and experiments. IEEE Computational Intelligence Bulletin, 3(1):7-18, February 2004.
3. M. Cannataro and D. Talia. Semantic and Knowledge Grids: Building the Next-Generation Grid. IEEE Intelligent Systems, 19(1):56-63, January-February 2004.
4. M. Comin, C. Guerra, and G. Zanotti. PROuST: A comparison method of three-dimensional structures of proteins using indexing techniques. J. of Computational Biology, 11:1061-1072, 2004.
5. Marlon Dumas and Arthur H. M. ter Hofstede. UML Activity Diagrams as a Workflow Specification Language. UML01, Lecture Notes in Computer Science, 2185, 2001.
6. C. Ferrari, C. Guerra, and G. Zanotti. A grid-aware approach to protein structure comparison. Jounal of. Parallel and Distributed Computing Special issue on High Performance Bionformatics, 63, 2003.
7. NCBI-National Cancer for Biotechnology Information. Genbank dna sequences. http://www.ncbi.nlm.nih.gov/.
8. Research Collaboratory for Structural Bioinformatics (RCSB). The protein data bank, www.rcsb.org/pdb.
9. Global Grid Forum. Life science grid - research group. http://www.ggf.org/7_APM/LSG_b.htm.
10. I. Foster and C. Kesselman. The Grid: Blueprint for a Future Computing Infrastructure. Morgan Kaufmann Publishers, 1999.
11. C. Guerra and S. Istrail. Mathematical Methods for Protein Structure Analysis and Design. LNBI, Springer, 2000.
12. University of Manchester. Mygrid. http://mygrid.man.ac.uk/.