-
1
-
-
0004246255
-
-
Benjamin/Cummings, San Francisco CA
-
Watson, J. D. Hopkins, N. H., Roberts, J. W., Steiz, J. A., and Weiner, A. M. (1987) Molecular Biology of the Gene, 4th ed., Benjamin/Cummings, San Francisco CA.
-
(1987)
Molecular Biology of the Gene, 4th Ed.
-
-
Watson, J.D.1
Hopkins, N.H.2
Roberts, J.W.3
Steiz, J.A.4
Weiner, A.M.5
-
2
-
-
0035895505
-
The sequence of the human genome
-
Venter, J. C., Adams. M. D., Myers, E. W. et al. (2001) The sequence of the human genome. Science 291, 1304-1351.
-
(2001)
Science
, vol.291
, pp. 1304-1351
-
-
Venter, J.C.1
Adams, M.D.2
Myers, E.W.3
-
3
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
Lander, E. S., Linton, L. M., Birren, B., et. al. (2001) Initial sequencing and analysis of the human genome. Nature 409, 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
Lander, E.S.1
Linton, L.M.2
Birren, B.3
-
4
-
-
0023056832
-
Translational regulation of expression of the bacteriophage T4 lysozyme gene
-
McPheeters, D. S., Christensen, A., Young, E. T., Stormo, G., and Gold, L. (1986) Translational regulation of expression of the bacteriophage T4 lysozyme gene. Nucleic Acids Res. 14, 5813-5826.
-
(1986)
Nucleic Acids Res.
, vol.14
, pp. 5813-5826
-
-
McPheeters, D.S.1
Christensen, A.2
Young, E.T.3
Stormo, G.4
Gold, L.5
-
5
-
-
24644497976
-
Shotgun sequencing of the human genome
-
Venter, J. C., Adams, M. D., Sutton, G. G., Kerlavage, A. R., Smith, H. O., and Humkapiller, M. (1998) Shotgun sequencing of the human genome. Science 278, 1547-1551.
-
(1998)
Science
, vol.278
, pp. 1547-1551
-
-
Venter, J.C.1
Adams, M.D.2
Sutton, G.G.3
Kerlavage, A.R.4
Smith, H.O.5
Humkapiller, M.6
-
6
-
-
0037007087
-
On the sequencing and assembly of the human genome
-
Myers, E. W., Sutton, G. G., Smith, H. O., Adams, M. D., and Venter, J. C. (2002) On the sequencing and assembly of the human genome. PNAS 99, 4145-4146.
-
(2002)
PNAS
, vol.99
, pp. 4145-4146
-
-
Myers, E.W.1
Sutton, G.G.2
Smith, H.O.3
Adams, M.D.4
Venter, J.C.5
-
7
-
-
0030950735
-
Human whole-genome shotgun sequencing
-
Weber, J. L. and Myers, E. W. (1997) Human whole-genome shotgun sequencing. Genome Res. 7, 401-409.
-
(1997)
Genome Res.
, vol.7
, pp. 401-409
-
-
Weber, J.L.1
Myers, E.W.2
-
8
-
-
0037133648
-
On the sequencing of the human genome
-
Waterston, R. H., Lander, E. S., and Sulston, J. E. (2002) On the sequencing of the human genome. PNAS 99, 3712-3716.
-
(2002)
PNAS
, vol.99
, pp. 3712-3716
-
-
Waterston, R.H.1
Lander, E.S.2
Sulston, J.E.3
-
9
-
-
0030972827
-
Against a whole-genome shotgun
-
Green, P. (1997) Against a whole-genome shotgun. Genome Res. 7, 410-417.
-
(1997)
Genome Res.
, vol.7
, pp. 410-417
-
-
Green, P.1
-
10
-
-
0037007013
-
Whole-genome disassembly
-
Green, P. (2002) Whole-genome disassembly. PNAS 99, 4143-4144.
-
(2002)
PNAS
, vol.99
, pp. 4143-4144
-
-
Green, P.1
-
11
-
-
0034257930
-
Phylogenetic study of the spatial distribution of protein-coding and control segments in DNA chains
-
Oiwa, N. N. and Goldman, C. (2000) Phylogenetic study of the spatial distribution of protein-coding and control segments in DNA chains. Phys. Rev. Lett. 85, 2396-2399.
-
(2000)
Phys. Rev. Lett.
, vol.85
, pp. 2396-2399
-
-
Oiwa, N.N.1
Goldman, C.2
-
15
-
-
0041457581
-
Wavelet based fractal analysis of DNA sequences
-
Arnéodo, A., d'Aubenton-Carafa, Y., Bacry, E., Graves, P. V., Muzy, J. F., and Thermes, C. (1996) Wavelet based fractal analysis of DNA sequences. Physica D 96, 291-320.
-
(1996)
Physica D
, vol.96
, pp. 291-320
-
-
Arnéodo, A.1
D'Aubenton-Carafa, Y.2
Bacry, E.3
Graves, P.V.4
Muzy, J.F.5
Thermes, C.6
-
16
-
-
0027121482
-
Fractal landscape analysis of DNA walks
-
Peng, C.-K., Buldyrev, S. V., Goldberger, A. L., et al. (1992) Fractal landscape analysis of DNA walks. Physica A 191, 25-29.
-
(1992)
Physica A
, vol.191
, pp. 25-29
-
-
Peng, C.-K.1
Buldyrev, S.V.2
Goldberger, A.L.3
-
17
-
-
0026585152
-
Long-range correlations in nucleotide sequences
-
Peng, C.-K., Buldyrev, S. V., Goldberger, A. L., et al. (1992) Long-range correlations in nucleotide sequences, Nature 356, 168-170.
-
(1992)
Nature
, vol.356
, pp. 168-170
-
-
Peng, C.-K.1
Buldyrev, S.V.2
Goldberger, A.L.3
-
18
-
-
0027136157
-
Fractal landscapes and molecular evolution: Modeling the myosin heavy chain gene family
-
Buldyrev, S. V., Goldberger, A. L., Havlin, S., et al. (1993) Fractal landscapes and molecular evolution: modeling the myosin heavy chain gene family., Biophys. J. 65, 2673-2679.
-
(1993)
Biophys. J.
, vol.65
, pp. 2673-2679
-
-
Buldyrev, S.V.1
Goldberger, A.L.2
Havlin, S.3
-
19
-
-
0027621772
-
Generalized Lévy-walk model for DNA nucleotide sequences
-
Buldyrev, S. V., Goldberger, A. L., Havlin, S., Peng, C.-K., Simons, M., and Stanley, H. E. (1993) Generalized Lévy-walk model for DNA nucleotide sequences. Phys. Rev. E 47, 4514.
-
(1993)
Phys. Rev. E
, vol.47
, pp. 4514
-
-
Buldyrev, S.V.1
Goldberger, A.L.2
Havlin, S.3
Peng, C.-K.4
Simons, M.5
Stanley, H.E.6
-
20
-
-
0000428193
-
Global fractal dimension of human DNA sequences treated as pseudorandom walks
-
Berthelsen, C. L., Glazier J. A., and Skolnick, M. H. (1992) Global fractal dimension of human DNA sequences treated as pseudorandom walks. Phys. Rev. A 45, 8902-8913.
-
(1992)
Phys. Rev. A
, vol.45
, pp. 8902-8913
-
-
Berthelsen, C.L.1
Glazier, J.A.2
Skolnick, M.H.3
-
21
-
-
0000375133
-
Effective multifractal spectrum of a random walk
-
Berthelsen, C. L., Glazier J. A., and Raghavachari, S. (1994) Effective multifractal spectrum of a random walk. Phys. Rev. E 49, 1860-1864.
-
(1994)
Phys. Rev. E
, vol.49
, pp. 1860-1864
-
-
Berthelsen, C.L.1
Glazier, J.A.2
Raghavachari, S.3
-
22
-
-
0001180688
-
Reconstructing phylogeny from the multifractal spectrum of mitochondrial DNA
-
Glazier, J. A., Raghavachari, S., Berthelsen, C. L., and Skolnick, M. H. (1995) Reconstructing phylogeny from the multifractal spectrum of mitochondrial DNA. Phys. Rev. E 51, 2665-2668.
-
(1995)
Phys. Rev. E
, vol.51
, pp. 2665-2668
-
-
Glazier, J.A.1
Raghavachari, S.2
Berthelsen, C.L.3
Skolnick, M.H.4
-
23
-
-
24644515199
-
Scale-invariant spatial patterns in genome organization
-
Purugganan, M. D. (1993) Scale-invariant spatial patterns in genome organization. Phys. Lett. A 175, 252-256.
-
(1993)
Phys. Lett. A
, vol.175
, pp. 252-256
-
-
Purugganan, M.D.1
-
24
-
-
0000794252
-
A moving-box algorithm to estimate generalized dimensions and the f(α) spectrum
-
Oiwa, N. N. and Fiedler-Ferrara, N. (1998) A moving-box algorithm to estimate generalized dimensions and the f(α) spectrum. Physica D 124, 210-224.
-
(1998)
Physica D
, vol.124
, pp. 210-224
-
-
Oiwa, N.N.1
Fiedler-Ferrara, N.2
-
25
-
-
0036679807
-
The fractal structure of the mitochondrial genomes
-
Oiwa, N. N. and Glazier, J. A. (2002) The fractal structure of the mitochondrial genomes. Physica A 311, 221-230.
-
(2002)
Physica A
, vol.311
, pp. 221-230
-
-
Oiwa, N.N.1
Glazier, J.A.2
-
26
-
-
0033976454
-
GenBank
-
Benson, D. A, Karsch-Mizrachi, I., Lipman, D. J., Ostell, J., Rapp, B. A., and Wheeler, D. L. (2000) GenBank. Nucleic Acids Res. 28, 15-18.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 15-18
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Rapp, B.A.5
Wheeler, D.L.6
-
27
-
-
0021770785
-
On the evolutionary descent of organisms and organelles: A global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA
-
Gray, M. W., Sankoff, D., and Cedergreen, R. J. (1984) On the evolutionary descent of organisms and organelles: a global phylogeny based on a highly conserved structural core in small subunit ribosomal RNA. Nucleic Acids Res. 12, 5837-5852.
-
(1984)
Nucleic Acids Res.
, vol.12
, pp. 5837-5852
-
-
Gray, M.W.1
Sankoff, D.2
Cedergreen, R.J.3
-
28
-
-
0031298464
-
The study of correlation structures of DNA sequences: A critical review
-
Li, W. (1997) The study of correlation structures of DNA sequences: a critical review. Computers Chem. 21, 257-271.
-
(1997)
Computers Chem.
, vol.21
, pp. 257-271
-
-
Li, W.1
-
30
-
-
0042643571
-
-
Wiley, New York
-
Baxevanis, A. D. and Ouellete, B. F. F., eds. (2001) Bioinformatics, 2nd ed., Wiley, New York.
-
(2001)
Bioinformatics, 2nd Ed.
-
-
Baxevanis, A.D.1
Ouellete, B.F.F.2
-
31
-
-
0031715499
-
LIGAND: Chemical Database for Enzyme Reactions
-
Goto, S., Nishioka, T., and Kanehisa, M., (1998) LIGAND: Chemical Database for Enzyme Reactions. Bioinformatics 14, 591-599.
-
(1998)
Bioinformatics
, vol.14
, pp. 591-599
-
-
Goto, S.1
Nishioka, T.2
Kanehisa, M.3
-
32
-
-
0035135420
-
Regulatory element detection using correlation with expression
-
Bussemaker, H. J., Li, H., and Siggia, E. D. (2001) Regulatory element detection using correlation with expression. Nature Genet. 27, 167-171.
-
(2001)
Nature Genet.
, vol.27
, pp. 167-171
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
33
-
-
0034730161
-
Bidding a dictionary for genomes: Identification of presumptive regulatory sites by statistical analysis
-
Bussemaker, H. J., Li, H., and Siggia, E. D. (2000) Bidding a dictionary for genomes: identification of presumptive regulatory sites by statistical analysis. PNAS 97, 10,096-10,100.
-
(2000)
PNAS
, vol.97
-
-
Bussemaker, H.J.1
Li, H.2
Siggia, E.D.3
-
34
-
-
0034190318
-
Fractals related to long DNA sequences and complete genomes
-
B.-L. Hao, - Lee, H. C., and Zhang, S.-Y. (2000) Fractals related to long DNA sequences and complete genomes. Chaos Solitons Fractals 11, 825;
-
(2000)
Chaos Solitons Fractals
, vol.11
, pp. 825
-
-
Hao, B.-L.1
Lee, H.C.2
Zhang, S.-Y.3
-
35
-
-
0034325717
-
Dimensions of fractals related to languages defined by tagged strings in complete genomes
-
Yu, Z.-G., Hao, B. L., Xie, H. M., and Chen, G. Y. (2000) Dimensions of fractals related to languages defined by tagged strings in complete genomes. Chaos Solitons Fractals 11, 2215.
-
(2000)
Chaos Solitons Fractals
, vol.11
, pp. 2215
-
-
Yu, Z.-G.1
Hao, B.L.2
Xie, H.M.3
Chen, G.Y.4
-
36
-
-
0345982307
-
Optimization of gene sequences under constant mutational pressure and selection
-
Kolwalczuk, M., Gierlik, A., Mackiewicz, P., Cebrat, S., and Dudek, M. R. (1999) Optimization of gene sequences under constant mutational pressure and selection. Physica A 273, 116.
-
(1999)
Physica A
, vol.273
, pp. 116
-
-
Kolwalczuk, M.1
Gierlik, A.2
Mackiewicz, P.3
Cebrat, S.4
Dudek, M.R.5
-
37
-
-
0028765892
-
Linguistic features of noncoding DNA sequences
-
Mantegna, R. N., Buldyrev, S. V., Goldberger, A. L., et al. (1994) Linguistic features of noncoding DNA sequences. Phys. Rev. Lett. 73, 3169-3172;
-
(1994)
Phys. Rev. Lett.
, vol.73
, pp. 3169-3172
-
-
Mantegna, R.N.1
Buldyrev, S.V.2
Goldberger, A.L.3
-
38
-
-
33748681503
-
Systematic analysis of coding and noncoding DNA sequences using methods of statistical linguistics
-
Mantegna, R. N., Buldyrev, S. V., Goldberger, A. L. et al. (1995) Systematic analysis of coding and noncoding DNA sequences using methods of statistical linguistics. Phys. Rev. E 52, 2939-2950;
-
(1995)
Phys. Rev. E
, vol.52
, pp. 2939-2950
-
-
Mantegna, R.N.1
Buldyrev, S.V.2
Goldberger, A.L.3
-
39
-
-
26744440625
-
Reply
-
Mantegna, R. N., Bulyrev, S. V., Goldberger, A. L. et al.(1996) Reply. Phys. Rev. Lett. 76, 1979-1981.
-
(1996)
Phys. Rev. Lett.
, vol.76
, pp. 1979-1981
-
-
Mantegna, R.N.1
Bulyrev, S.V.2
Goldberger, A.L.3
-
40
-
-
5544253324
-
Can Zipf distinguish language from noise in noncoding DNA
-
Israeloff, N. E., Kaganlenko, M., and Chan, K. (1996) Can Zipf distinguish language from noise in noncoding DNA. Phys. Rev. Lett. 76, 1976;
-
(1996)
Phys. Rev. Lett.
, vol.76
, pp. 1976
-
-
Israeloff, N.E.1
Kaganlenko, M.2
Chan, K.3
-
41
-
-
33746360157
-
No signs of hidden language in noncoding DNA
-
Bonhoeffer, S., Herz, A. V. M., Boerlijst, M. C., Nee, S., Nowak, M. A., and May, R. M. (1996) No signs of hidden language in noncoding DNA. Phys. Rev. Lett. 76, 1977;
-
(1996)
Phys. Rev. Lett.
, vol.76
, pp. 1977
-
-
Bonhoeffer, S.1
Herz, A.V.M.2
Boerlijst, M.C.3
Nee, S.4
Nowak, M.A.5
May, R.M.6
-
42
-
-
11744350980
-
Comment on "Linguistic features of noncoding DNA sequences."
-
Voss, R. F. (1996) Comment on "Linguistic features of noncoding DNA sequences." Phys. Rev. Lett. 76, 1978.
-
(1996)
Phys. Rev. Lett.
, vol.76
, pp. 1978
-
-
Voss, R.F.1
-
43
-
-
0021810948
-
The mosaic genome of warm-blooded vertebrates
-
Bernardi, G., Olofsson, B., Filipski, J., et al. (1985) The mosaic genome of warm-blooded vertebrates. Science 228, 953-958.
-
(1985)
Science
, vol.228
, pp. 953-958
-
-
Bernardi, G.1
Olofsson, B.2
Filipski, J.3
-
44
-
-
0024557590
-
Stochastic models for heterogeneous DNA sequences
-
Churchill, G. A. (1989) Stochastic models for heterogeneous DNA sequences. Bull. Math. Biol. 51, 79-94.
-
(1989)
Bull. Math. Biol.
, vol.51
, pp. 79-94
-
-
Churchill, G.A.1
-
45
-
-
0033991967
-
Isochores and the evolutionary genomics of vertebrates
-
Bernardi, G. (2000) Isochores and the evolutionary genomics of vertebrates. Gene 241, 3-17.
-
(2000)
Gene
, vol.241
, pp. 3-17
-
-
Bernardi, G.1
-
46
-
-
0035802388
-
Isochore chromosome maps of eukaryotic genomes
-
Oliver, J. L., Bernaola-Gálvan, P., Carpena, P., and Román-Roldán, R. (2001) Isochore chromosome maps of eukaryotic genomes. Gene 276, 47-56.
-
(2001)
Gene
, vol.276
, pp. 47-56
-
-
Oliver, J.L.1
Bernaola-Gálvan, P.2
Carpena, P.3
Román- Roldán, R.4
-
47
-
-
0035802384
-
Delineating relative homogeneous G + C domains in DNA sequences
-
Li, W. (2001) Delineating relative homogeneous G + C domains in DNA sequences. Gene 276, 57-72.
-
(2001)
Gene
, vol.276
, pp. 57-72
-
-
Li, W.1
-
48
-
-
0024805395
-
The isochore organization of the human genome
-
Bernardi, G (1989) The isochore organization of the human genome. Annu. Rev. Genet. 23, 637-661.
-
(1989)
Annu. Rev. Genet.
, vol.23
, pp. 637-661
-
-
Bernardi, G.1
-
49
-
-
0022592245
-
A simple way to look at DNA
-
Gates, M. A. (1986) A simple way to look at DNA. J. Theor. Biol. 119, 319-328.
-
(1986)
J. Theor. Biol.
, vol.119
, pp. 319-328
-
-
Gates, M.A.1
-
50
-
-
3342916075
-
Fractal measures arid their singularities: The characterization of strange sets
-
Halsey, T. C., Jensen, M. H., Kadanoff, L. P., Procaccia I., and Shraiman, B. I. (1986) Fractal measures arid their singularities: the characterization of strange sets}. Phys. Rev. A 33, 1141-1151.
-
(1986)
Phys. Rev. A
, vol.33
, pp. 1141-1151
-
-
Halsey, T.C.1
Jensen, M.H.2
Kadanoff, L.P.3
Procaccia, I.4
Shraiman, B.I.5
-
53
-
-
0000779360
-
Detecting strange attractors in turbulence
-
Takens, F. (1981) Detecting strange attractors in turbulence. Lect. Notes Math. 898, 366-381.
-
(1981)
Lect. Notes Math.
, vol.898
, pp. 366-381
-
-
Takens, F.1
-
54
-
-
0000498214
-
Efficient box-counting determination of generalized fractal dimensions
-
Block, A., von Bloh, W., and Schellnhuber, H. J. (1990) Efficient box-counting determination of generalized fractal dimensions. Phys. Rev. A 42, 1869-1874.
-
(1990)
Phys. Rev. A
, vol.42
, pp. 1869-1874
-
-
Block, A.1
Von Bloh, W.2
Schellnhuber, H.J.3
-
55
-
-
0002917936
-
An efficient algorithm for fast O(N + ln(N)) box counting
-
Hou, X.-J., Gilmore, R., Mindlin G. B., and Solari, H. G. (1990) An efficient algorithm for fast O(N + ln(N)) box counting. Phys. Lett. A 151, 43-46.
-
(1990)
Phys. Lett. A
, vol.151
, pp. 43-46
-
-
Hou, X.-J.1
Gilmore, R.2
Mindlin, G.B.3
Solari, H.G.4
-
56
-
-
0000634380
-
Box-counting multifractal analysis
-
Meisel, L. V., Johnson M., and Cote, P. J. (1992) Box-counting multifractal analysis. Phys. Rev. A 45, 6989-6995.
-
(1992)
Phys. Rev. A
, vol.45
, pp. 6989-6995
-
-
Meisel, L.V.1
Johnson, M.2
Cote, P.J.3
-
57
-
-
0000529148
-
A smart covering for a box-counting algorithm
-
Yamaguti, M. and Prado, C. P. C. (1997) A smart covering for a box-counting algorithm. Phys. Rev. E 55, 7726-7732.
-
(1997)
Phys. Rev. E
, vol.55
, pp. 7726-7732
-
-
Yamaguti, M.1
Prado, C.P.C.2
-
58
-
-
41349097048
-
Lyapunov spectrum from time series using moving boxes
-
Oiwa, N. N. and Fiedler-Ferrara, N. (2002) Lyapunov spectrum from time series using moving boxes. Phys. Rev. E 65, 036702/1-10.
-
(2002)
Phys. Rev. E
, vol.65
-
-
Oiwa, N.N.1
Fiedler-Ferrara, N.2
-
59
-
-
0004161838
-
-
Cambridge University Press, Cambridge
-
Press, W. H., Flannery, B. P., Teukolsky S. A., and Vetterling, W. T. (1989) Numerical Recipes: The Art of Scientific Computing, Cambridge University Press, Cambridge.
-
(1989)
Numerical Recipes: The Art of Scientific Computing
-
-
Press, W.H.1
Flannery, B.P.2
Teukolsky, S.A.3
Vetterling, W.T.4
-
60
-
-
45349112574
-
Determination of fractal dimensions for geometrical multifractals
-
Tél, T., Fülöp A., and Vicsek, T. (1989) Determination of fractal dimensions for geometrical multifractals. Physica A 159, 155-166.
-
(1989)
Physica A
, vol.159
, pp. 155-166
-
-
Tél, T.1
Fülöp, A.2
Vicsek, T.3
-
61
-
-
35949014446
-
Direct determination of the f(α) singularity spectrum and its application to fully developed turbulence
-
Chhabra, A. B., Meneveau, C., Jensen R. V., and Sreenivasan, K. R. (1989) Direct determination of the f(α) singularity spectrum and its application to fully developed turbulence. Phys. Rev. A 40, 5284-5294.
-
(1989)
Phys. Rev. A
, vol.40
, pp. 5284-5294
-
-
Chhabra, A.B.1
Meneveau, C.2
Jensen, R.V.3
Sreenivasan, K.R.4
-
62
-
-
0002223143
-
A direct calculation of the spectrum of singularities f(α) of multifractals
-
Yamaguti, M. and Prado, C. P. C. (1995) A direct calculation of the spectrum of singularities f(α) of multifractals. Phys. Lett. A 206, 318-322.
-
(1995)
Phys. Lett. A
, vol.206
, pp. 318-322
-
-
Yamaguti, M.1
Prado, C.P.C.2
-
63
-
-
0001576305
-
Local false nearest neighbors arid dynamical dimensions from observed chaotic data
-
Abarbanel, H. D. I. and Kennel, M. B. (1993) Local false nearest neighbors arid dynamical dimensions from observed chaotic data. Phys. Rev. E 47, 3057-3068.
-
(1993)
Phys. Rev. E
, vol.47
, pp. 3057-3068
-
-
Abarbanel, H.D.I.1
Kennel, M.B.2
|