Friend, an integrated analytical front-end application for bioinformatics

Bioinformatics

Volumn 21, Issue 18, 2005, Pages 3677-3678

  Abyzov, Alexej ^a   Errami, Mounir ^a   Leslin, Chesley M ^a   Ilyin, Valentin A ^a  

^a NORTHEASTERN UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PROTEIN DERIVATIVE; RNA;

ARTICLE; BIOINFORMATICS; COLORIMETRY; COMPUTER INTERFACE; COMPUTER NETWORK; COMPUTER PROGRAM; DNA DETERMINATION; MOLECULAR LIBRARY; MOLECULAR MODEL; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DNA INTERACTION; PROTEIN FAMILY; PROTEIN FOLDING; PROTEIN FUNCTION; PROTEIN MOTIF; PROTEIN PROTEIN INTERACTION; PROTEIN STRUCTURE; RNA ANALYSIS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; SEQUENCE DATABASE; STRUCTURE ANALYSIS;

EID: 24644452522     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bti602     Document Type: Article

References (12)

1. Barber,C.B. et al. (1996) The Quickhull algorithm for convex hulls. ACM Trans. Math. Softw., 22, 469-483.
2. Clamp,M. et al. (2004) The Jalview Java Alignment Editor. Bioinformatics, 20, 426-427.
3. Delaunay,B. (1934) Sur La Sphere Vide. Bull. Acad. Science USSR VII: Class Sci. Mat. Nat., 793-800.
4. Ilyin,V.A. et al. (2003) ModView, visualisation of multiple protein sequences and structures. Bioinformatics, 19, 165-166.
5. Ilyin,V.A. et al. (2004) Structural alignment of proteins by a novel TOPOFIT method, as a superimposition of common volumes at a topomax point. Protein Sci., 13, 1865-1874.
6. Jeanmougin,F. et al. (1998). Multiple sequence alignment with Clustal X. Trends Biochem. Sci., 23, 403-405.
7. Johnson,J.M. et al. (2003). Protein family annotation in a multiple alignment viewer. Bioinformatics, 19, 544-545.
8. Leslin,C.M. et al. (2004) Structural Exon Database, SEDB, mapping exon boundaries on multiple protein structures. Bioinformatics, 20, 1801-1803.
9. Sali,A. and Blundell,T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J. Mol. Biol., 234, 779-815.
10. Schwede,T. et al. (2003) SWISS-MODEL: An automated protein homology-modeling server. Nucleic Acids Res., 31, 3381-3385.
11. Uzun,A. et al. (2005) Structure SNP (StSNP) Database: A tool for modeling nsSNPs locations on proteins and presenting their metabolic pathways. RECOMB 2005, p. 179.
12. Wang,Y. et al. (2000) Cn3D: Sequence and structure views for entrez. Trends Biochem. Sci., 25, 300-302.