-
1
-
-
0025725905
-
Instance-based learning algorithms
-
Aha,D., Kibler,D. and Albert,M. (1991) Instance-based learning algorithms. Machine Learn., 6, 37-66.
-
(1991)
Machine Learn.
, vol.6
, pp. 37-66
-
-
Aha, D.1
Kibler, D.2
Albert, M.3
-
2
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul,S.F., Madden,T.L., Schaffer,A.A., Zhang,J., Zhang,Z., Miller,W. and Lipman,D.J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402.
-
(1997)
Nucleic Acids Res.
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
3
-
-
0034602774
-
Knowledge-based analysis of microarray gene expression data by using support vector machines
-
Brown,M., Grundy,W.N., Lin,D., Cristianini,N., Sugnet,C.W., Furey,T., Ares,M., Jr, and Haussler,D. (2000) Knowledge-based analysis of microarray gene expression data by using support vector machines. Proc. Natl Acad. Sci., USA, 97, 262-267.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 262-267
-
-
Brown, M.1
Grundy, W.N.2
Lin, D.3
Cristianini, N.4
Sugnet, C.W.5
Furey, T.6
Ares Jr., M.7
Haussler, D.8
-
4
-
-
0036169141
-
Machine learning of functional class from phenotype data
-
Clare,A. and King,R.D. (2002) Machine learning of functional class from phenotype data. Bioinformatics, 18, 160-166.
-
(2002)
Bioinformatics
, vol.18
, pp. 160-166
-
-
Clare, A.1
King, R.D.2
-
5
-
-
0345769886
-
From function to sequence, an integrated view of the genome texts
-
Danchin,A. (1999) From function to sequence, an integrated view of the genome texts. Physica A, 273, 92-98.
-
(1999)
Physica A
, vol.273
, pp. 92-98
-
-
Danchin, A.1
-
6
-
-
0030628465
-
Prediction of enzyme classification from protein sequence without the use of sequence similarity
-
AAAI, Halkidiki, Greece, June 21-26, 1997
-
des Jardins,M., Karp,P., Krummenacker,M., Lee,T. and Ouzounis,C. (1997) Prediction of enzyme classification from protein sequence without the use of sequence similarity. Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology. AAAI, Halkidiki, Greece, June 21-26, 1997.
-
(1997)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology
-
-
des Jardins, M.1
Karp, P.2
Krummenacker, M.3
Lee, T.4
Ouzounis, C.5
-
7
-
-
0035424599
-
Intrinsic errors in genome annotation
-
Devos,D. and Valencia,A. (2001) Intrinsic errors in genome annotation. Trends Genet., 17, 429-431.
-
(2001)
Trends Genet.
, vol.17
, pp. 429-431
-
-
Devos, D.1
Valencia, A.2
-
8
-
-
0033523989
-
Protein interaction maps for complete genomes based on gene fusion events
-
Enright,A.J., Iliopoulos,I., Kyrpides,N.C. and Ouzounis,C.A. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
-
(1999)
Nature
, vol.402
, pp. 86-90
-
-
Enright, A.J.1
Iliopoulos, I.2
Kyrpides, N.C.3
Ouzounis, C.A.4
-
9
-
-
0035451127
-
Modularity in the gain and loss of genes: Application for function prediction
-
Ettema,T., Oost,J. and Huynen,M. (2001) Modularity in the gain and loss of genes: application for function prediction. Trends Genet., 17, 485-487.
-
(2001)
Trends Genet.
, vol.17
, pp. 485-487
-
-
Ettema, T.1
Oost, J.2
Huynen, M.3
-
10
-
-
0036184369
-
Hyaloraphidium curvatum: A linear mitochondrial genome, tRNA editing, and a link to lower fungi
-
Forget,L., Ustinova,J., Wang,Z., Huss,V.A.R. and Lang,F. (2002) Hyaloraphidium curvatum: a linear mitochondrial genome, tRNA editing, and a link to lower fungi. Mol. Biol. Evol., 19, 310-319.
-
(2002)
Mol. Biol. Evol.
, vol.19
, pp. 310-319
-
-
Forget, L.1
Ustinova, J.2
Wang, Z.3
Huss, V.A.R.4
Lang, F.5
-
11
-
-
0032242111
-
Microbial genescapes: Phyletic and functional patterns of ORF distribution among prokaryotes
-
Gaasterland,T. and Ragan,M.A. (1998) Microbial genescapes: phyletic and functional patterns of ORF distribution among prokaryotes. Microb. Comp. Genomics, 3, 199-217.
-
(1998)
Microb. Comp. Genomics
, vol.3
, pp. 199-217
-
-
Gaasterland, T.1
Ragan, M.A.2
-
12
-
-
0032229196
-
Sources of systematic error in functional annotation of genomes: Domain rearrangement, nonorthologous gene displacement, and operon disruption
-
Galperin,M.Y. and Koonin,E.V. (1998) Sources of systematic error in functional annotation of genomes: domain rearrangement, nonorthologous gene displacement, and operon disruption. In Silico Biol., 1, 0007.
-
(1998)
In Silico Biol.
, vol.1
, pp. 0007
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
13
-
-
18444390875
-
Prediction of human protein function from post-translational modifications and localization features
-
Jensen,L.J., Gupta,R., Blom,N., Devos,D., Tamames,J., Kesmir,C., Nielsen,H., Staerfeldt,H.H., Rapacki,K., Workman,C., et al. (2002) Prediction of human protein function from post-translational modifications and localization features. J. Mol. Biol., 319, 1257-1265.
-
(2002)
J. Mol. Biol.
, vol.319
, pp. 1257-1265
-
-
Jensen, L.J.1
Gupta, R.2
Blom, N.3
Devos, D.4
Tamames, J.5
Kesmir, C.6
Nielsen, H.7
Staerfeldt, H.H.8
Rapacki, K.9
Workman, C.10
-
14
-
-
0034160040
-
On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: The need for machine learning
-
Kell,D. and King,R. (2000) On the optimization of classes for the assignment of unidentified reading frames in functional genomics programmes: the need for machine learning. Trends Biotechnol., 18, 93-98.
-
(2000)
Trends Biotechnol.
, vol.18
, pp. 93-98
-
-
Kell, D.1
King, R.2
-
15
-
-
0000875752
-
Accurate prediction of protein functional class in the M.tuberculosis and E.coli genomes using data mining
-
King,R., Karwath,A., Clare,A. and Dehaspe,L. (2000a) Accurate prediction of protein functional class in the M.tuberculosis and E.coli genomes using data mining. Yeast, 17, 283-293.
-
(2000)
Yeast
, vol.17
, pp. 283-293
-
-
King, R.1
Karwath, A.2
Clare, A.3
Dehaspe, L.4
-
16
-
-
0034592764
-
Genome scale prediction of protein functional class from sequence using data mining
-
King,R., Karwath,A., Clare,A. and Dehaspe,L. (2000b) Genome scale prediction of protein functional class from sequence using data mining. KDD 2000.
-
(2000)
KDD 2000
-
-
King, R.1
Karwath, A.2
Clare, A.3
Dehaspe, L.4
-
17
-
-
0035006162
-
The utility of different representations of protein sequence for predicting functional class
-
King,R., Karwath,A., Clare,A. and Dehaspe,L. (2001) The utility of different representations of protein sequence for predicting functional class. Bioinformatics, 17, 445-454.
-
(2001)
Bioinformatics
, vol.17
, pp. 445-454
-
-
King, R.1
Karwath, A.2
Clare, A.3
Dehaspe, L.4
-
18
-
-
0021772378
-
Prediction of protein function from sequence properties: Discriminant analysis of a data base
-
Klein,P., Kanehisa,M. and DeLisi,C. (1984) Prediction of protein function from sequence properties: discriminant analysis of a data base. Biochim. Biophys. Acta, 787, 221-226.
-
(1984)
Biochim. Biophys. Acta
, vol.787
, pp. 221-226
-
-
Klein, P.1
Kanehisa, M.2
DeLisi, C.3
-
19
-
-
0033523854
-
A combined algorithm for genome-wide prediction of protein function
-
Marcotte,E., Pellegrini,M., Thompson,M., Yeates,T. and Eisenberg,D. (1999a) A combined algorithm for genome-wide prediction of protein function. Nature, 402, 83-86.
-
(1999)
Nature
, vol.402
, pp. 83-86
-
-
Marcotte, E.1
Pellegrini, M.2
Thompson, M.3
Yeates, T.4
Eisenberg, D.5
-
20
-
-
0033618555
-
Detecting protein function and protein-protein interaction from genome sequences
-
Marcotte,E.M., Pellegrini,M., Ng,H.L., Rice,D.W., Yeates,T.O. and Eisenberg,D. (1999b) Detecting protein function and protein-protein interaction from genome sequences. Science, 285, 751-753.
-
(1999)
Science
, vol.285
, pp. 751-753
-
-
Marcotte, E.M.1
Pellegrini, M.2
Ng, H.L.3
Rice, D.W.4
Yeates, T.O.5
Eisenberg, D.6
-
21
-
-
0034710981
-
Localizing proteins in the cell from their phylogenetic profiles
-
Marcotte,E.M., Xenarios,I., Bliek,A.M. and Eisenberg,D. (2000) Localizing proteins in the cell from their phylogenetic profiles. Proc. Natl Acad. Sci., USA, 97, 12115-12120.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12115-12120
-
-
Marcotte, E.M.1
Xenarios, I.2
Bliek, A.M.3
Eisenberg, D.4
-
22
-
-
0033055062
-
The use of gene clusters to infer functional coupling
-
Overbeek,R., Fonstein,M., Souza,M.D., Pusch,G.D. and Maltsev,N. (1999) The use of gene clusters to infer functional coupling. Proc. Natl Acad. Sci., USA, 96, 2896-2901.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 2896-2901
-
-
Overbeek, R.1
Fonstein, M.2
Souza, M.D.3
Pusch, G.D.4
Maltsev, N.5
-
23
-
-
0034818556
-
Gene functional classification from heterogenous data
-
ACM, Montreal, Canada, April 22-25
-
Pavlidis,P., Weston,J., Cai,J. and Grundy,W. (2001) Gene functional classification from heterogenous data. Proceedings of the Fifth International Conference on Computational Molecular Biology (RECOMB 2001). ACM, Montreal, Canada, April 22-25.
-
(2001)
Proceedings of the Fifth International Conference on Computational Molecular Biology (RECOMB 2001)
-
-
Pavlidis, P.1
Weston, J.2
Cai, J.3
Grundy, W.4
-
24
-
-
0023989064
-
Improved tools for biological sequence comparison
-
Pearson,W.R. and Lipman,D.J. (1988) Improved tools for biological sequence comparison. Proc. Natl Acad. Sci., USA, 85, 2444-2448.
-
(1988)
Proc. Natl. Acad. Sci. USA
, vol.85
, pp. 2444-2448
-
-
Pearson, W.R.1
Lipman, D.J.2
-
25
-
-
0033551248
-
Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles
-
Pellegrini,M., Marcotte,E.M., Thompson,M.J., Eisenberg,D. and Yeates,T.O. (1999) Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. Proc. Natl Acad. Sci., USA, 96, 4285-4288.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 4285-4288
-
-
Pellegrini, M.1
Marcotte, E.M.2
Thompson, M.J.3
Eisenberg, D.4
Yeates, T.O.5
-
26
-
-
0034503382
-
Opinion: Long branch attraction and protist phylogeny
-
Philippe,H. (2000) Opinion: long branch attraction and protist phylogeny. Protist, 15, 307-316.
-
(2000)
Protist
, vol.15
, pp. 307-316
-
-
Philippe, H.1
-
28
-
-
0034711958
-
Statistical analysis of amino acid patterns in transmembrane helices: The GxxxG motif occurs frequently and in association with β-branched residues at neighboring positions
-
Senes,A., Gerstein,M. and Engelman,D.M. (2000) Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with β-branched residues at neighboring positions. J. Mol. Biol., 296, 921-936.
-
(2000)
J. Mol. Biol.
, vol.296
, pp. 921-936
-
-
Senes, A.1
Gerstein, M.2
Engelman, D.M.3
-
29
-
-
0037007019
-
Rate heterogeneity among lineages of tracheophytes: Integration of molecular and fossil data and evidence for molecular living fossils
-
Soltis,P.S., Soltis,D.E., Savolainen,V, Crane,P.R. and Barraclough,T.G. (2002) Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils. Proc. Natl Acad. Sci., USA, 99, 4430-4435.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4430-4435
-
-
Soltis, P.S.1
Soltis, D.E.2
Savolainen, V.3
Crane, P.R.4
Barraclough, T.G.5
-
30
-
-
0035874906
-
From genome to function
-
Thornton,J.M. (2001) From genome to function. Science, 292, 2095-2097.
-
(2001)
Science
, vol.292
, pp. 2095-2097
-
-
Thornton, J.M.1
-
31
-
-
0037057376
-
Genomic functional annotation using co-evolution profiles of gene clusters
-
Zheng,Y., Roberts,R.J. and Kasif,S. (2002) Genomic functional annotation using co-evolution profiles of gene clusters. Genome Biol., 3, Research0060.1-Research0060.9.
-
(2002)
Genome Biol.
, vol.3
-
-
Zheng, Y.1
Roberts, R.J.2
Kasif, S.3
|