Screening for novel essential genes of Saccharomyces cerevisiae involved in protein secretion

Yeast

Volumn 21, Issue 6, 2004, Pages 463-471

  Davydenko, Svetlana G ^a,d   Juselius, Jukka K ^a   Munder, Thomas ^b   Bogengruber, Edith ^c   Jäntti, Jussi ^a   Keränen, Sirkka ^a  

^a VTT TECHNICAL RESEARCH CENTRE OF FINLAND   (Finland)

^b HANS KNÖLL INSTITUTE   (Germany)

^c UNIVERSITY OF SALZBURG   (Austria)

^d INSTITUTE OF CYTOLOGY   (Russian Federation)

Author keywords

HSP150 PIR2; Novel essential genes; Protein secretion; Ribosome assembly; Saccharomyces cerevisiae

Indexed keywords

DOXYCYCLINE; HEAT SHOCK PROTEIN;

ARTICLE; BIOGENESIS; CELL GROWTH; CONTROLLED STUDY; CULTURE MEDIUM; DOWN REGULATION; FUNGAL GENE; FUNGAL STRAIN; GENE IDENTIFICATION; GENETIC CODE; GENETIC SCREENING; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DEGRADATION; PROTEIN MODIFICATION; PROTEIN SECRETION; RIBOSOME; SACCHAROMYCES CEREVISIAE; WESTERN BLOTTING; YEAST CELL;

BLOTTING, WESTERN; DOXYCYCLINE; GENES, ESSENTIAL; GENES, FUNGAL; GLYCOPROTEINS; HEAT-SHOCK PROTEINS; OPEN READING FRAMES; PROMOTER REGIONS (GENETICS); SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS;

SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 2442664229     PISSN: 0749503X     EISSN: None     Source Type: Journal    
DOI: 10.1002/yea.1063     Document Type: Article

References (46)

1. Allmang C, Kufel J, Chanfreau G, et al. 1999. Functions of the exosome in rRNA, snoRNA and snRNA synthesis. EMBO J 18: 5399-5410.
2. Bassler J, Grandi P, Gadal O, et al. 2001. Identification of a 60S preribosomal particle that is closely linked to nuclear export. Mol Cell 8: 517-529.
3. Belgareh-Touzé N, Corral-Debrinski M, Launhardt H, et al. 2003. Yeast functional analysis: identification of two essential genes involved in ER to Golgi trafficking. Traffic 4: 607-617.
4. Burri L, Varlamov O, Doege CA, et al. 2003. A SNARE required for retrograde transport to the endoplasmic reticulum. Proc Natl Acad Sci USA 100: 9873-9877.
5. Buscemi G, Saracino F, Masnada D, Carbone M L A. 2000. The Saccharomyces cerevisiae SDA1 gene is required for actin cytoskeleton organization and cell cycle progression. J Cell Sci 113: 1199-1211.
6. Chow TY-K, Ash JJ, Dignard D, Thomas DY. 1992. Screening and identification of a gene, PSE-1, that affects protein secretion in Saccharomyces cerevisiae. J Cell Sci 101: 709-719.
7. Delahodde A, Pandjaitan R, Corral-Debrinski M, Jacq C. 2001. Pse1/Kap121-dependent nuclear localization of the major yeast multidrug resistance (MDR) transcription factor Pdr1. Mol Microbiol 39: 301-312.
8. Dilcher M, Veith B, Chidambaram S, et al. 2003. Use1p is a yeast SNARE protein required for retrograde traffic to the ER. EMBO J 22: 3664-3674.
9. Dunbar DA, Dragon F, Lee SJ, Baserga SJ. 2000. A nucleolar protein related to ribosomal protein L7 is required for an early step in large subunit biogenesis. Proc Natl Acad Sci USA 97: 13 027-13 032.
10. Fatal N, Suntio T, Makarow M. 2002. Selective protein exit from yeast endoplasmic reticulum in absence of functional COPII coat component Se13p. Mol Biol Cell 13: 4130-4140.
11. Fu H, Reis N, Lee Y, Glickman MH, Vierstra D. 2001. Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome. EMBO J 20: 7096-7107.
12. Gari E, Piedrafita L, Aldea M, Herrero E. 1997. A set of vectors with a tetracycline-regulatable promoter system for modulated gene expression in Saccharomyces cerevisiae. Yeast 13: 837-848.
13. Gavin A-C, Bösche M, Krause R, et al. 2002. Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141-147.
14. Gaynor EC, Emr SD. 1997. COPI-independent anterograde transport: cargo-selective ER to Golgi protein transport in yeast COPI mutants. J Cell Biol 136: 789-802.
15. Glickman MH, Rubin DM, Fried VA, Finley D. 1998. The regulatory particle of the Saccharomyces cerevisiae proteasome. Mol Cell Biol 18: 3149-3162.
16. Goffeau A, Barrell BG, Bussey H, et al. 1996. Life with 6000 genes. Science 274: 563-567.
17. Govindan B, Bowser R, Novick P. 1995. The role of Myo2, a yeast class V myosin, in vesicular transport. J Cell Biol 128: 1055-1068.
18. Griffiths G, Simons K. 1986. The trans-Golgi network: sorting at the exit site of the Golgi complex. Science 234: 438-443.
19. Harnpicharnchai P, Jakovljevic J, Horsey E, et al. 2001. Composition and functional characterization of yeast 66s ribosome assembly intermediates. Mol Cell 8: 505-515.
20. Haselbeck A, Tanner W. 1986. O-Glycosylation in Saccharomyces cerevisiae is initiated in endoplasmic reticulum. FEBS Lett 158: 335-338.
21. Helenius A, Aebi M. 2001. Intracellular functions of N-linked glycans. Science 291: 2364-2369.
22. Herscovics A, Orlean P. 1993. Glycoprotein biosynthesis in yeast. FASEB J 7: 540-550.
23. Ihmels J, Friedlander G, Bergmann S, et al. 2002. Revealing modular organization in the yeast transcriptional network. Nature Genet 31: 370-377.
24. Isoyama T, Murayama A, Nomoto A, Kuge S. 2001. Nuclear import of the yeast AP-1-like transcription factor Yap1p is mediated by transport receptor Pse1p, and this import step is not affected by oxidative stress. J Biol Chem 276: 21 863-21 869.
25. Kapteyn JC, Van Egmond P, Sievi E, et al. 1999. The contribution of the O-glycosylated protein Pir2/Hsp150 to the construction of the yeast cell wall in wild-type cells and β1,6-glucan-deficient mutants. Mol Microbiol 31: 1835-1844.
26. Laemmli UK. 1970. Cleavage of structural proteins during assembly of the head of bacteriophage T4. Nature 227: 680-685.
27. Li Y, Moir RD, Sethy-Coraci IK, Warner JR, Willis IM. 2000. Repression of ribosome and tRNA synthesis in secretion-defective cells is signaled by a novel branch of the cell integrity pathway. Mol Cell Biol 20: 3843-3851.
28. Lipschutz JH, Lingappa VR, Mostov KE. 2003. The exocyst affects protein synthesis by acting on the translocation machinery of the endoplasmic reticulum. J Biol Chem 278: 20 954-20 960.
29. Lupashin VV, Konova SV, Ratner YEN, Tsiomenko AB, Kulaev IS. 1992. Identification of a novel secreted glycoprotein of yeast Saccharomyces cerevisiae stimulated by heat shock. Yeast 8: 157-169.
30. Mizuta K, Warner JR. 1994. Continued functioning of the secretory pathway is essential for ribosome synthesis. Mol Cell Biol 14: 2493-2502.
31. Mosammaparast N, Guo Y, Shabanowitz J, Hunt DF, Pemberton LF. 2002. Pathways mediating the nuclear import of histones H3 and H4 in yeast. J Biol Chem 277: 862-868.
32. Mrsa V, Seidi T, Gentzsch M, Tanner W. 1997. Specific labelling of cell wall proteins by biotinylation. Identification of four covalently linked O-mannosylated proteins of Saccharomyces cerevisiae. Yeast 13: 1145-1154.
33. Nanduri J, Mitra S, Andrei C, et al. 1999. An unexpected link between the secretory path and the organization of the nucleus. J Biol Chem 274: 33 785-33 789.
34. Nierras CR, Warner JR. 1999. Protein kinase C enables the regulatory circuit that connects membrane synthesis to ribosome synthesis in Saccharomyces cerevisiae. J Biol Chem 274: 13 235-13 241.
35. Oliver SG 1996. From DNA sequence to biological function. Nature 381: 653-654.
36. Palade G. 1975. Intracellular aspects of the process of protein synthesis. Science 189: 347-358.
37. Planta RJ, Brown AJ, Cadahia JL, et al. 1999. Transcript analysis of 250 novel yeast genes from chromosome XIV. Yeast 15: 329-350.
38. Racevskis J, Dill A, Stockert R, Fineberg S. 1996. Cloning of a novel nucleolar guanosine 5′-triphosphate binding protein autoantigen from a breast tumor. Cell Growth Different 7: 271-280.
39. Rout MP, Blobel G, Aitchison JD. 1997. A distinct nuclear import pathway used by ribosomal proteins. Cell 89: 715-725.
40. Russo P, Kalkkinen N, Sareneva H, Paakkola J, Makarow M. 1992. A heat shock gene from Saccharomyces cerevisiae encoding a secretory glycoprotein. Proc Natl Acad Sci USA 89: 3671-3675.
41. Saveanu C, Bienvenu D, Namane A, et al. 2001. Nog2p, a putative GTPase associated with pre-60S subunit and required for late 60S maturation steps. EMBO J 20: 6475-6484.
42. Sato M, Sato K, Nishikawa S-I, et al. 1999. The yeast RER2 gene, identified by endoplasmic reticulum protein localization mutations, encodes cis-prenyltransferase, a key enzyme in dolichol synthesis. Mol Cell Biol 19: 471-483.
43. Sherman F, Fink G, Hicks JB. 1989. Methods in Yeast Genetics. Cold Spring Harbor Laboratory Press: New York.
44. Toikkanen JH, Miller KJ, Söderlund H, Jäntti J, Keränen S. 2003. The β subunit of the Sec61p ER translocon interacts with the exocyst complex in Saccharomyces cerevisiae. J Biol Chem 278: 20 946-20 953.
45. Zhao Y, Sohn J-H, Warner JR. 2003. Autoregulation in the biosynthesis of ribosomes. Mal Cell Biol 23: 699-707.
46. Zimmerman Z, Kellogg DR. 2001. The Sda1 protein is required for passage through start. Mol Biol Cell 12: 201-219.