Molecular cloning and characterization of chemokine-like factor super family member 1 (CKLFSF1), a novel human gene with at least 23 alternative splicing isoforms in testis tissue

International Journal of Biochemistry and Cell Biology

Volumn 36, Issue 8, 2004, Pages 1492-1501

  Wang, Lu ^b   Wu, Chunxiao ^a   Zheng, Ying ^a   Qiu, Xiaoyan ^b   Wang, Li ^a   Fan, Hui ^b   Han, Wenling ^b   Lv, Bingfeng ^a   Wang, Ying ^a   Zhu, Xiaohui ^a   Xu, Mingxu ^b   Ding, Peiguo ^a   Cheng, Shanhong ^b   Zhang, Yingmei ^b   Song, Quansheng ^b   Ma, Dalong ^b  

^a PEKING UNIVERSITY HEALTH SCIENCE CENTER   (China)

^b PEKING UNIVERSITY   (China)

Author keywords

base pair(s); bp; cDNA; chemokine like factor; chemokine like factor super family member 1; CKLF; CKLFSF1; DNA complementary to RNA; double strand; ds; EST; expressed sequence tag; horseradish peroxidase; HRP; kb; kDa; kilobase(s) or 1000 bp; kilodalton(s); nt

Indexed keywords

CHEMOKINE LIKE FACTOR SUPER FAMILY MEMBER 1; COMPLEMENTARY DNA; GENE PRODUCT; PROTEIN; UNCLASSIFIED DRUG;

AMINO ACID SEQUENCE; ARTICLE; BIOINFORMATICS; CELL STIMULATION; CELL STRAIN U937; CHROMOSOME 16Q; CHROMOSOME 22; CONTROLLED STUDY; DNA SEQUENCE; DNA SPLICING; EXON; GENE EXPRESSION; GENE FUNCTION; GENE IDENTIFICATION; GENE LOCATION; GENETIC ANALYSIS; HUMAN; HUMAN TISSUE; IMMUNOHISTOCHEMISTRY; INTRON; MALE; MOLECULAR CLONING; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEIN FAMILY; PROTEIN ISOLATION; PROTEIN LOCALIZATION; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS; SPERMATOCYTE; SPERMATOGENESIS; TESTIS; TESTIS DEVELOPMENT; TISSUE WATER; TRANSCRIPTION INITIATION SITE; VALIDATION PROCESS;

ALTERNATIVE SPLICING; BASE SEQUENCE; CHEMOKINES; CHROMOSOMES, HUMAN, PAIR 16; CLONING, MOLECULAR; GENE COMPONENTS; HUMANS; MALE; MOLECULAR SEQUENCE DATA; PROTEIN ISOFORMS; RNA, MESSENGER; TESTIS; TISSUE DISTRIBUTION; TRANSCRIPTION INITIATION SITE; U937 CELLS;

ARMORACIA RUSTICANA;

EID: 2442502775     PISSN: 13572725     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biocel.2003.11.017     Document Type: Article

References (22)

1. Dahle M.K., Reinton N., Orstavik S. Novel alternatively spliced mRNA 1c of the protein kinase A RIα subunit is implicated in haploid germ cell specific expression. Molecular Reproduction and Development. 59:2001;11-16
2. Don J., Stelzer G. The expanding family of CREB/CREM transcription factors that are involved with spermatogenesis. Molecular and Cellular Endocrinology. 187:2002;115-124
3. Elliott D.J. RBMY genes and AZFb deletions. Journal of Endocrinological Investigation. 23:2000;652-658
4. Fairbrother W.G., Yeh R.-F., Sharp P.A., Burge C.B. Predictive identification of exonic splicing enhancers in human genes. Science. 297:2002;1007-1013
5. Florea L., Hartzell G., Zhang Z., Rubin G.M., Miller W. A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Research. 9:1998;967-974
6. Han W., Ding P., Xu M., Wang L., Rui M., Shi S., et al. Identification of eight genes encoding chemokine-like factor super family member 1-8 (CKLFSF1-8) by in silico cloning and experimental validation. Genomics. 81:2003;609-617
7. Han W.L., Lou Y.X., Tang J.M., Zhang Y.M., Chen Y., Li Y., et al. Molecular cloning and characterization of chemokine-like factor 1 (CKLF1), a novel human cytokine with unique structure and potential chemotactic activity. The Biochemical Journal. 357:2001;127-135
8. Hsu, C. -L., Yeh, S., Chen, Y. -L., Ting, H. -J., Hu, Y. -C., & Lin, H., et al. (2003). The use of phage display technique for the isolation of androgen receptor interacting peptides with F/WXXLF/W and FXXLY new signature motifs. JBC Paper.
9. Kanai Y., Kanai-Azuma M., Noce T., Saido T.C., Shiroishi T., Hayashi Y., et al. Identification of two Sox17 messenger RNA isoforms, with and without the high mobility group box region, and their differential expression in mouse spermatogenesis. The Journal of Cell Biology. 133:1996;667-681
10. Ke X., Jia L., Jing H., Liu Y., Zhang Y., Di C. Effects of novel human chemokine-like factor 1 (CKLF1) on bone marrow hematopoietic stem cell/progenitor cell in vitro. Zhonghua Xue Ye Xue Za Zhi. 6:2002;301-303
11. Lee C., Atanelov L., Modrek B., Xing Y. ASAP: the Alternative Splicing Annotation Project. Nucleic Acids Research. 31:2003;101-105
12. Maniatis T., Tasic B. Alternative pre-mRNA splicing and proteome expansion in metazoans. Nature. 418:2002;236-243
13. Modrek B., Resch A., Grasso C., Lee C. Genome-wide detection of alternative splicing in expressed sequences of human genes. Nucleic Acids Research. 9:2001;2850-2859
14. Nemoto Y., Wenk M.R., Watanabe M., Daniell L., Murakami T., Ringstad N., et al. Identification and characterization of a synaptojanin 2 splice isoform predominantly expressed in nerve terminals. The Journal of Biological Chemistry. 276:2001;41133-41142
15. Niino Y.S., Tarou I., Mikiro T. PKCII, a new isoform of protein kinase c specifically expressed in the seminiferous tubules of mouse testis. The Journal of Biological Chemistry. 276:2001;36711-36717
16. Venables J.P. Alternative splicing in the testes. Current Opinion in Genetics & Development. 12:2002;615-619
17. Venables J.P., Eperon I. The roles of RNA-binding proteins in spermatogenesis and male infertility. Current Opinion in Genetics & Development. 9:1999;346-354
18. Walker W.H., Delfino F.J., Habener J.F. RNA processing and the control of spermatogenesis. Frontiers of Hormone Research. 25:1999;34-58
19. Wallin E., Wettergren C., Hedman F., von Heijine G. Fast Needleman-Wunsch scanning of sequence databanks on a massively parallel computer. Computers in Applied Biosciences. 9:1993;117-118
20. Xia D.L., Li X.T., Lou Y.X., Han W.L., Ding P.G., Zhang Y.M., et al. Overexpression of chemokine-like factor 2 promotes the proliferation and survival of C2C12 skeletal muscle cells. Biochimica et Biophysica Acta. 1591:2002;163-173
21. Xu Q., Modrek B., Lee C. Genome-wide detection of tissue-specific alternative splicing in the human transcriptome. Nucleic Acids Research. 30:2002;3754-3766
22. Yukitake H., Furusawa M., Taira T., Iguchi-Ariga S.M., Ariga H. AAT-1, a novel testis-specific AMY-1-binding protein, forms a quaternary complex with AMY-1, A-kinase anchor protein 84, and a regulatory subunit of cAMP-dependent protein kinase and is phosphorylated by its kinase. The Journal of Biological Chemistry. 277:2002;45480-45492