Optimization of randomly amplified polymorphic DNA-polymerase chain reaction for molecular typing of Salmonella enterica serovar Typhi

Revista da Sociedade Brasileira de Medicina Tropical

Volumn 37, Issue 2, 2004, Pages 143-147

  Quintaes, Bianca Ramalho ^a,b   Leal, Nilma Cintra ^a   Reis, Eliane Moura Falavina ^a   Hofer, Ernesto ^a  

^a INSTITUTO OSWALDO CRUZ   (Brazil)

^b STATE UNIVERSITY OF RIO DE JANEIRO   (Brazil)

Author keywords

Brazil; Optimization; RAPD PCR; Salmonella enterica serovar Typhi

Indexed keywords

DNA POLYMERASE; MAGNESIUM CHLORIDE;

ARTICLE; BACTERIUM ISOLATION; BRAZIL; DNA FINGERPRINTING; DNA TEMPLATE; MOLECULAR TYPING; NONHUMAN; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; REPRODUCIBILITY; SALMONELLA ENTERICA; SEROTYPE;

BACTERIA (MICROORGANISMS); SALMONELLA; SALMONELLA ENTERICA; SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHI;

EID: 2442474183     PISSN: 00378682     EISSN: None     Source Type: Journal    
DOI: 10.1590/S0037-86822004000200006     Document Type: Article

References (24)

1. Altwegg M, Hickman-Brenner FW, Farmer III JJ. Ribosomal RNA gene restriction patterns provide increased sensitivity for typing Salmonella typhi strains. The Journal of Infectious Diseases 160: 145-149, 1989.
2. Caetano-Anollés G, Bassam BJ, Gresshoff P. Primer-template interactions during DNA amplification fingerprinting with single arbitrary oligonucleotides. Molecular Genomic Genetics 235: 157-165, 1992.
3. Gruner E, Flepp M, Gabathuler U, Thong K, Altwegg M. Outbreak of typhoid fever in a non-endemic area: comparison of three molecular typing methods. Journal of Microbiologic Methods 28: 179-185, 1987.
4. Hermans PWM, Saha SK, Van Leeuwen WJ, Verbrugh HA, Van Belkum A, Goessens WHF. Molecular typing of Salmonella typhi strains from Dhaka (Bangladesh) and development of DNA probes identifying plasmid-encoded multidrug-resistant isolates. Journal of Clinical Microbiology 34: 1373-1379, 1996.
5. Hilton AC, Banks JG, Penn CW. Random amplification of polymorphic DNA (RAPD) of Salmonella: strain differentiation and characterization of amplified sequences. Journal of Applied Bacteriology 81: 575-584, 1996.
6. Hilton AC, Banks JG, Penn CW. Optimization of RAPD fingerprinting Salmonella. Journal of Applied Bacteriology 24: 243-2483, 1997.
7. Lin AW, Usera MA, Barrett TJ, Goldsby RA. Application of random amplified polymorphic DNA analysis to differentiate strains of Salmonella enteritidis. Journal of Clinical Microbiology 34: 870-876, 1996.
8. Ling JM, Loo NW, Ho YM, Kam KM, Hoa NT, Phi LT, Cheng AF. Molecular methods for the epidemiological typing of Salmonella enterica serotype Typhi from Hong Kong and Vietnam. Journal of Clinical Microbiology 38: 292-300, 2000.
9. Makino S-I, Okada Y, Maruyama T, Kaneko S, Sasakawa C. PCR-based random polymorphic DNA fingerprinting of Yersinia pseudotuberculosis and its practical applications. Journal of Clinical Microbiology 32: 65-69, 1994.
10. Meunier JR, Grimont PAD. Factors affecting reproducibility of random polymorphic DNA fingerprinting. Research Microbiology 144: 373-379, 1993.
11. Nair S, Poh CL, Lim YS, Tay L, Goh KT. Genome fingerprinting of Salmonella typhi by pulsed-field gel electrophoresis for subtyping common phage types. Epidemiological Infectious 113: 391-402, 1994.
12. Navarro F, Llovet T, Echeita MA, Coll P, Aladueña A, Usera MA, Prats G. Molecular typing of Salmonella enterica serovar Typhi. Journal of Clinical Microbiology 34: 2831-2834, 1996.
13. Persing DH. Target selection and optimization of amplification reactions. In: Persing DH, Smith TF, Tenover FC, White TJ (ed) Diagnostic Molecular Microbiology: Principles and Applications, Washington, p. 88-103, 1993.
14. Quintaes BR, Leal NC, Reis EMF, Fonseca EL, Hofer E. Conventional and molecular typing of Salmonella Typhi strains from Brazil. Revista do Instituto de Medicina Tropical de São Paulo 44: 315-319, 2002.
15. Sambrook J, Fritsch EF, Maniatis T. Molecular Cloning. A Laboratory Manual. 2nd edition, Cold Spring Harbour Laboratory Press, New York, p. 1.25-1.28, 1989.
16. Shangkuan Y-H, Lin H-C. Application of random amplified polymorphic DNA analysis to differentiate strains of Salmonella typhi and other Salmonella species. Journal of Applied Microbiology 85: 693-702, 1998.
17. Soto SM, Guerra B, Gozález-Hevia MA, Mendoza MC. Potential of three-way randomly amplified polymorphic DNA analysis as a typing method for twelve Salmonella serotypes. Applied Environmental Microbiology 65: 4830-4836, 1999.
18. Thong KL, Cheong YM, Puthucheary S, Koh CL, Pang T. Epidemiologic analysis of sporadic Salmonella typhi isolates and those from outbreaks by pulsed-field gel electrophoresis. Journal of Clinical Microbiology 32: 1135-1141, 1994.
19. Thong KL, Puthucheary S, Yassin RM, Sudarmono MP, Soewandojo E, Handojo I, Sarasombath S, Pang T. Analysis of Salmonella typhi isolates from Southeast Asia by pulsed-field gel electrophoresis. Journal of Clinical Microbiology 33: 1938-1941, 1995.
20. Welsh J, McClelland M. Genomic fingerprinting using arbitrarily primed PCR and a matrix of pairwise combinations of primers. Nucleic Acids Research 19: 5275-5279, 1991.
21. Welsh J, Petersen C, McClelland M. Polymorphisms generated by arbitrarily primed PCR in the mouse: application to strain identification and genetic mapping. Nucleic Acids Research 19: 303-306, 1991.
22. Williams JGK, Kubelik AR, Livak KJ, Rafalski JA, Tingey SV. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18: 6531-6535, 1990.
23. Wong NACS, Linton CJ, Jalal H, Millar MR 1994. Randomly amplified polymorphic DNA typing: a useful tool for rapid epidemiological typing of Klebsiella pneumoniae. Epidemiological Infectious 113: 445-454, 1994.
24. Yu K, Pauls KP. Optimization of the PCR program for RAPD analysis. Nucleic Acids Research 20: 2606, 1992.