X-ray structure of the γ-subunit of a dissimilatory sulfite reductase: Fixed and flexible C-terminal arms

FEBS Letters

Volumn 579, Issue 21, 2005, Pages 4600-4604

  Mander, Gerd J ^a   Weiss, Manfred S ^b   Hedderich, Reiner ^a   Kahnt, Jörg ^a   Ermler, Ulrich ^c   Warkentin, Eberhard ^c  

^a MAX PLANCK INSTITUTE FOR TERRESTRIAL MICROBIOLOGY   (Germany)

^b DESY   (Germany)

^c MAX PLANCK INSTITUTE OF BIOPHYSICS   (Germany)

Author keywords

Archaeoglobus fulgidus; C terminal arm; Conformational flexibility; Disulfide bond; Sulfite reductase

Indexed keywords

BACTERIAL ENZYME; CYSTEINE; SULFITE REDUCTASE; TERT BUTYL HYDROPEROXIDE;

ARCHAEOGLOBUS FULGIDUS; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; CRYSTAL STRUCTURE; CRYSTALLIZATION; DISULFIDE BOND; ENZYME ANALYSIS; ENZYME CONFORMATION; ENZYME STRUCTURE; ENZYME SUBUNIT; NONHUMAN; OXIDATION REDUCTION REACTION; PRIORITY JOURNAL; PROTEIN FOLDING; PYROBACULUM; SEQUENCE HOMOLOGY; STRUCTURAL PROTEOMICS; STRUCTURE ANALYSIS; X RAY ANALYSIS;

AMINO ACID SEQUENCE; ARCHAEAL PROTEINS; ARCHAEOGLOBUS FULGIDUS; CRYSTALLOGRAPHY, X-RAY; HYDROGENSULFITE REDUCTASE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES ACTING ON SULFUR GROUP DONORS; PROTEIN STRUCTURE, TERTIARY; PROTEIN SUBUNITS; SEQUENCE ALIGNMENT;

ARCHAEOGLOBUS FULGIDUS; PYROBACULUM AEROPHILUM;

EID: 24044531934     PISSN: 00145793     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.febslet.2005.07.029     Document Type: Article

References (20)

1. D.A. Stahl, S. Fishbain, M. Klein, B.J. Baker, and M. Wagner Origins and diversification of sulfate-respiring microorganisms Antonie Van Leeuwenhoek 81 2002 189 195
2. S.J. Marritt, and W.F. Hagen Dissimilatory sulfite reductase revisited. The desulfoviridin molecule does contain 20 iron ions, extensively demetallated sirohaem, and an S = 9/2 iron-sulfur cluster Eur. J. Biochem. 238 1996 724 727
3. J. Steuber, A.F. Arendsen, W.R. Hagen, and P.M.H. Kroneck Molecular properties of the dissimilatory sulfite reductase from Desulfovibrio desulfuricans (Essex) and comparison with the enzyme from Desulfovibrio vulgaris (Hildenborough) Eur. J. Biochem. 3 1995 873 879
4. C. Dahl, N.M. Kredlich, R. Deutzmann, and H.G. Trüper Dissimilatory sulphite reductase from Archaeoglobus fulgidus: physico-chemical properties of the enzyme and cloning, sequencing and analysis of the reductase genes J. Gen. Microbiol. 139 1993 1817 1828
5. A.S. Pott, and C. Dahl Sirohaem sulfite reductase and other proteins encoded by genes at the dsr-locus of Chromatium vinosum are involved in the oxidation of intracellular sulfur Microbiology 144 1998 1881 1894
6. A.J. Pierik, M.G. Duyvis, J.M.L.M. van Helvoort, R.B.G. Wolbert, and W.R. Hagen The third subunit of desulfoviridin-type dissimilatory sulfite reductases Eur. J. Biochem. 205 1992 111 115
7. M. Molitor, C. Dahl, I. Molitor, U. Schafer, N. Speich, R. Huber, R. Deutzmann, and H.G. Trüper A dissimilatory sirohaem-sulfite-reductase-type protein from the hyperthermophilic archaeon Pyrobaculum islandicum Microbiology 144 1998 529 541
8. H.P. Klenk, R.A. Clayton, J.F. Tomb, O. White, K.E. Nelson, K.A. Ketchum, R.J. Dodson, M. Gwinn, E.K. Hickey, J.D. Peterson, D.L. Richardson, A.R. Kerlavage, D.E. Graham, N.C. Kyrpides, R.D. Fleischmann, J. Quackenbush, N.H. Lee, G.G. Sutton, S. Gill, E.F. Kirkness, B.A. Dougherty, K. McKenney, M.D. Adams, B. Loftus, and J.C. Venter The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus Nature 390 1997 364 370
9. Kroder, M. (1995) Biochemie und Mikrobiologie der Reduktion von Trithionat und Thiosulfat in dem sulfatreduzierenden Bakterium Desulfovibrio desulfuricans. Dissertation, Universität Konstanz, Konstanz.
10. J.R. Cort, S. Mariappan, C.-Y. Kim, M.S. Park, T.S. Peat, G.S. Waldo, T.C. Terwilliger, and M.A. Kennedy Solution structure of Pyrobaculum aerophilum DsrC, an archaeal homologue of the gamma subunit of dissimilatory sulfite reductase Eur. J. Biochem. 268 2001 5842 5850
11. J. Sambrook, E.F. Fritsch, and T.L. Maniatis Molecular Cloning: A Laboratory Manual 1989 Cold Spring Harbour Press Cold Spring Harbour, NY, USA
12. M.S. Weiss, G. Mander, R. Hedderich, K. Diederichs, U. Ermler, and E. Warkentin Determination of a novel structure by a combination of long-wavelength sulfur phasing and radiation-damage-induced phasing Acta Crystallogr. D 60 2004 686 695
13. Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Macro. Crystallogr. 276 1997 307 326
14. C.R. Kissinger, D.K. Gehlhaar, and D.B. Vogel Rapid automated molecular replacement by evolutionary search Acta Crystallogr. D 55 1999 484 491
15. A.T. Brünger, P.D. Adams, G.M. Clore, W.L. DeLano, P. Gros, R.W. Grosse-Kunstleve, J.S. Jiang, J. Kuszewski, M. Nilges, and N.S. Pannu Crystallography & NMR system: a new software suite for macromolecular structure determination Acta Crystallogr. D 54 1998 905 921
16. T.A. Jones, J.Y. Zou, S.W. Cowan, and M. Kjeldgaard Improved methods for building protein models in electron density maps and the location of errors in these models Acta Crystallogr. A 47 1991 110 119
17. G.D. Murshudov, A.A. Vagin, and E.J. Dodson Refinement of macromolecular structures by the maximum-likelihood method Acta Crystallogr. D 53 1997 240 255
18. R.A. Laskowski, M.W. MacArthur, D.S. Moss, and J.M. Thornton PROCHECK: a program to check the stereochemical quality of protein structures J. Appl. Crystallogr. 26 1993 283 291
19. R.M. Esnouf Further additions to MolScript version 1.4, including reading and contouring of electron-density maps Acta Crystallogr. Sect. D 55 1999 938 940
20. E.A. Merritt, and M.E.P. Murphy Raster3d Version-2.0 - a program for photorealistic molecular graphics Acta Crystallogr. D 50 1994 869 873