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Volumn 6 B, Issue 8, 2005, Pages 743-755

DNA sequence representation by trianders and determinative degree of nucleotides

Author keywords

Analysis DNA sequences; Determinative degree; DNA walk; Dystrophin; Nucleotide; Triander

Indexed keywords

CLASSIFICATION (OF INFORMATION); PHYSICAL PROPERTIES; PROTEINS; STATISTICAL METHODS; THREE DIMENSIONAL;

EID: 24044508263     PISSN: 10093095     EISSN: None     Source Type: Journal    
DOI: 10.1631/jzus.2005.B0743     Document Type: Article
Times cited : (6)

References (57)
  • 2
    • 0042567759 scopus 로고
    • Random two-component one-dimensional Ising model for heteropolymer melting
    • Azbel, M.Y., 1973. Random two-component one-dimensional Ising model for heteropolymer melting. Phys. Rev. Lett., 31: 589-592.
    • (1973) Phys. Rev. Lett. , vol.31 , pp. 589-592
    • Azbel, M.Y.1
  • 3
    • 0012663279 scopus 로고
    • Universality of DNA statistical structure
    • Azbel, M.Y., 1995. Universality of DNA statistical structure. Phys. Rev. Lett., 75: 168-171.
    • (1995) Phys. Rev. Lett. , vol.75 , pp. 168-171
    • Azbel, M.Y.1
  • 4
    • 0000971349 scopus 로고    scopus 로고
    • Codon and nucleotide assignments in a supersymmetric model of the genetic code
    • Bashford, J.D., Tsohantjis, I., Jarvis, P.D., 1997. Codon and nucleotide assignments in a supersymmetric model of the genetic code. Phys. Lett., A233: 481-488.
    • (1997) Phys. Lett. , vol.A233 , pp. 481-488
    • Bashford, J.D.1    Tsohantjis, I.2    Jarvis, P.D.3
  • 5
    • 24044480207 scopus 로고    scopus 로고
    • Self-similarity limits of genomic signatures
    • Weizmann Inst. Science Preprint, Cond-mat/0210038, Rehovot
    • Bergmann, S., Ihmels, J., Barkai, N., 2002. Self-similarity Limits of Genomic Signatures. Weizmann Inst. Science Preprint, Cond-mat/0210038, Rehovot, p.12.
    • (2002) , pp. 12
    • Bergmann, S.1    Ihmels, J.2    Barkai, N.3
  • 6
    • 0021810948 scopus 로고
    • The mosaic genome of warm-blooded vertebtates
    • Bernardi, G., Olofsson, B., Filipski, J., 1985. The mosaic genome of warm-blooded vertebtates. Science, 228: 953-958.
    • (1985) Science , vol.228 , pp. 953-958
    • Bernardi, G.1    Olofsson, B.2    Filipski, J.3
  • 7
    • 0000428193 scopus 로고
    • Global fractal dimension of human DNA sequences treated as pseudorandom walks
    • Berthelsen, C.L., Glazier, J.A., Skolnick, M.H., 1992. Global fractal dimension of human DNA sequences treated as pseudorandom walks. Phys. Rev., A45: 8902-8913.
    • (1992) Phys. Rev. , vol.A45 , pp. 8902-8913
    • Berthelsen, C.L.1    Glazier, J.A.2    Skolnick, M.H.3
  • 8
    • 2742544378 scopus 로고    scopus 로고
    • Application of vector space techniques to DNA
    • Bhry, T., Cziryk, A., Vicsek, T., Major, B., 1998. Application of vector space techniques to DNA. Fractals, 6: 205-210.
    • (1998) Fractals , vol.6 , pp. 205-210
    • Bhry, T.1    Cziryk, A.2    Vicsek, T.3    Major, B.4
  • 10
    • 0023251888 scopus 로고
    • A statistical analysis of nucleotide sequences of introns and exons in human genes
    • Bulmer, M., 1987. A statistical analysis of nucleotide sequences of introns and exons in human genes. Mol. Biol. Evol., 4: 395-405.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 395-405
    • Bulmer, M.1
  • 11
    • 0031641680 scopus 로고    scopus 로고
    • The effect of DNA phase structure on DNA walks
    • Cebrat, S., Dudek, M.R., 1998. The effect of DNA phase structure on DNA walks. Eur. Phys. J., 3: 271-276.
    • (1998) Eur. Phys. J. , vol.3 , pp. 271-276
    • Cebrat, S.1    Dudek, M.R.2
  • 12
    • 24044540918 scopus 로고    scopus 로고
    • Information weights of nucleotides in DNA sequences
    • Inst. Microbiology Preprint, Cond-mat/0301371, Wroclaw
    • Dudek, M., Cebrat, S., Kowalczuk, M., Mackiewicz, P., Nowicka, A., Mackiewicz, D., Dudkiewicz, M., 2002. Information Weights of Nucleotides in DNA Sequences. Inst. Microbiology Preprint, Cond-mat/0301371, Wroclaw, p.8.
    • (2002) , pp. 8
    • Dudek, M.1    Cebrat, S.2    Kowalczuk, M.3    Mackiewicz, P.4    Nowicka, A.5    Mackiewicz, D.6    Dudkiewicz, M.7
  • 13
    • 24044498197 scopus 로고    scopus 로고
    • Symmetry analysis of genetic code and determinative degree
    • Duplij, D., Duplij, S., 2000. Symmetry analysis of genetic code and determinative degree. Biophysical Bull. Kharkov Univ., 488: 60-70.
    • (2000) Biophysical Bull. Kharkov Univ. , vol.488 , pp. 60-70
    • Duplij, D.1    Duplij, S.2
  • 14
    • 24044522423 scopus 로고    scopus 로고
    • Determinative degree and nucleotide content of DNA strands
    • Duplij, D., Duplij, S., 2001. Determinative degree and nucleotide content of DNA strands. Biophysical Bull. Kharkov Univ., 525: 86-92.
    • (2001) Biophysical Bull. Kharkov Univ. , vol.525 , pp. 86-92
    • Duplij, D.1    Duplij, S.2
  • 16
    • 0026758856 scopus 로고
    • Base compositional structure of genomes
    • Fickett, J.W., Torney, D.C., Wolf, D.R., 1992. Base compositional structure of genomes. Genomics, 13: 1056-1064.
    • (1992) Genomics , vol.13 , pp. 1056-1064
    • Fickett, J.W.1    Torney, D.C.2    Wolf, D.R.3
  • 18
    • 24044525777 scopus 로고    scopus 로고
    • Lie superalgebras and the multiplet structure of the genetic code I: Codon representations
    • Inst. de Mat. e Estat, Preprint, Math-ph/9808001, Sao Paulo
    • Forger, M., Sachse, S., 1998. Lie Superalgebras and the Multiplet Structure of the Genetic Code I: Codon Representations. Inst. de Mat. e Estat, Preprint, Math-ph/9808001, Sao Paulo, p.23.
    • (1998) , pp. 23
    • Forger, M.1    Sachse, S.2
  • 19
    • 0030976320 scopus 로고    scopus 로고
    • Strand asymmetries in DNA evolution
    • Francino, M.P., Ochman, H., 1997. Strand asymmetries in DNA evolution. Trends Genet., 13: 240-245.
    • (1997) Trends Genet. , vol.13 , pp. 240-245
    • Francino, M.P.1    Ochman, H.2
  • 20
    • 0347029794 scopus 로고    scopus 로고
    • A crystal base for the genetic code
    • Frappat, L., Sciarrino, A., Sorba, P., 1998. A crystal base for the genetic code. Phys. Lett., A250: 214-221.
    • (1998) Phys. Lett. , vol.A250 , pp. 214-221
    • Frappat, L.1    Sciarrino, A.2    Sorba, P.3
  • 21
    • 0022428479 scopus 로고
    • Simpler DNA sequence representations
    • Gates, M.A., 1985. Simpler DNA sequence representations. Nature, 316: 219.
    • (1985) Nature , vol.316 , pp. 219
    • Gates, M.A.1
  • 23
    • 0022428361 scopus 로고
    • Novel DNA sequence representations
    • Hamori, E., 1985. Novel DNA sequence representations. Nature, 314: 585-586.
    • (1985) Nature , vol.314 , pp. 585-586
    • Hamori, E.1
  • 24
    • 0001523629 scopus 로고
    • Model for the evolution of the genetic code
    • Hornos, J.E.M., Hornos, Y.M.M., 1993. Model for the evolution of the genetic code. Phys. Rev. Lett., 71: 4401-4404.
    • (1993) Phys. Rev. Lett. , vol.71 , pp. 4401-4404
    • Hornos, J.E.M.1    Hornos, Y.M.M.2
  • 25
    • 1542563376 scopus 로고
    • Rhombic version of genetic vocabulary based on complementary of encoding nucleotides
    • Karasev, V.A., 1976. Rhombic version of genetic vocabulary based on complementary of encoding nucleotides. Vest. Leningr. Univ., 1: 93-97.
    • (1976) Vest. Leningr. Univ. , vol.1 , pp. 93-97
    • Karasev, V.A.1
  • 26
    • 0031159018 scopus 로고    scopus 로고
    • Topological structure of the genetic code
    • Karasev, V.A., Sorokin, S.G., 1997. Topological structure of the genetic code. Genetika, 33: 744-751.
    • (1997) Genetika , vol.33 , pp. 744-751
    • Karasev, V.A.1    Sorokin, S.G.2
  • 28
    • 0012534043 scopus 로고    scopus 로고
    • DNA asymmetry and replicational mutational pressure
    • Kowalczuk, M., Mackiewicz, P., Mackiewicz, D., 2001a. DNA asymmetry and replicational mutational pressure. J. Appl. Genet., 42: 553-577.
    • (2001) J. Appl. Genet. , vol.42 , pp. 553-577
    • Kowalczuk, M.1    Mackiewicz, P.2    Mackiewicz, D.3
  • 30
    • 0003804881 scopus 로고
    • Wiley and Sons, New York
    • Lewin, B., 1983. Genes. Wiley and Sons, New York.
    • (1983) Genes
    • Lewin, B.1
  • 31
    • 0029805251 scopus 로고    scopus 로고
    • A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria
    • Lobry, J.R., 1996. A simple vectorial representation of DNA sequences for the detection of replication origins in bacteria. Biochimie, 78: 323-326.
    • (1996) Biochimie , vol.78 , pp. 323-326
    • Lobry, J.R.1
  • 32
    • 0001366379 scopus 로고    scopus 로고
    • Statistical correlation of nucleotides in a DNA sequence
    • Luo, L., Lee, W., Jia, L., Ji, F., Tsai, L., 1998. Statistical correlation of nucleotides in a DNA sequence. Phys. Rev., E58: 861-871.
    • (1998) Phys. Rev. , vol.E58 , pp. 861-871
    • Luo, L.1    Lee, W.2    Jia, L.3    Ji, F.4    Tsai, L.5
  • 33
    • 0019588890 scopus 로고
    • On the nature of biological code and its possible evolution
    • Maslov, S.Y., 1981. On the nature of biological code and its possible evolution. Biophysics (Moscow), 26: 632-635.
    • (1981) Biophysics (Moscow) , vol.26 , pp. 632-635
    • Maslov, S.Y.1
  • 34
    • 0342614926 scopus 로고    scopus 로고
    • Codon usage tabulated from international DNA sequence databases: Status for the year 2000
    • Nakamura, Y., Gojobori, T., Ikemura, T., 2000. Codon usage tabulated from international DNA sequence databases: Status for the year 2000. Nucl. Acds. Res., 28: 292.
    • (2000) Nucl. Acds. Res. , vol.28 , pp. 292
    • Nakamura, Y.1    Gojobori, T.2    Ikemura, T.3
  • 35
    • 0030770590 scopus 로고    scopus 로고
    • Graphs in sequence spaces: A review of statistical geometry
    • Nieselt-Struwe, K., 1997. Graphs in sequence spaces: A review of statistical geometry. Biophys. Chem., 66: 111-131.
    • (1997) Biophys. Chem. , vol.66 , pp. 111-131
    • Nieselt-Struwe, K.1
  • 36
    • 0001071027 scopus 로고
    • On the topology of real plane algebraic curves
    • Petrovskiy, I.G., 1938. On the topology of real plane algebraic curves. Ann. Math., 39: 189-209.
    • (1938) Ann. Math. , vol.39 , pp. 189-209
    • Petrovskiy, I.G.1
  • 38
    • 0007447462 scopus 로고
    • Complex orientation of real algebraic curves
    • Rokhlin, V.A., 1974. Complex orientation of real algebraic curves. Func. Anal. Appl., 8: 71-75.
    • (1974) Func. Anal. Appl. , vol.8 , pp. 71-75
    • Rokhlin, V.A.1
  • 39
    • 0014355152 scopus 로고
    • Sistematics of codons in the genetic code
    • Rumer, U.D., 1968. Sistematics of codons in the genetic code. DAN SSSR, 183: 225-226.
    • (1968) DAN SSSR , vol.183 , pp. 225-226
    • Rumer, U.D.1
  • 40
    • 0014555238 scopus 로고
    • On codon sistematics in the genetic code
    • Rumer, U.D., 1969. On codon sistematics in the genetic code. DAN SSSR, 187: 937-938.
    • (1969) DAN SSSR , vol.187 , pp. 937-938
    • Rumer, U.D.1
  • 41
    • 24044488465 scopus 로고    scopus 로고
    • Genetic code as a system
    • Rumer, U.D., 2000. Genetic code as a system. Soros Educational J., 6: 15-22.
    • (2000) Soros Educational J. , vol.6 , pp. 15-22
    • Rumer, U.D.1
  • 42
    • 0028823008 scopus 로고
    • Hydration of DNA bases is local
    • Schneider, B., Berman, H.B., 1995. Hydration of DNA bases is local. Biophysical J., 69: 2661-2669.
    • (1995) Biophysical J. , vol.69 , pp. 2661-2669
    • Schneider, B.1    Berman, H.B.2
  • 43
  • 45
    • 0029998770 scopus 로고    scopus 로고
    • Base stacking and hydrogen bonding in protonated cytosine dimer: The role of molecular ion-dipole and induction interactions
    • Sponer, J., Leszczynski, J., Vetterl, V., Hobza, P., 1996. Base stacking and hydrogen bonding in protonated cytosine dimer: The role of molecular ion-dipole and induction interactions. J. Biomolecular Structure and Dynamics, 13: 695-705.
    • (1996) J. Biomolecular Structure and Dynamics , vol.13 , pp. 695-705
    • Sponer, J.1    Leszczynski, J.2    Vetterl, V.3    Hobza, P.4
  • 47
    • 0028922156 scopus 로고
    • Intrastrand parity rules of DNA base composition and usage biases in synonymous codons
    • Sueoka, N., 1995. Intrastrand parity rules of DNA base composition and usage biases in synonymous codons. J. Mol. Evol., 40: 318-325.
    • (1995) J. Mol. Evol. , vol.40 , pp. 318-325
    • Sueoka, N.1
  • 48
    • 0022144316 scopus 로고
    • A sence of the genetic code: Reconstruction of the prebiologocal evolutin stage
    • Sukhodolec, V.V., 1985. A sence of the genetic code: Reconstruction of the prebiologocal evolutin stage. Genetika, 21: 1589-1599.
    • (1985) Genetika , vol.21 , pp. 1589-1599
    • Sukhodolec, V.V.1
  • 49
    • 0033548562 scopus 로고    scopus 로고
    • The statistical properties of human coding sequences
    • Torney, D.C., Whittaker, C.C., Xie, G., 1999. The statistical properties of human coding sequences. J. Mol. Biol., 286: 1461-1469.
    • (1999) J. Mol. Biol. , vol.286 , pp. 1461-1469
    • Torney, D.C.1    Whittaker, C.C.2    Xie, G.3
  • 50
    • 0003523790 scopus 로고
    • Quantum invariants of knots and 3-manifolds
    • W. de Greuter, Berlin
    • Turaev, V.G., 1994. Quantum Invariants of Knots and 3-Manifolds. W. de Greuter, Berlin.
    • (1994)
    • Turaev, V.G.1
  • 51
    • 0025916537 scopus 로고
    • DNA strand asymmetry
    • Wu, C., 1991. DNA strand asymmetry. Nature, 352: 114.
    • (1991) Nature , vol.352 , pp. 114
    • Wu, C.1
  • 52
    • 24044537794 scopus 로고    scopus 로고
    • Self-similarity limits of genomic signatures
    • Inst. Mechanics Preprint, Cond-mat/0212091, Beijing
    • Wu, Z.B., 2002. Self-similarity limits of genomic signatures. Inst. Mechanics Preprint, Cond-mat/0212091, Beijing, p.12.
    • (2002) , pp. 12
    • Wu, Z.B.1
  • 53
    • 0037318192 scopus 로고    scopus 로고
    • Two alternative exons can result from activation of the cryptic splice acceptor site deep within intron 2 of the dystrophin gene in a patient with as yet asymptomatic dystrophinopathy
    • Yagi, M., Takeshima, Y., Wada, H., Nakamura, H., Matsuo, M., 2003. Two alternative exons can result from activation of the cryptic splice acceptor site deep within intron 2 of the dystrophin gene in a patient with as yet asymptomatic dystrophinopathy. Hum. Genet., 267: 164-170.
    • (2003) Hum. Genet. , vol.267 , pp. 164-170
    • Yagi, M.1    Takeshima, Y.2    Wada, H.3    Nakamura, H.4    Matsuo, M.5
  • 55
    • 0031558402 scopus 로고    scopus 로고
    • A symmetrical theory of DNA sequences and its applications
    • Zhang, C.T., 1997. A symmetrical theory of DNA sequences and its applications. J. Theor. Biol., 187: 297-306.
    • (1997) J. Theor. Biol. , vol.187 , pp. 297-306
    • Zhang, C.T.1
  • 56
    • 27944459606 scopus 로고
    • In spectroscopy of biological molecules
    • Societa Editrice Esculapio, Bologna
    • Zheltovsky, N.V., Samoilenko, S.A., Govorun, D.N., 1989. In Spectroscopy of Biological Molecules. Societa Editrice Esculapio, Bologna, p. 159-172.
    • (1989) , pp. 159-172
    • Zheltovsky, N.V.1    Samoilenko, S.A.2    Govorun, D.N.3


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