메뉴 건너뛰기




Volumn 228, Issue 1-2, 2005, Pages 71-81

High-resolution cDNA microarray-based comparative genomic hybridization analysis in neuroblastoma

Author keywords

Amplification; Array CGH; DNA copy number; Genomic alteration; Microarray; MYCN; Neuroblastoma; Tumor evolution

Indexed keywords

COMPLEMENTARY DNA;

EID: 23944524790     PISSN: 03043835     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.canlet.2004.12.056     Document Type: Review
Times cited : (12)

References (50)
  • 1
    • 0037366067 scopus 로고    scopus 로고
    • Neuroblastoma: Biological insights into a clinical enigma
    • G.M. Brodeur Neuroblastoma: biological insights into a clinical enigma Nat. Rev. Cancer 3 2003 203 216
    • (2003) Nat. Rev. Cancer , vol.3 , pp. 203-216
    • Brodeur, G.M.1
  • 3
    • 0030966604 scopus 로고    scopus 로고
    • Comparative genomic hybridization (CGH) analysis of neuroblastomas - An important methodological approach in paediatric tumour pathology
    • C. Brinkschmidt, H. Christiansen, H.J. Terpe, R. Simon, W. Boecker, F. Lampert, and S. Stoerkel Comparative genomic hybridization (CGH) analysis of neuroblastomas - an important methodological approach in paediatric tumour pathology J. Pathol. 181 1997 394 400
    • (1997) J. Pathol. , vol.181 , pp. 394-400
    • Brinkschmidt, C.1    Christiansen, H.2    Terpe, H.J.3    Simon, R.4    Boecker, W.5    Lampert, F.6    Stoerkel, S.7
  • 4
    • 0035283744 scopus 로고    scopus 로고
    • Comparative genomic hybridization (CGH) analysis of stage 4 neuroblastoma reveals high frequency of 11q deletion in tumors lacking MYCN amplification
    • D. Plantaz, J. Vandesompele, N. Van Roy, M. Lastowska, N. Bown, and V. Combaret Comparative genomic hybridization (CGH) analysis of stage 4 neuroblastoma reveals high frequency of 11q deletion in tumors lacking MYCN amplification Int. J. Cancer 91 2001 680 686
    • (2001) Int. J. Cancer , vol.91 , pp. 680-686
    • Plantaz, D.1    Vandesompele, J.2    Van Roy, N.3    Lastowska, M.4    Bown, N.5    Combaret, V.6
  • 6
    • 0037308543 scopus 로고    scopus 로고
    • Combined 24-color karyotyping and comparative genomic hybridization analysis indicates predominant rearrangements of early replicating chromosome regions in neuroblastoma
    • G. Schleiermacher, I. Janoueix-Lerosey, V. Combaret, J. Derre, J. Couturier, A. Aurias, and O. Delattre Combined 24-color karyotyping and comparative genomic hybridization analysis indicates predominant rearrangements of early replicating chromosome regions in neuroblastoma Cancer Genet. Cytogenet. 141 2003 32 42
    • (2003) Cancer Genet. Cytogenet. , vol.141 , pp. 32-42
    • Schleiermacher, G.1    Janoueix-Lerosey, I.2    Combaret, V.3    Derre, J.4    Couturier, J.5    Aurias, A.6    Delattre, O.7
  • 8
    • 0030939571 scopus 로고    scopus 로고
    • Comparative genomic hybridization study of primary neuroblastoma tumors. United Kingdom Children's Cancer Study Group
    • M. Lastowska, E. Nacheva, A. McGuckin, A. Curtis, C. Grace, A. Pearson, and N. Bown Comparative genomic hybridization study of primary neuroblastoma tumors. United Kingdom Children's Cancer Study Group Genes Chromosomes Cancer 18 1997 162 169
    • (1997) Genes Chromosomes Cancer , vol.18 , pp. 162-169
    • Lastowska, M.1    Nacheva, E.2    McGuckin, A.3    Curtis, A.4    Grace, C.5    Pearson, A.6    Bown, N.7
  • 11
    • 17344371740 scopus 로고    scopus 로고
    • High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
    • D. Pinkel, R. Segraves, D. Sudar, S. Clark, I. Poole, and D. Kowbel High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nat. Genet. 20 1998 207 211
    • (1998) Nat. Genet. , vol.20 , pp. 207-211
    • Pinkel, D.1    Segraves, R.2    Sudar, D.3    Clark, S.4    Poole, I.5    Kowbel, D.6
  • 14
    • 9144245019 scopus 로고    scopus 로고
    • CDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma
    • Q.R. Chen, S. Bilke, J.S. Wei, C.C. Whiteford, N. Cenacchi, and A.L. Krasnoselsky cDNA array-CGH profiling identifies genomic alterations specific to stage and MYCN-amplification in neuroblastoma BioMed Cent Genomics 5 2004 70
    • (2004) BioMed Cent Genomics , vol.5 , pp. 70
    • Chen, Q.R.1    Bilke, S.2    Wei, J.S.3    Whiteford, C.C.4    Cenacchi, N.5    Krasnoselsky, A.L.6
  • 15
    • 16344388209 scopus 로고    scopus 로고
    • Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays
    • S. Bilke, Q.R. Chen, C.C. Whiteford, and J. Khan Detection of low level genomic alterations by comparative genomic hybridization based on cDNA micro-arrays Bioinformatics 21 2005 1138 1145
    • (2005) Bioinformatics , vol.21 , pp. 1138-1145
    • Bilke, S.1    Chen, Q.R.2    Whiteford, C.C.3    Khan, J.4
  • 17
    • 0037738895 scopus 로고    scopus 로고
    • Profiling breast cancer by array CGH
    • D.G. Albertson Profiling breast cancer by array CGH Breast Cancer Res. Treat. 78 2003 289 298
    • (2003) Breast Cancer Res. Treat. , vol.78 , pp. 289-298
    • Albertson, D.G.1
  • 18
    • 13844250828 scopus 로고    scopus 로고
    • Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors
    • J.R. Pollack, T. Sorlie, C.M. Perou, C.A. Rees, S.S. Jeffrey, and P.E. Lonning Microarray analysis reveals a major direct role of DNA copy number alteration in the transcriptional program of human breast tumors Proc. Natl Acad. Sci. USA 99 2002 12963 12968
    • (2002) Proc. Natl Acad. Sci. USA , vol.99 , pp. 12963-12968
    • Pollack, J.R.1    Sorlie, T.2    Perou, C.M.3    Rees, C.A.4    Jeffrey, S.S.5    Lonning, P.E.6
  • 20
    • 3142550122 scopus 로고    scopus 로고
    • High-resolution global profiling of genomic alterations with long oligonucleotide microarray
    • C. Brennan, Y. Zhang, C. Leo, B. Feng, C. Cauwels, and A.J. Aguirre High-resolution global profiling of genomic alterations with long oligonucleotide microarray Cancer Res. 64 2004 4744 4748
    • (2004) Cancer Res. , vol.64 , pp. 4744-4748
    • Brennan, C.1    Zhang, Y.2    Leo, C.3    Feng, B.4    Cauwels, C.5    Aguirre, A.J.6
  • 21
    • 2642556276 scopus 로고    scopus 로고
    • High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides
    • B. Carvalho, E. Ouwerkerk, G.A. Meijer, and B. Ylstra High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides J. Clin. Pathol. 57 2004 644 646
    • (2004) J. Clin. Pathol. , vol.57 , pp. 644-646
    • Carvalho, B.1    Ouwerkerk, E.2    Meijer, G.A.3    Ylstra, B.4
  • 22
    • 10744230160 scopus 로고    scopus 로고
    • High-resolution analysis of DNA copy number using oligonucleotide microarrays
    • G.R. Bignell, J. Huang, J. Greshock, A. Watt, A. Butler, and S. West High-resolution analysis of DNA copy number using oligonucleotide microarrays Genome Res. 14 2004 287 295
    • (2004) Genome Res. , vol.14 , pp. 287-295
    • Bignell, G.R.1    Huang, J.2    Greshock, J.3    Watt, A.4    Butler, A.5    West, S.6
  • 23
    • 0037250601 scopus 로고    scopus 로고
    • Chromosomal localization of DNA amplifications in neuroblastoma tumors using cDNA microarray comparative genomic hybridisation
    • B. Beheshti, I. Braude, P. Marrano, P. Thorner, M. Zielenska, and J.A. Squire Chromosomal localization of DNA amplifications in neuroblastoma tumors using cDNA microarray comparative genomic hybridisation Neoplasia 5 2003 53 62
    • (2003) Neoplasia , vol.5 , pp. 53-62
    • Beheshti, B.1    Braude, I.2    Marrano, P.3    Thorner, P.4    Zielenska, M.5    Squire, J.A.6
  • 24
    • 2442697761 scopus 로고    scopus 로고
    • Combined subtractive cDNA cloning and array CGH: An efficient approach for identification of overexpressed genes in DNA amplicons
    • K. De Preter, F. Pattyn, G. Berx, K. Strumane, B. Menten, and F. Van Roy Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons BioMed Cent Genomics 5 2004 11
    • (2004) BioMed Cent Genomics , vol.5 , pp. 11
    • De Preter, K.1    Pattyn, F.2    Berx, G.3    Strumane, K.4    Menten, B.5    Van Roy, F.6
  • 25
    • 0024375673 scopus 로고
    • Amplification of N-myc and ornithine decarboxylase genes in human neuroblastoma and hydroxyurea-resistant hamster cell lines
    • P.N. Tonin, H. Yeger, R.L. Stallings, P.R. Srinivasan, and W.H. Lewis Amplification of N-myc and ornithine decarboxylase genes in human neuroblastoma and hydroxyurea-resistant hamster cell lines Oncogene 4 1989 1117
    • (1989) Oncogene , vol.4 , pp. 1117
    • Tonin, P.N.1    Yeger, H.2    Stallings, R.L.3    Srinivasan, P.R.4    Lewis, W.H.5
  • 26
    • 18244397746 scopus 로고    scopus 로고
    • Quantification of MYCN, DDX1, and NAG gene copy number in neuroblastoma using a real-time quantitative PCR assay
    • K. De Preter, F. Speleman, V. Combaret, J. Lunec, G. Laureys, and B.H. Eussen Quantification of MYCN, DDX1, and NAG gene copy number in neuroblastoma using a real-time quantitative PCR assay Mod. Pathol. 15 2002 159 166
    • (2002) Mod. Pathol. , vol.15 , pp. 159-166
    • De Preter, K.1    Speleman, F.2    Combaret, V.3    Lunec, J.4    Laureys, G.5    Eussen, B.H.6
  • 28
    • 0033711857 scopus 로고    scopus 로고
    • The homeobox gene MEIS1 is amplified in IMR-32 and highly expressed in other neuroblastoma cell lines
    • T.A. Jones, R.H. Flomen, G. Senger, D. Nizetic, and D. Sheer The homeobox gene MEIS1 is amplified in IMR-32 and highly expressed in other neuroblastoma cell lines Eur. J. Cancer 36 2000 2368 2374
    • (2000) Eur. J. Cancer , vol.36 , pp. 2368-2374
    • Jones, T.A.1    Flomen, R.H.2    Senger, G.3    Nizetic, D.4    Sheer, D.5
  • 29
    • 0026881782 scopus 로고
    • Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc
    • B.C. Armstrong, and G.W. Krystal Isolation and characterization of complementary DNA for N-cym, a gene encoded by the DNA strand opposite to N-myc Cell Growth Differ. 3 1992 385 390
    • (1992) Cell Growth Differ. , vol.3 , pp. 385-390
    • Armstrong, B.C.1    Krystal, G.W.2
  • 30
    • 0033531259 scopus 로고    scopus 로고
    • Coamplification of a novel gene, NAG, with the N-myc gene in neuroblastoma
    • K. Wimmer, X.X. Zhu, B.J. Lamb, R. Kuick, P.F. Ambros, and H. Kovar Coamplification of a novel gene, NAG, with the N-myc gene in neuroblastoma Oncogene 18 1999 233 238
    • (1999) Oncogene , vol.18 , pp. 233-238
    • Wimmer, K.1    Zhu, X.X.2    Lamb, B.J.3    Kuick, R.4    Ambros, P.F.5    Kovar, H.6
  • 31
    • 0037194586 scopus 로고    scopus 로고
    • Activation of anaplastic lymphoma kinase is responsible for hyperphosphorylation of ShcC in neuroblastoma cell lines
    • I. Miyake, Y. Hakomori, A. Shinohara, T. Gamou, M. Saito, A. Iwamatsu, and R. Sakai Activation of anaplastic lymphoma kinase is responsible for hyperphosphorylation of ShcC in neuroblastoma cell lines Oncogene 21 2002 5823
    • (2002) Oncogene , vol.21 , pp. 5823
    • Miyake, I.1    Hakomori, Y.2    Shinohara, A.3    Gamou, T.4    Saito, M.5    Iwamatsu, A.6    Sakai, R.7
  • 33
    • 12344259648 scopus 로고    scopus 로고
    • Analysis of array CGH data: From signal ratio to gain and loss of DNA regions
    • P. Hupe, N. Stransky, J.P. Thiery, F. Radvanyi, and E. Barillot Analysis of array CGH data: from signal ratio to gain and loss of DNA regions Bioinformatics 20 2004 3413 3422
    • (2004) Bioinformatics , vol.20 , pp. 3413-3422
    • Hupe, P.1    Stransky, N.2    Thiery, J.P.3    Radvanyi, F.4    Barillot, E.5
  • 34
    • 9444223586 scopus 로고    scopus 로고
    • Breakpoint identification and smoothing of array comparative genomic hybridization data
    • K. Jong, E. Marchiori, G. Meijer, A. Van Der Vaart, and B. Ylstra Breakpoint identification and smoothing of array comparative genomic hybridization data Bioinformatics 20 2004 3636 3637
    • (2004) Bioinformatics , vol.20 , pp. 3636-3637
    • Jong, K.1    Marchiori, E.2    Meijer, G.3    Van Der Vaart, A.4    Ylstra, B.5
  • 35
    • 0028815356 scopus 로고
    • Deletion mapping in neuroblastoma cell lines suggests two distinct tumor suppressor genes in the 1p35-36 region, only one of which is associated with N-myc amplification
    • N.C. Cheng, N. Van Roy, A. Chan, M. Beitsma, A. Westerveld, F. Speleman, and R. Versteeg Deletion mapping in neuroblastoma cell lines suggests two distinct tumor suppressor genes in the 1p35-36 region, only one of which is associated with N-myc amplification Oncogene 10 1995 291 297
    • (1995) Oncogene , vol.10 , pp. 291-297
    • Cheng, N.C.1    Van Roy, N.2    Chan, A.3    Beitsma, M.4    Westerveld, A.5    Speleman, F.6    Versteeg, R.7
  • 37
    • 0346992283 scopus 로고    scopus 로고
    • Detection of single-copy chromosome 17q gain in human neuroblastomas using real-time quantitative polymerase chain reaction
    • M. Morowitz, S. Shusterman, Y. Mosse, G. Hii, C.L. Winter, and D. Khazi Detection of single-copy chromosome 17q gain in human neuroblastomas using real-time quantitative polymerase chain reaction Mod. Pathol. 16 2003 1248 1256
    • (2003) Mod. Pathol. , vol.16 , pp. 1248-1256
    • Morowitz, M.1    Shusterman, S.2    Mosse, Y.3    Hii, G.4    Winter, C.L.5    Khazi, D.6
  • 38
    • 0038105499 scopus 로고    scopus 로고
    • Genetic and epigenetic alterations in neuroblastoma
    • G.P. Tonini, and M. Romani Genetic and epigenetic alterations in neuroblastoma Cancer Lett. 197 2003 69 73
    • (2003) Cancer Lett. , vol.197 , pp. 69-73
    • Tonini, G.P.1    Romani, M.2
  • 39
    • 0035171136 scopus 로고    scopus 로고
    • Multicentre analysis of patterns of DNA gains and losses in 204 neuroblastoma tumors: How many genetic subgroups are there?
    • J. Vandesompele, F. Speleman, N. Van Roy, G. Laureys, C. Brinskchmidt, and H. Christiansen Multicentre analysis of patterns of DNA gains and losses in 204 neuroblastoma tumors: how many genetic subgroups are there? Med. Pediatr. Oncol. 36 2001 5 10
    • (2001) Med. Pediatr. Oncol. , vol.36 , pp. 5-10
    • Vandesompele, J.1    Speleman, F.2    Van Roy, N.3    Laureys, G.4    Brinskchmidt, C.5    Christiansen, H.6
  • 40
    • 14844354380 scopus 로고    scopus 로고
    • Maximum likelihood estimation of oncogenetic tree models
    • A. von Heydebreck, B. Gunawan, and L. Fuzesi Maximum likelihood estimation of oncogenetic tree models Biostatistics 5 2004 545 556
    • (2004) Biostatistics , vol.5 , pp. 545-556
    • Von Heydebreck, A.1    Gunawan, B.2    Fuzesi, L.3
  • 42
    • 0019333492 scopus 로고
    • Occam's razor
    • T.F. Smith Occam's razor Nature 285 1980 620
    • (1980) Nature , vol.285 , pp. 620
    • Smith, T.F.1
  • 43
    • 0025312728 scopus 로고
    • A genetic model for colorectal tumorigenesis
    • E.R. Fearon, and B. Vogelstein A genetic model for colorectal tumorigenesis Cell 61 1990 759 767
    • (1990) Cell , vol.61 , pp. 759-767
    • Fearon, E.R.1    Vogelstein, B.2
  • 44
    • 0037190798 scopus 로고    scopus 로고
    • Genetic parameters of neuroblastomas
    • F. Westermann, and M. Schwab Genetic parameters of neuroblastomas Cancer Lett. 184 2002 127 147
    • (2002) Cancer Lett. , vol.184 , pp. 127-147
    • Westermann, F.1    Schwab, M.2
  • 45
    • 8044258202 scopus 로고
    • In situ neuroblastomas: A contribution to the natural history of neural crest tumors
    • J. Beckwith, and E. Perrin In situ neuroblastomas: a contribution to the natural history of neural crest tumors Am. J. Pathol. 43 1963 1089 1104
    • (1963) Am. J. Pathol. , vol.43 , pp. 1089-1104
    • Beckwith, J.1    Perrin, E.2
  • 47
    • 0141816855 scopus 로고    scopus 로고
    • Genome-wide array CGH analysis of murine neuroblastoma reveals distinct genomic aberrations which parallel those in human tumors
    • C.S. Hackett, J.G. Hodgson, M.E. Law, J. Fridlyand, K. Osoegawa, and P.J. De Jong Genome-wide array CGH analysis of murine neuroblastoma reveals distinct genomic aberrations which parallel those in human tumors Cancer Res. 63 2003 5266 5273
    • (2003) Cancer Res. , vol.63 , pp. 5266-5273
    • Hackett, C.S.1    Hodgson, J.G.2    Law, M.E.3    Fridlyand, J.4    Osoegawa, K.5    De Jong, P.J.6
  • 49
    • 0033034390 scopus 로고    scopus 로고
    • Molecular biology of neuroblastoma
    • J. Maris, and K.K. Matthay Molecular biology of neuroblastoma J. Clin. Oncol. 17 1999 2264 2279
    • (1999) J. Clin. Oncol. , vol.17 , pp. 2264-2279
    • Maris, J.1    Matthay, K.K.2
  • 50
    • 0002588093 scopus 로고    scopus 로고
    • Concept of tumorigenesis and regression
    • G.M. Brodeur T. Sawada Y. Tsuchida P.A. Voute Elsevier Science B.V. Amsterdam
    • I.M. Ambros, and G.M. Brodeur Concept of tumorigenesis and regression G.M. Brodeur T. Sawada Y. Tsuchida P.A. Voute Neuroblastoma 2000 Elsevier Science B.V. Amsterdam 21 32
    • (2000) Neuroblastoma , pp. 21-32
    • Ambros, I.M.1    Brodeur, G.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.