-
1
-
-
0037350957
-
SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model
-
Alexandersson, M., Cawley, S., and Pachter, L. 2003. SLAM: Cross-species gene finding and alignment with a generalized pair hidden Markov model. Genome Res. 13, 496-502.
-
(2003)
Genome Res.
, vol.13
, pp. 496-502
-
-
Alexandersson, M.1
Cawley, S.2
Pachter, L.3
-
2
-
-
0242418246
-
Phylogenetic shadowing of primate sequences to find functional regions of the human genome
-
Boffeli, D., McAuliffe, J., Lewis, K.D., Ovcharenko, I., Pachter, L., and Rubin, E.M. 2003. Phylogenetic shadowing of primate sequences to find functional regions of the human genome. Science 299, 1391-1394.
-
(2003)
Science
, vol.299
, pp. 1391-1394
-
-
Boffeli, D.1
McAuliffe, J.2
Lewis, K.D.3
Ovcharenko, I.4
Pachter, L.5
Rubin, E.M.6
-
3
-
-
0031586003
-
Prediction of complete gene structures in human genomic DNA
-
Burge, C., and Karlin, S. 1997. Prediction of complete gene structures in human genomic DNA. J. Mol., Biol. 268, 78-94.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 78-94
-
-
Burge, C.1
Karlin, S.2
-
4
-
-
0030585734
-
Evaluation of gene structure prediction programs
-
Burset, M., and Guigo, R. 1996. Evaluation of gene structure prediction programs. Genomics 34, 356-367.
-
(1996)
Genomics
, vol.34
, pp. 356-367
-
-
Burset, M.1
Guigo, R.2
-
5
-
-
2942610553
-
HMM sampling and applications to gene finding and alternative splicing
-
Cawley, S., and Pachter, L. 2003. HMM sampling and applications to gene finding and alternative splicing. Bioinformatics 19, 36-41.
-
(2003)
Bioinformatics
, vol.19
, pp. 36-41
-
-
Cawley, S.1
Pachter, L.2
-
6
-
-
1842684068
-
Genome sequence of the brown Norway rat yields insights into mammalian evolution
-
Consortium, R.G.S. 2004. Genome sequence of the brown Norway rat yields insights into mammalian evolution. Nature 428, 493-521.
-
(2004)
Nature
, vol.428
, pp. 493-521
-
-
Consortium, R.G.S.1
-
7
-
-
0003516147
-
-
Cambridge University Press, Cambridge, UK
-
Durbin, R., Eddy, S., Korgh, A., and Mitchison, G. 1998. Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids, Cambridge University Press, Cambridge, UK.
-
(1998)
Biological Sequence Analysis: Probabilistic Models of Proteins and Nucleic Acids
-
-
Durbin, R.1
Eddy, S.2
Korgh, A.3
Mitchison, G.4
-
8
-
-
0036110293
-
Transcriptional regulation of the stem cell leukemia gene (scl)-comparative analysis of five vertebrate scl loci
-
Göttgens, B., Barton, L.M., Chapman, M.A., Sinclair, A.M., Knudsen, B., Grafham, D., Gilbert, J.G.R., Rogers, J., Bentley, D.R., and Green, R. 2002. Transcriptional regulation of the stem cell leukemia gene (scl)-comparative analysis of five vertebrate scl loci. Genome Res. 12, 749-759.
-
(2002)
Genome Res.
, vol.12
, pp. 749-759
-
-
Göttgens, B.1
Barton, L.M.2
Chapman, M.A.3
Sinclair, A.M.4
Knudsen, B.5
Grafham, D.6
Gilbert, J.G.R.7
Rogers, J.8
Bentley, D.R.9
Green, R.10
-
9
-
-
0036226603
-
Blat - The blast like alignment tool
-
Kent, J. 2002. Blat-the blast like alignment tool. Genome Biol. 12, 656-664.
-
(2002)
Genome Biol.
, vol.12
, pp. 656-664
-
-
Kent, J.1
-
10
-
-
17444437765
-
Integrating genomic homology into gene structure prediction
-
Korf, I., Flicek, P., Duan, D., and Brent, M.R. 2001. Integrating genomic homology into gene structure prediction. Bioinformatics 17, S140-S148.
-
(2001)
Bioinformatics
, vol.17
-
-
Korf, I.1
Flicek, P.2
Duan, D.3
Brent, M.R.4
-
11
-
-
0030333286
-
A generalized hidden Markov model for the recognition of human genes in DNA
-
Kulp, D., Haussler, D., Reese, M.G., and Eeckman, RH. 1996. A generalized hidden Markov model for the recognition of human genes in DNA. Proc. Int. Conf. Intell. Syst. Mol. Biol. 4, 134-142.
-
(1996)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.4
, pp. 134-142
-
-
Kulp, D.1
Haussler, D.2
Reese, M.G.3
Eeckman, R.H.4
-
12
-
-
0027912333
-
Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment
-
Lawrence, C.E., Altschul, S.F., Boguski, M.S., Liu, J.S., Neuwald, A.F., and Wiitton, J.C. 1993. Detecting subtle sequence signals: A Gibbs sampling strategy for multiple alignment. Science 262, 208-214.
-
(1993)
Science
, vol.262
, pp. 208-214
-
-
Lawrence, C.E.1
Altschul, S.F.2
Boguski, M.S.3
Liu, J.S.4
Neuwald, A.F.5
Wiitton, J.C.6
-
13
-
-
84950424966
-
Bayesian models for multiple local sequence alignment and its Gibbs sampling strategies
-
Liu, J., Lawrence, C., and Neuwald, A. 1995. Bayesian models for multiple local sequence alignment and its Gibbs sampling strategies. J. Am. Statist. Assoc. 90, 1156-1170.
-
(1995)
J. Am. Statist. Assoc.
, vol.90
, pp. 1156-1170
-
-
Liu, J.1
Lawrence, C.2
Neuwald, A.3
-
14
-
-
79951870792
-
The collapsed Gibbs sampler with applications to a gene regulation problem
-
Liu, J.S. 1994. The collapsed Gibbs sampler with applications to a gene regulation problem. J. Am. Statist. Assoc. 89, 958-966.
-
(1994)
J. Am. Statist. Assoc.
, vol.89
, pp. 958-966
-
-
Liu, J.S.1
-
15
-
-
0037268583
-
Comparative gene prediction in human and mouse
-
Parra, G., Agarawal, P., Abril, J.F., Wiehe, T., Fickett, J.W., and Guig'o, R. 2003. Comparative gene prediction in human and mouse. Genome Res. 13, 108-117.
-
(2003)
Genome Res.
, vol.13
, pp. 108-117
-
-
Parra, G.1
Agarawal, P.2
Abril, J.F.3
Wiehe, T.4
Fickett, J.W.5
Guig'o, R.6
-
16
-
-
84950758368
-
The calculation of posterior distributions by data augmentation
-
Tanner, M.A., and Wong, W.H. 1984. The calculation of posterior distributions by data augmentation. J. Am. Stat. Assoc. 82, 528-550.
-
(1984)
J. Am. Stat. Assoc.
, vol.82
, pp. 528-550
-
-
Tanner, M.A.1
Wong, W.H.2
-
17
-
-
0041465867
-
Comparative analyses of multi-species sequences from targeted genomic regions
-
Thomas, J.W. et al. 2003. Comparative analyses of multi-species sequences from targeted genomic regions. Nature 424, 788-793.
-
(2003)
Nature
, vol.424
, pp. 788-793
-
-
Thomas, J.W.1
-
18
-
-
1542563409
-
Initial sequencing and comparative analysis of the mouse genome
-
Waterston, R.H. et al. 2002. Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
-
(2002)
Nature
, vol.420
, pp. 520-562
-
-
Waterston, R.H.1
|