Large sequence heterogeneity of the small subunit ribosomal RNA gene of Plasmodium ovale in Cambodia

American Journal of Tropical Medicine and Hygiene

Volumn 72, Issue 6, 2005, Pages 719-724

  Incardona, Sandra ^a   Chy, Sophy ^a   Chiv, Lim ^b   Nhem, Sina ^a   Sem, Rithy ^a   Hewitt, Sean ^b   Doung, Socheat ^b   Mercereau Puijalon, Odile ^c   Fandeur, Thierry ^d  

^a INSTITUT PASTEUR DU CAMBODGE   (Cambodia)

^b National Center for Parasitology Entomology and Malaria Control   (Cambodia)

^c CNRS   (France)

^d CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RIBOSOME RNA; SMALL SUBUNIT RIBOSOMAL RNA; PROTOZOAL RNA;

ADULT; ARTICLE; CAMBODIA; FEMALE; GENE CLUSTER; GENE IDENTIFICATION; GENE TARGETING; GENETIC HETEROGENEITY; HAPLOTYPE; HUMAN; MAJOR CLINICAL STUDY; MALARIA; MALE; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMODIUM OVALE; POLYMERASE CHAIN REACTION; RNA GENE; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; ANIMAL; GENETICS; SEQUENCE HOMOLOGY;

PLASMODIUM OVALE;

ANIMALS; BASE SEQUENCE; CAMBODIA; GENETIC HETEROGENEITY; PLASMODIUM OVALE; RNA, PROTOZOAN; RNA, RIBOSOMAL; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 23844503066     PISSN: 00029637     EISSN: None     Source Type: Journal    
DOI: 10.4269/ajtmh.2005.72.719     Document Type: Article

References (37)

1. 1999. Mekong Malaria: malaria, multi-drug resistance and economic development in the greater Mekong sub region of Southeast Asia. Southeast Asian J Trop Med Public Health 30 (Suppl 4).
2. Denis MB, Meek SR, 1992. Malaria in Cambodia. Southeast Asian J Trop Med Public Health 23 (Suppl 4): 23-28.
3. Annual National Conference of the National Center for Parasitology, Entomology and Malaria Control, 2003. Phnom Penh, Cambodia: National Center for Parasitology, Entomology and Malaria Control, Ministry of Health.
4. Delbove P, Capponi M, 1948. Groupes ethniques et répartition des hématozoaires en Indochine méridionale. Bull Soc Pathol Exot 41: 361-364.
5. Eyles E, Wharton RH, Cheong WH, Warren W, 1964. Studies on malaria and Anopheles balabacensis in Cambodia. Bull World Health Organ 30: 7-21.
6. Cadigan FC, Desowitz RS, 1969. Two cases of Plasmodium ovale malaria from central Thailand. Trans R Soc Trop Med Hyg 63: 681-682.
7. Gleason NN, Fisher GU, Blumhardt R, Roth AE, Gaffney GW, 1970. Plasmodium ovale malaria acquired in Vietnam. Bull World Health Organ 42: 399-403.
8. Somboon P, Sivasomboon C, 1983. A case of Plasmodium ovale malaria acquired in Burma. Trans R Soc Trop Med Hyg 77: 567-568.
9. Karnasuta C, Pongvongsa T, Jongsakul K, Na Nakorn A, Watt G, 1997. Plasmodium ovale in Lao PDR. Southeast Asian J Trop Med Public Health 28: 746-747.
10. Paxton LA, Slutsker L, Schultz LJ, Luby SP, Meriwether R, Matson P, Sulzer A, 1996. Imported malaria in Montagnard refugees settling in North Carolina: implications for prevention and control. Am J Trop Med Hyg 54: 54-57.
11. Snounou G, Viriyakosol S, Jarra W, Thaithong S, Brown KN, 1993. Identification of the four human malaria parasite species in field samples by the polymerase chain reaction and detection of a high prevalence of mixed infections. Mol Biochem Parasitol 58: 283-292.
12. Snounou G, Viriyakosol S, Phing Zhu X, Jarra W, Pinheiro L, do Rosario VE, Thaithong S, Brown N, 1993. High sensitivity of detection of human malaria parasites by the use of nested polymerase chain reaction. Mol Biochem Parasitol 61:315-320.
13. Kawamoto F, Liu Q, Ferreira MU, Tantular IS, 1999. How prevalent are P. ovale and P. malariae in east Asia? Parasitol Today 15: 422-426.
14. Zhou M, Liu Q, Wongsrichanalai C, Suwonkerd W, Panart K, Prajakwong S, Pensiri A, Kimura M, Matsuoka H, Ferreira MU, Isomura S, Kawamoto F, 1998. High prevalence of Plasmodium malariae and Plasmodium ovale in malaria patients along the Thai-Myanmar border, as revealed by acridine orange staining and PCR-based diagnoses. Trop Med Int Health 3: 304-312.
15. Kawamoto F, Miyake H, Kaneko O, Kimura M, Nguyen TD, Nguyen TD, Liu Q, Zhou M, Le DD, Kawai S, Isomura S, Wataya Y, 1996. Sequence variation in the 18S rRNA gene, a target for PCR-based malaria diagnosis, in Plasmodium ovale from southern Vietnam. J Clin Microbiol 34: 2287-2289.
16. Liu Q, Zhu S, Mizuno S, Kimura M, Liu P, Isomura S, Wang X, Kawamoto F, 1998. Sequence variation in the small-subunit rRNA gene of Plasmodium malariae and prevalence of isolates with the variant sequence in Sichuan, China. J Clin Microbiol 36: 3378-3381.
17. Toma H, Kobayashi J, Vannachone B, Arakawa T, Sato Y, Nambanya S, Manivong K, Inthakone S, 1999. Plasmodium ovale infections detected by PCR assay in Lao PDR. Southeast Asian J Trop Med Public Health 30: 620-622.
18. Win TT, Lin K, Mizuno S, Zhou M, Liu Q, Ferreira MU, Tantular IS, Kojima S, Ishii A, Kawamoto F, 2002. Wide distribution of Plasmodium ovale in Myanmar. Trop Med Int Health 7: 231-239.
19. Tahar R, Basco LK, 1997. Detection of Plasmodium ovale malaria parasites by species-specific 18S rRNA amplification. Mol Cell Probes 11: 389-395.
20. McCutchan TF, Rathore D, Li J, 2004. Compensatory evolution in the human malaria parasite Plasmodium ovale. Genetics 166: 637-640.
21. Win TT, Jalioh A, Tantular IS, Tsuboi T, Ferreira MU, Kimura M, Kawamoto F, 2004. Molecular analysis of Plasmodium ovale variants. Emerg Infect Dis 10: 1235-1240.
22. Sakihama N, Mitamura T, Kaneko A, Horii T, Tanabe K, 2001. Long PCR amplification of Plasmodium falciparum DNA extracted from filter paper blots. Exp Parasitol 97: 50-54.
23. Singh B, Bobogare A, Cox-Singh J, Snounou G, Abdullah MS, Rahman HA, 1999. A genus- and species-specific polymerase chain reaction malaria detection assay for epidemiologic studies. Am J Trop Med Hyg 60: 687-692.
24. Kimura M, Miyake H, Kim HS, Tanabe M, Arai M, Kawai S, Yamane A, Wataya Y, 1995. Species-specific PCR detection of malaria parasites by microtiter plate hybridization: clinical study with malaria patients. J Clin Microbiol 33: 2342-2346.
25. Thompson JD, Higgins DG, Gibson TJ, 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
26. Felsenstein J, 2002. PHYLIP, Phylogeny Interference Package, Program and Documentation. Version 3.6a3. Seattle, WA: University of Washington.
27. Li J, Wirtz RA, McConkey GA, Sattabongkot J, Waters AP, Rogers MJ, McCutchan TF, 1995. Plasmodium: genus-conserved primers for species identification and quantitation. Exp Parasitol 81: 182-190.
28. Tachibana M, Tsuboi T, Kaneko O, Khuntirat B, Torii M, 2002. Two types of Plasmodium ovale defined by SSU rRNA have disctinct sequences for ookinete surface proteins. Mol Biochem Parasitol 122: 223-226.
29. Mercereau-Puijalon O, Barale JC, Bischoff E, 2002. Three multigene families in Plasmodium parasites: facts and questions. Int J Parasitol 32: 1323-1344.
30. McCutchan TF, de la Cruz VF, Lal AA, Gunderson JH, Elwood HJ, Sogin ML, 1988. Primary sequences of two small subunit ribosomal RNA genes from Plasmodium falciparum. Mol Biochem Parasitol 28: 63-68.
31. Li J, Gutell RR, Damberger SH, Wirtz RA, Kissinger JC, Rogers MJ, Sattabongkot J, McCutchan TF, 1997. Regulation and trafficking of three distinct 18S ribosomal RNAs during development of the malaria parasite. J Mol Biol 269: 203-213.
32. Qari SH, Shi YP, Pieniazek NJ, Collins WE, Lal AA, 1996. Phylogenetic relationship among the malaria parasites based on small subunit rRNA gene sequences: monophyletic nature of the human malaria parasite, Plasmodium falciparum. Mol Phylogenet Evol 6: 157-165.
33. Tanabe K, Sakihama N, Färnert A, Rooth I, Björkman A, Walliker D, Ranford-Cartwright L, 2002. In vitro recombination during PCR of Plasmodium falciparum DNA: a potential pit-fall in molecular population genetic analysis. Mol Biochem Parasitol 122: 211-216.
34. Bruce MC, Donnelly CA, Alpers MP, Galinski MR, Barnwell JW, Walliker D, Day KP, 2000. Cross-species interactions between malaria parasites in humans. Science 287: 845-848.
35. Maitland K, Williams TN, Newbold CI, 1997. Plasmodium vivax and P. falciparum: biological interactions and the possibility of cross-species immunity. Parasitol Today 13: 227-231.
36. Black J, Hommel M, Snounou G, Pinder M, 1994. Mixed infections with Plasmodium falciparum and P. malariae and fever in malaria (letter). Lancet 343: 1095.
37. Looareesuwan S, White NJ, Chittamas S, Bunnag D, Harinasuta T, 1987. High rate of Plasmodium vivax relapse following treatment of falciparum malaria in Thailand. Lancet 2: 1052-1055.