Phylogeography of masked (Sorex cinereus) and smoky shrews (Sorex fumeus) in the southern Appalachians

Journal of Mammalogy

Volumn 85, Issue 5, 2004, Pages 875-885

  Sipe, Tavis W ^a   Browne, Robert A ^a  

^a WAKE FOREST UNIVERSITY   (United States)

Author keywords

Amplified fragment length polymorphism; Control region; Cytochrome b; D loop; Mitochondrial DNA; Population structure; Shrews

Indexed keywords

GENETIC STRUCTURE; HABITAT FRAGMENTATION; MITOCHONDRIAL DNA; PHYLOGEOGRAPHY; POPULATION GENETICS;

APPALACHIANS; NORTH AMERICA; WESTERN HEMISPHERE; WORLD;

ABIES; PICEA; SOREX; SOREX CINEREUS; SOREX FUMEUS; SORICIDAE; VERTEBRATA;

EID: 23844490512     PISSN: 00222372     EISSN: None     Source Type: Journal    
DOI: 10.1644/214     Document Type: Article

References (49)

1. ANIMAL CARE AND USE COMMITTEE. 1998. Guidelines for the capture, handling, and care of mammals as approved by the American Society of Mammalogists. Journal of Mammalogy 79:1416-1431.
2. ARBOGAST, B. 1999. Mitochondrial DNA phylogeography of the New World flying squirrels (Glaucomys): implications for Pleistocene biogeography. Journal of Mammalogy 80:142-155.
3. BRAUN, D. D. 1989. Glacial and periglacial erosion of the Appalachians. Geomorphology 2:233-256.
4. BROWNE, R. A., P. D. WEIGL, E. EAGLESON, AND J. KELLY. 1999. Mountaintops as islands: I. Genetic variation among southern Appalachian populations of the endangered northern flying squirrel, Glaucomys sabrinus (Mammalia: Sciuridae). Pp. 205-214 in Proceedings of the Appalachian biogeography symposium (R. P. Eckerlin, ed.). Special Publication 7, Virginia Museum of Natural History, Martinsville, Virginia.
5. BUERKLE, C. A. 1999, The historical pattern of gene flow among migratory and nonmigratory populations of prairie warblers (Aves: Parulinae). Evolution 53:1915-1924.
6. CRESPI, E. J., L. J. RISSLER, AND R. A. BROWNE. 2003. Testing Pleistocene refugia theory: phylogeographical analysis of Desmognathus wrighti, a high-elevation salamander in the southern Appalachians. Molecular Ecology 12:969-984.
7. DELCOURT, H. R., AND P. A. DELCOURT. 1985. Quaternary palynology and vegetational history of the southeastern United States. Pp. 1-37 in Pollen records of late-quaternary North American sediments (V. Bryant, Jr., and R. Holloway, eds.). American Association of Stratigraphic Palynologists Foundation, Austin, Texas.
8. DELCOURT, P. A., H. R. DELCOURT, D. F. MORSE, AND P. A. MORSE. 1993. History, evolution, and organization of vegetation and human culture. Pp. 47-79 in Biodiversity of the southeastern United States lowland terrestrial communities (W. H. Martin, S. G. Boyce, and A. C. Echtemacht, eds.). John Wiley & Sons, Inc., New York.
9. DICE, L. R. 1945. Measures of the amount of ecologic association between species. Ecology 26:297-302.
10. DULL, C. W., J. E. WARD, H. D. BROWN, G. W. RYAN, W. H. CLERKE, AND R. J. UHLER. 1988. Evaluation of spruce and fir mortality in the southern Appalachian Mountains. Protection report R8-PR 13, United States Department of Agriculture, Forest Service, Atlanta, Georgia.
11. EXCOFFIER, L., AND S. SCHNEIDER. 1999. Why hunter-gatherer populations do not show signs of Pleistocene demographic expansions. Proceedings of the National Academy of Sciences 96:10597-10602.
12. EXCOFFIER, L., P. E. SMOUSE, AND J. M. QUATTRO. 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131:479-491.
13. FERREE, P. M. 1998. Gene flow between geographically isolated populations of the redback vole in the southern Appalachians: a coalescence-based study. M.S. thesis, Wake Forest University, Winston-Salem, North Carolina.
14. FISHER, R. A. 1930. The genetical theory of natural selection. Clarendon, Oxford, United Kingdom.
15. FU, Y.-X. 1997. Statistical tests of neutrality of mutations against population growth, hitchhiking, and background selection. Genetics 147:915-925.
16. HALL, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows. Nucleic Acids Symposium Series 41:95-98.
17. HARPENDING, H. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology 66:591-600.
18. HUTCHISON, D. W., AND A. R. TEMPLETON. 1999. Correlation of pairwise genetic and geographic distance measures: inferring the relative influences of gene flow and drift on the distribution of genetic variability. Evolution 53:1898-1914.
19. IRWIN, D. M., T. D. KOCHER, AND A. C. WILSON. 1991. Evolution of the cytochrome b gene of mammals. Journal of Molecular Evolution 32:128-144.
20. LAERM, J., W. M. FORD, T. S. MCCAY, M. A. MENZEL, L. T. LEPARDO, AND J. L. BOONE. 1999. Soricid communities in the southern Appalachians. Pp. 177-193 in Proceedings of the Appalachian biogeography symposium (R. P. Eckerlin, ed.). Special Publication 7, Virginia Museum of Natural History, Martinsville, Virginia.
21. MACARTHUR, R. H., AND E. O. WILSON. 1967. The theory of island biogeography. Princeton University Press, Princeton, New Jersey.
22. MANTEL, N. 1967. The detection of disease clustering and a generalized regression approach. Cancer Research 27:209-220.
23. NALEPA, C. A., P. LUYKX, K.-D. KLASS, AND L. L. DEITZ. 2002. Distribution of karyotypes of the Cryptocercus punctulatus species complex (Dictyoptera: Cryptocercidae) in the southern Appalachians: relation to habitat and history. Annals of the Entomological Society of America 95:276-287.
24. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York.
25. NEI, M., AND W.-H. LI. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences 76:5269-5273.
26. POSADA, D., AND K. A. CRANDALL. 1998. ModelTest: testing the model of DNA substitution. Bioinformatics 14:817-818.
27. REESE, C. L., J. M. WATERS, J. F. PAGELS, AND B. L. BROWN. 2001. Genetic structuring of relict populations of Gapper's red-backed vole (Clethrionomys gapperi). Journal of Mammalogy 82:289-301.
28. RHEINHARDT, R. D. 1984. Comparative study of composition and distribution patterns of subalpine forests in the Balsam Mountains of southwest Virginia and the Great Smoky Mountains. Bulletin of the Torrey Botanical Club 111:489-493.
29. RHEINHARDT, R. D., AND S. WARE. 1984. The vegetation of the Balsam Mountains of southwest Virginia: a phytosociological study. Bulletin of the Torrey Botanical Club 111:287-300.
30. ROGERS, A. R., AND H. C. HARPENDING. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution 9:552-569.
31. ROZAS, J., AND R. ROZAS. 1999. DNAsp Version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15:174-175.
32. SCHNEIDER, S., AND L. EXCOFFIER. 1999. Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates vary among sites: application to human mitochondrial DNA. Genetics 152:1079-1089.
33. SCHNEIDER, S., D. ROESSLI, AND L. EXCOFFIER. 2000. Arlequin version 2.000: A software for population genetics data analysis. Genetics and Biometry Laboratory, University of Geneva, Geneva, Switzerland.
34. SLATKIN, M. 1993. Isolation by distance in equilibrium and non-equilibrium populations. Evolution 47:264-279.
35. SLATKIN, M., AND R. R. HUDSON. 1991. Pairwise comparisons of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129:555-562.
36. SOUTHERN, S. O., P. J. SOUTHERN, AND A. E. DIZON. 1988. Molecular characterization of a cloned dolphin mitochondrial genome. Journal of Molecular Evolution 28:32-42.
37. STEELE, M. A., AND R. A. POWELL. 1999. Biogeography of small mammals in the southern Appalachians: patterns of local and regional abundance and distribution. Pp. 155-165 in Proceedings of the Appalachian biogeography symposium (R. P. Eckerlin, ed.). Special Publication 7, Virginia Museum of Natural History, Martinsville, Virginia.
38. STEWART, D. T., AND A. J. BAKER. 1994. Patterns of sequence variation in the mitochondrial D-loop region of shrews. Molecular Biology and Evolution 11:9-21.
39. STEWART, D. T., AND A. J. BAKER. 1997. A phylogeny of some taxa of masked shrews (Sorex cinereus) based on mitochondrial DNA D-loop sequences. Journal of Mammalogy 78:361-376.
40. SWOFFORD, D. 2002. PAUP* 4.0b10. Phylogenetic analysis using parsimony and other methods. Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
41. TAJIMA, F. 1993. Measurement of DNA polymorphism. Pp. 37-59 in Mechanisms of molecular evolution (N. Takahata and A. G. Clark, eds.). Sinauer Associates, Inc., Publishers, Sunderland, Massachusetts.
42. TAJIMA, F., AND M. NEI. 1984. Estimation of evolutionary distance between nucleotide sequences. Molecular Biology and Evolution 1:269-285.
43. THOMPSON, J. D., T. J. GIBSON, F. PLEWNIAK, F. JEANMOUGIN, AND D. G. HIGGINS. 1997. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 24:4876-4882.
44. USHER, M. B. 1995. Small populations: fragmentation, population dynamics, and population genetics. Pp. 11-21 in The role of genetics in conserving small populations (T. E. Tew, T. J. Crawford, J. W. Spencer, D. P. Stevens, M. B. Usher, and J. Warren, eds.). Joint Nature Conservation Committee, Petersborough, United Kingdom.
45. WARE, S. 1999. Paleoclimatic causes of altitudinal and geographical distribution of high elevation woody species in Virginia. Pp. 45-57 in Proceedings of the Appalachian biogeography symposium (R. P. Eckerlin, ed.). Special Publication 7, Virginia Museum of Natural History, Martinsville, Virginia.
46. WHITE, P. S., AND C. V. COGBILL. 1992. Spruce-fir forests of eastern North America. Pp. 2-39 in Ecology and decline of red spruce in the Eastern United States (C. Eager and M. B. Adams, eds.). Springer-Verlag, New York.
47. WILKINSON, G. S., AND A. M. CHAPMAN. 1991. Length and sequence variation in evening bat D-loop mtDNA. Genetics 128:607-617.
48. WRIGHT, S. 1921. Systems of mating. Genetics 6:111-178.
49. WRIGHT, S. 1931. Evolution in Mendelian populations. Genetics 16:97-159.