Identification of genes involved in cytochrome c biogenesis in Shewanella oneidensis, using a modified mariner transposon

Applied and Environmental Microbiology

Volumn 71, Issue 8, 2005, Pages 4935-4937

  Bouhenni, R ^a   Gehrke, A ^a   Saffarini, D ^a  

^a UNIVERSITY OF WISCONSIN MILWAUKEE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

GENETIC ENGINEERING; MUTAGENESIS; REDUCTION;

ANAEROBIC RESPIRATION; BIOGENESIS; CYTOCHROME C; MARINER TRANSPOSON; MUTANTS;

GENES;

CYTOCHROME C; DNA; NUCLEOTIDE;

MICROBIOLOGY;

ARTICLE; BIOGENESIS; ENZYME ACTIVITY; GENE; GENE DISRUPTION; GENOME; MUTANT; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; SHEWANELLA ONEIDENSIS; TRANSPOSON;

BACTERIAL PROTEINS; CYTOCHROMES C; DEOXYRIBONUCLEASE HINDIII; DNA TRANSPOSABLE ELEMENTS; MEMBRANE PROTEINS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; MUTATION; SEQUENCE ANALYSIS, DNA; SHEWANELLA;

BACTERIA (MICROORGANISMS); SHEWANELLA ONEIDENSIS;

EID: 23744508420     PISSN: 00992240     EISSN: None     Source Type: Journal    
DOI: 10.1128/AEM.71.8.4935-4937.2005     Document Type: Article

References (35)

1. Beliaev, A., and D. Saffarini. 1998. Shewanella putrefaciens mtrB encodes an outer membrane protein required for Fe(III) and Mn(IV) reduction. J. Bacteriol. 180:6292-6297.
2. Beliaev, A., D. Saffarini, J. McLaughlin, and D. Hunnicut. 2001. MtrC, an outer membrane decaheme c cytochrome required for metal reduction in Shewanella putrefaciens MR-1. Mol. Microbiol. 39:722-730.
3. Beliaev, A., D. Thompson, M. Fields, L. Wu, D. Lies, K. Nealson, and J. Zhou. 2002. Microarray transcription profiling of a Shewanella oneidensis etrA mutant. J. Bacteriol. 184:4612-4616.
4. Blatny, J. M., T. Brautaset, H. C, Winther-Larsen, K. Haugan, and S. Valla. 1997. Construction and use of a versatile set of broad-host-range cloning and expression vectors based on the RK2 replicon. Appl. Environ. Microbiol. 63:370-379.
5. DiChristina, T., C. Moore, and C. Haller. 2002. Dissimilatory Fe(III) and Mn(IV) reduction by Shewanella putrefaciens requires ferE, a homolog of the pulE (gspE) type II protein secretion gene. J. Bacteriol. 184:142-151.
6. Heidelberg, J., I. Paulsen, K. Nealson, E. Gaidos, W. Nelson, T. Read, et al. 2002. Genome sequence of the dissimilatory metal ion-reducing bacterium Shewanella oneidensis. Nat. Biotechnol. 20:1118-1123.
7. Lampe, D., B. Akerkey, E. Rubin, J. Mekalanos, and H. Robertson. 1999. Hyperactive transposase mutants of the Himar1 manner transposon. Proc. Natl. Acad. Sci. USA 96:11428-11433.
8. Meyer, T., A. Tsapin, I. Vandenberghe, L. de Smet, D. Frishman, K. Nealson, M. Cusanovich, and J. van Beeumen. 2004. Identification of 42 possible cytochrome c genes in the Shewanella oneidensis genome and characterization of six soluble cytochromes. OMICS 8:57-77.
9. Moser, D., and K. Nealson. 1996. Growth of the facultative anaerobe Shewanella putrefaciens by elemental sulfur reduction. Appl. Environ. Microbiol. 62:2100-2105.
10. Myers, C., and J. Myers. 1992. Localization of cytochromes to the outer membrane of anaerobically grown Shewanella putrefaciens MR-1. J. Bacteriol. 174:3429-3438.
11. Myers, C., and J. Myers. 1997. Outer membrane cytochromes of Shewanella putrefaciens MR-1: spectral analysis, and purification of the 83-kDa c-type cytochrome. Biochim. Biophys. Acta 1326:307-318.
12. Myers, C., and K. Nealson. 1988. Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor. Science 240:1319-1321.
13. Myers, C. R., and J. M. Myers. 1997. Cloning and sequence of cymA, a gene encoding tetraheme cytochrome c required for reduction of iron(III), fumarate, and nitrate by Shewanella putrefaciens MR-1. J. Bacteriol. 179:1143-1152.
14. Myers, J., and C. Myers. 2000. Chromium (VI) reductase activity is associated with the cytoplasmic membrane of anaerobically grown Shewanella putrefaciens MR-1. J. Appl. Microbiol. 88:98-106.
15. Nealson, K., and D. Saffarini. 1994. Iron and manganese in anaerobic respiration: environmental significance, physiology, and regulation. Annu. Rev. Microbiol. 48:311-343.
16. Newman, D., and R. Kolter. 2000. A role for excreted quinones in extracellular electron transfer. Nature 405:94-97.
17. Page, M., D. Pearce, H. Norris, and S. Ferguson. 1997. The Paracoccus denitrificans ccmA, B and C genes: cloning and sequencing, and analysis of the potential of their products to form a haem or apo-c-type cytochrome transporter. Microbiology 143:563-576.
18. 3-type cytochrome biogenesis; evidence for a reductase role in vivo. Mol. Microbiol. 24:977-990.
19. Ramseier, T., H. Winteler, and H. Hennecke. 1991. Discovery and sequence analysis of bacterial genes involved in the biogenesis of c-type cytochromes. J. Biol. Chem. 266:7793-7803.
20. Reid, E., D. Eaves, and J. Cole. 1998. The CcmE protein from Escherichia coli is a haem-binding protein. FEMS Microbiol. Lett. 166:369-375.
21. Ren, Q., U. Ahuja, and L. Thony-Meyer. 2002. A bacterial cytochrome c heme lyase. CcmF forms a complex with the heme chaperone CcmE and CcmH but not with apocytochrome c. J. Biol. Chem. 277:7657-7663.
22. Ren, Q., and L. Thony-Meyer. 2001. Physical interaction of CcmC with heme and the heme chaperone CcmE during cytochrome c maturation. J. Biol. Chem. 276:32591-32596.
23. Rubin, E., B. Akerley, V. Novik, D. Lampe, R. Husson, and J. Mekalanos. 1999. In vivo transposition of mariner-based elements in enteric bacteria and mycobacteria. Proc. Natl. Acad. Sci. USA 96:1645-1650.
24. Saffarini, D., S. Blumerman, and K. Mansoorabadi. 2002. Role of menaquinones in Fe(III) reduction by membrane fractions of Shewanella putrefaciens. J. Bacteriol. 184:846-848.
25. Saffarini, D. A., R. Schultz, and A. Beliaev. 2003. Involvement of cyclic AMP (cAMP) and cAMP receptor protein in anaerobic respiration of Shewanella oneidensis. J. Bacteriol. 185:3668-3671.
26. Saltikov, C., A. Cifuentes, K. Venkateswaran, and D. Newman. 2003. The ars detoxification system is advantageous but not required for As(V) respiration by the genetically tractable Shewanella species strain ANA-3. Appl. Environ. Microbiol. 69:2800-2809.
27. Saltikov, C., and D. Newman. 2003. Genetic identification of a respiratory arsenate reductase. Proc. Natl. Acad. Sci. USA 100:10983-10988.
28. Schulz, H., R. Fabianek, E. Pellicioli, H. Hennecke, and L. Thony-Meyer. 1999. Heme transfer to the heme chaperone CcmE during cytochrome c maturation requires the CcmC protein, which may function independently of the ABC-transporter CcmAB. Proc. Natl. Acad. Sci. USA 96:6462-6467.
29. Schulz, H., E. Pellicioli, and L. Thony-Meyer. 2000. New insights into the role of CcmC, CcmD, and CcmE in the haem delivery pathway during cytochrome c maturation by a complete mutational analysis of the conserved tryptophan-rich motif of CcmC. Mol. Microbiol. 37:1379-1388.
30. Thomas, P. E., D. Ryan, and W. Levin. 1976. An improved staining procedure for the detection of the peroxidase activity of cytochrome P-450 on sodium dodecyl sulfate polyacrylamide gels. Anal. Biochem. 75:168-176.
31. Thony-Meyer, L. 1997. Biogenesis of respiratory cytochromes in bacteria. Microbiol. Mol. Biol. Rev. 61:337-376.
32. Thony-Meyer, L., F. Fischer, P. Kunzler, D. Ritz, and H. Hennecke. 1995. Escherichia coli genes required for cytochrome c maturation. J. Bacteriol. 177:4321-4326.
33. Venkateswaran, K., D. P. Moser, M. E. Dollhopf, D. P. Lies, D. A. Saffarini, B. J. MacGregor, D. B. Ringelberg, D. C. White, M. Nishijima, H. Sano, J. Burghardt, E. Stackebrandt, and K. H. Nealson. 1999. Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int. J. Syst. Bacteriol. 49:705-724.
34. Wade, R., and T. DiChristina. 2000. Isolation of U(VI) reduction-deficient mutants of Shewanella putrefaciens. FEMS Microbiol. Lett. 184:143-146.
35. Youderian, P., N. Burke, D. White, and P. Hatzell. 2003. Identification of genes required for adventurous gliding motility in Myxococcus xanthus with the transposable element mariner. Mol. Microbiol. 49:555-570.