메뉴 건너뛰기




Volumn 335, Issue 2, 2005, Pages 314-321

Secondary structure probing of the human RNase MRP RNA reveals the potential for MRP RNA subsets

Author keywords

Ribonucleoprotein; RNA; RNase MRP; RNase P; Secondary structure; Structure probing

Indexed keywords

MITOCHONDRIAL RNA; RIBONUCLEASE;

EID: 23744498094     PISSN: 0006291X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbrc.2005.07.074     Document Type: Article
Times cited : (8)

References (46)
  • 1
    • 0023283102 scopus 로고
    • A novel endoribonuclease cleaves at a priming site of mouse mitochondrial DNA replication
    • D.D. Chang, and D.A. Clayton A novel endoribonuclease cleaves at a priming site of mouse mitochondrial DNA replication EMBO J. 6 1987 409 417
    • (1987) EMBO J. , vol.6 , pp. 409-417
    • Chang, D.D.1    Clayton, D.A.2
  • 2
    • 0029619655 scopus 로고
    • Dynamic localization of RNase MRP RNA in the nucleolus observed by fluorescent RNA cytochemistry in living cells
    • M.R. Jacobson, L.G. Cao, Y.L. Wang, and T. Pederson Dynamic localization of RNase MRP RNA in the nucleolus observed by fluorescent RNA cytochemistry in living cells J. Cell Biol. 131 1995 1649 1658
    • (1995) J. Cell Biol. , vol.131 , pp. 1649-1658
    • Jacobson, M.R.1    Cao, L.G.2    Wang, Y.L.3    Pederson, T.4
  • 4
    • 0023900161 scopus 로고
    • Immunolocalization of7-2-ribonucleoprotein in the granular component of the nucleolus
    • G. Reimer, I. Raska, U. Scheer, and E.M. Tan Immunolocalization of7-2-ribonucleoprotein in the granular component of the nucleolus Exp. Cell Res. 176 1988 117 128
    • (1988) Exp. Cell Res. , vol.176 , pp. 117-128
    • Reimer, G.1    Raska, I.2    Scheer, U.3    Tan, E.M.4
  • 5
    • 0028054796 scopus 로고
    • The RNA of RNase MRP is required for normal processing of ribosomal RNA
    • S. Chu, R.H. Archer, J.M. Zengel, and L. Lindahl The RNA of RNase MRP is required for normal processing of ribosomal RNA Proc. Natl. Acad. Sci. USA 91 1994 659 663
    • (1994) Proc. Natl. Acad. Sci. USA , vol.91 , pp. 659-663
    • Chu, S.1    Archer, R.H.2    Zengel, J.M.3    Lindahl, L.4
  • 6
    • 0029981894 scopus 로고    scopus 로고
    • Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro
    • Z. Lygerou, C. Allmang, D. Tollervey, and B. Seraphin Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro Science 272 1996 268 270
    • (1996) Science , vol.272 , pp. 268-270
    • Lygerou, Z.1    Allmang, C.2    Tollervey, D.3    Seraphin, B.4
  • 7
    • 0027367147 scopus 로고
    • Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae
    • M.E. Schmitt, and D.A. Clayton Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae Mol. Cell Biol. 13 1993 7935 7941
    • (1993) Mol. Cell Biol. , vol.13 , pp. 7935-7941
    • Schmitt, M.E.1    Clayton, D.A.2
  • 8
    • 1642430571 scopus 로고    scopus 로고
    • RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: Novel method of mRNA degradation
    • T. Gill, T. Cai, J. Aulds, S. Wierzbicki, and M.E. Schmitt RNase MRP cleaves the CLB2 mRNA to promote cell cycle progression: novel method of mRNA degradation Mol. Cell Biol. 24 2004 945 953
    • (2004) Mol. Cell Biol. , vol.24 , pp. 945-953
    • Gill, T.1    Cai, T.2    Aulds, J.3    Wierzbicki, S.4    Schmitt, M.E.5
  • 10
    • 0036210354 scopus 로고    scopus 로고
    • Human ribonuclease P: Subunits, function, and intranuclear localization
    • N. Jarrous Human ribonuclease P: subunits, function, and intranuclear localization RNA 8 2002 1 7
    • (2002) RNA , vol.8 , pp. 1-7
    • Jarrous, N.1
  • 11
    • 0031711821 scopus 로고    scopus 로고
    • Ribonuclease P: Unity and diversity in a tRNA processing ribozyme
    • D.N. Frank, and N.R. Pace Ribonuclease P: unity and diversity in a tRNA processing ribozyme Annu. Rev. Biochem. 67 1998 153 180
    • (1998) Annu. Rev. Biochem. , vol.67 , pp. 153-180
    • Frank, D.N.1    Pace, N.R.2
  • 12
    • 0036231352 scopus 로고    scopus 로고
    • Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins
    • T.A. Hall, and J.W. Brown Archaeal RNase P has multiple protein subunits homologous to eukaryotic nuclear RNase P proteins RNA 8 2002 296 306
    • (2002) RNA , vol.8 , pp. 296-306
    • Hall, T.A.1    Brown, J.W.2
  • 13
    • 0035997350 scopus 로고    scopus 로고
    • Eukaryotic ribonuclease P: A plurality of ribonucleoprotein enzymes
    • S. Xiao, F. Scott, C.A. Fierke, and D.R. Engelke Eukaryotic ribonuclease P: a plurality of ribonucleoprotein enzymes Annu. Rev. Biochem. 71 2002 165 189
    • (2002) Annu. Rev. Biochem. , vol.71 , pp. 165-189
    • Xiao, S.1    Scott, F.2    Fierke, C.A.3    Engelke, D.R.4
  • 14
    • 0021013526 scopus 로고
    • The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
    • C. Guerrier-Takada, K. Gardiner, T. Marsh, N. Pace, and S. Altman The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme Cell 35 1983 849 857
    • (1983) Cell , vol.35 , pp. 849-857
    • Guerrier-Takada, C.1    Gardiner, K.2    Marsh, T.3    Pace, N.4    Altman, S.5
  • 16
    • 0035127579 scopus 로고    scopus 로고
    • Eukaryotic ribonuclease P: Increased complexity to cope with the nuclear pre-tRNA pathway
    • S. Xiao, F. Houser-Scott, and D.R. Engelke Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway J. Cell Physiol. 187 2001 11 20
    • (2001) J. Cell Physiol. , vol.187 , pp. 11-20
    • Xiao, S.1    Houser-Scott, F.2    Engelke, D.R.3
  • 17
    • 2642635832 scopus 로고    scopus 로고
    • Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP
    • J.R. Chamberlain, Y. Lee, W.S. Lane, and D.R. Engelke Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP Genes Dev. 12 1998 1678 1690
    • (1998) Genes Dev. , vol.12 , pp. 1678-1690
    • Chamberlain, J.R.1    Lee, Y.2    Lane, W.S.3    Engelke, D.R.4
  • 18
    • 15744375062 scopus 로고    scopus 로고
    • Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component
    • K. Salinas, S. Wierzbicki, L. Zhou, and M.E. Schmitt Characterization and purification of Saccharomyces cerevisiae RNase MRP reveals a new unique protein component J. Biol. Chem. 280 2005 11352 11360
    • (2005) J. Biol. Chem. , vol.280 , pp. 11352-11360
    • Salinas, K.1    Wierzbicki, S.2    Zhou, L.3    Schmitt, M.E.4
  • 19
    • 0027942999 scopus 로고
    • Characterization of a unique protein component of yeast RNase MRP: An RNA-binding protein with a zinc-cluster domain
    • M.E. Schmitt, and D.A. Clayton Characterization of a unique protein component of yeast RNase MRP: an RNA-binding protein with a zinc-cluster domain Genes Dev. 8 1994 2617 2628
    • (1994) Genes Dev. , vol.8 , pp. 2617-2628
    • Schmitt, M.E.1    Clayton, D.A.2
  • 20
    • 0029954106 scopus 로고    scopus 로고
    • HPop1: An autoantigenic protein subunit shared by the human RNase P and RNase MRP ribonucleoproteins
    • Z. Lygerou, H. Pluk, W.J. van Venrooij, and B. Seraphin hPop1: an autoantigenic protein subunit shared by the human RNase P and RNase MRP ribonucleoproteins EMBO J. 15 1996 5936 5948
    • (1996) EMBO J. , vol.15 , pp. 5936-5948
    • Lygerou, Z.1    Pluk, H.2    Van Venrooij, W.J.3    Seraphin, B.4
  • 22
    • 0033564065 scopus 로고    scopus 로고
    • HPop4: A new protein subunit of the human RNase MRP and RNase P ribonucleoprotein complexes
    • H. van Eenennaam, G.J. Pruijn, and W.J. van Venrooij hPop4: a new protein subunit of the human RNase MRP and RNase P ribonucleoprotein complexes Nucleic Acids Res. 27 1999 2465 2472
    • (1999) Nucleic Acids Res. , vol.27 , pp. 2465-2472
    • Van Eenennaam, H.1    Pruijn, G.J.2    Van Venrooij, W.J.3
  • 24
    • 0034538974 scopus 로고    scopus 로고
    • Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA
    • D.N. Frank, C. Adami, M.A. Ehringer, C. Pitulle, and N.R. Pace Phylogenetic-comparative analysis of the eukaryal ribonuclease P RNA RNA 6 2000 1895 1904
    • (2000) RNA , vol.6 , pp. 1895-1904
    • Frank, D.N.1    Adami, C.2    Ehringer, M.A.3    Pitulle, C.4    Pace, N.R.5
  • 26
    • 0027391688 scopus 로고
    • Secondary structure of RNase MRP RNA as predicted by phylogenetic comparison
    • M.E. Schmitt, J.L. Bennett, D.J. Dairaghi, and D.A. Clayton Secondary structure of RNase MRP RNA as predicted by phylogenetic comparison FASEB J. 7 1993 208 213
    • (1993) FASEB J. , vol.7 , pp. 208-213
    • Schmitt, M.E.1    Bennett, J.L.2    Dairaghi, D.J.3    Clayton, D.A.4
  • 27
    • 0025308501 scopus 로고
    • Secondary structure of the RNA component of a nuclear/mitochondrial ribonucleoprotein
    • J.N. Topper, and D.A. Clayton Secondary structure of the RNA component of a nuclear/mitochondrial ribonucleoprotein J. Biol. Chem. 265 1990 13254 13262
    • (1990) J. Biol. Chem. , vol.265 , pp. 13254-13262
    • Topper, J.N.1    Clayton, D.A.2
  • 28
    • 0033814944 scopus 로고    scopus 로고
    • Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP
    • L.J. Collins, V. Moulton, and D. Penny Use of RNA secondary structure for studying the evolution of RNase P and RNase MRP J. Mol. Evol. 51 2000 194 204
    • (2000) J. Mol. Evol. , vol.51 , pp. 194-204
    • Collins, L.J.1    Moulton, V.2    Penny, D.3
  • 29
    • 0028826945 scopus 로고
    • Schizosaccharomyces pombe RNase MRP RNA is homologous to metazoan RNase MRP RNAs and may provide clues to interrelationships between RNase MRP and RNase P
    • J.L. Paluh, and D.A. Clayton Schizosaccharomyces pombe RNase MRP RNA is homologous to metazoan RNase MRP RNAs and may provide clues to interrelationships between RNase MRP and RNase P Yeast 11 1995 1249 1264
    • (1995) Yeast , vol.11 , pp. 1249-1264
    • Paluh, J.L.1    Clayton, D.A.2
  • 30
    • 0036273255 scopus 로고    scopus 로고
    • Phylogenetic analysis of the structure of RNase MRP RNA in yeasts
    • X. Li, D.N. Frank, N. Pace, J.M. Zengel, and L. Lindahl Phylogenetic analysis of the structure of RNase MRP RNA in yeasts RNA 8 2002 740 751
    • (2002) RNA , vol.8 , pp. 740-751
    • Li, X.1    Frank, D.N.2    Pace, N.3    Zengel, J.M.4    Lindahl, L.5
  • 31
    • 3342969661 scopus 로고    scopus 로고
    • A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction
    • S.C. Walker, and J.M. Avis A conserved element in the yeast RNase MRP RNA subunit can participate in a long-range base-pairing interaction J. Mol. Biol. 341 2004 375 388
    • (2004) J. Mol. Biol. , vol.341 , pp. 375-388
    • Walker, S.C.1    Avis, J.M.2
  • 32
    • 0042161808 scopus 로고    scopus 로고
    • General plasmids for producing RNA in vitro transcripts with homogeneous ends
    • S.C. Walker, J.M. Avis, and G.L. Conn General plasmids for producing RNA in vitro transcripts with homogeneous ends Nucleic Acids Res. 31 2003 e82
    • (2003) Nucleic Acids Res. , vol.31 , pp. 82
    • Walker, S.C.1    Avis, J.M.2    Conn, G.L.3
  • 33
    • 0035802131 scopus 로고    scopus 로고
    • In vitro selection of hammerhead ribozyme sequence variants
    • F. Eckstein, A.R. Kore, and K.L. Nakamaye In vitro selection of hammerhead ribozyme sequence variants Chembiochem 2 2001 629 635
    • (2001) Chembiochem , vol.2 , pp. 629-635
    • Eckstein, F.1    Kore, A.R.2    Nakamaye, K.L.3
  • 34
    • 0027222970 scopus 로고
    • Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme
    • G. Thill, M. Vasseur, and N.K. Tanner Structural and sequence elements required for the self-cleaving activity of the hepatitis delta virus ribozyme Biochemistry 32 1993 4254 4262
    • (1993) Biochemistry , vol.32 , pp. 4254-4262
    • Thill, G.1    Vasseur, M.2    Tanner, N.K.3
  • 35
    • 0024564403 scopus 로고
    • Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites
    • P. Gornicki, F. Baudin, P. Romby, M. Wiewiorowski, W. Kryzosiak, J.P. Ebel, C. Ehresmann, and B. Ehresmann Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites J. Biomol. Struct. Dyn. 6 1989 971 984
    • (1989) J. Biomol. Struct. Dyn. , vol.6 , pp. 971-984
    • Gornicki, P.1    Baudin, F.2    Romby, P.3    Wiewiorowski, M.4    Kryzosiak, W.5    Ebel, J.P.6    Ehresmann, C.7    Ehresmann, B.8
  • 36
    • 0022973884 scopus 로고
    • On the recognition of helical RNA by cobra venom V1 nuclease
    • H.B. Lowman, and D.E. Draper On the recognition of helical RNA by cobra venom V1 nuclease J. Biol. Chem. 261 1986 5396 5403
    • (1986) J. Biol. Chem. , vol.261 , pp. 5396-5403
    • Lowman, H.B.1    Draper, D.E.2
  • 37
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • I.L. Hofacker Vienna RNA secondary structure server Nucleic Acids Res. 31 2003 3429 3431
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 38
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • M. Zuker Mfold web server for nucleic acid folding and hybridization prediction Nucleic Acids Res. 31 2003 3406 3415
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 39
    • 0029955048 scopus 로고    scopus 로고
    • RNAdraw: An integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows
    • O. Matzura, and A. Wennborg RNAdraw: an integrated program for RNA secondary structure calculation and analysis under 32-bit Microsoft Windows Comput. Appl. Biosci. 12 1996 247 249
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 247-249
    • Matzura, O.1    Wennborg, A.2
  • 40
    • 2342599644 scopus 로고    scopus 로고
    • Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex
    • T.J.M. Welting, W.J. van Venrooij, and G.J.M. Pruijn Mutual interactions between subunits of the human RNase MRP ribonucleoprotein complex Nucleic Acids Res. 32 2004 2138 2146
    • (2004) Nucleic Acids Res. , vol.32 , pp. 2138-2146
    • Welting, T.J.M.1    Van Venrooij, W.J.2    Pruijn, G.J.M.3
  • 41
    • 3142714285 scopus 로고    scopus 로고
    • Identification of a functional core in the RNA component of RNase MRP of budding yeasts
    • X. Li, S. Zaman, Y. Langdon, J.M. Zengel, and L. Lindahl Identification of a functional core in the RNA component of RNase MRP of budding yeasts Nucleic Acids Res. 32 2004 3703 3711
    • (2004) Nucleic Acids Res. , vol.32 , pp. 3703-3711
    • Li, X.1    Zaman, S.2    Langdon, Y.3    Zengel, J.M.4    Lindahl, L.5
  • 42
    • 0032899186 scopus 로고    scopus 로고
    • RNA-protein interactions in the human RNase MRP ribonucleoprotein complex
    • H. Pluk, H. van Eenennaam, S.A. Rutjes, G.J. Pruijn, and W.J. van Venrooij RNA-protein interactions in the human RNase MRP ribonucleoprotein complex RNA 5 1999 512 524
    • (1999) RNA , vol.5 , pp. 512-524
    • Pluk, H.1    Van Eenennaam, H.2    Rutjes, S.A.3    Pruijn, G.J.4    Van Venrooij, W.J.5
  • 43
    • 0027295076 scopus 로고
    • Comparative structural analysis of nuclear RNase P RNAs from yeast
    • A.J. Tranguch, and D.R. Engelke Comparative structural analysis of nuclear RNase P RNAs from yeast J. Biol. Chem. 268 1993 14045 14055
    • (1993) J. Biol. Chem. , vol.268 , pp. 14045-14055
    • Tranguch, A.J.1    Engelke, D.R.2
  • 44
    • 0028131972 scopus 로고
    • Interaction of the 3-end of tRNA with ribonuclease P RNA
    • B.K. Oh, and N.R. Pace Interaction of the 3-end of tRNA with ribonuclease P RNA Nucleic Acids Res. 22 1994 4087 4094
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4087-4094
    • Oh, B.K.1    Pace, N.R.2
  • 45
    • 0027973546 scopus 로고
    • Base pairing between Escherichia coli RNase P RNA and its substrate
    • L.A. Kirsebom, and S.G. Svard Base pairing between Escherichia coli RNase P RNA and its substrate EMBO J. 13 1994 4870 4876
    • (1994) EMBO J. , vol.13 , pp. 4870-4876
    • Kirsebom, L.A.1    Svard, S.G.2
  • 46
    • 6044275739 scopus 로고    scopus 로고
    • Basis for structural diversity in homologous RNAs
    • A.S. Krasilnikov, Y. Xiao, T. Pan, and A. Mondragon Basis for structural diversity in homologous RNAs Science 306 2004 104 107
    • (2004) Science , vol.306 , pp. 104-107
    • Krasilnikov, A.S.1    Xiao, Y.2    Pan, T.3    Mondragon, A.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.