Experimentally exploring the conformational space sampled by domain reorientation in calmodulin

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 18, 2004, Pages 6841-6846

  Bertini, Ivano ^a   Del Blanco, Cristina ^a   Gelis, Ioannis ^b   Katsaros, Nikolaus ^b   Luchinat, Claudio ^a   Parigi, Giacomo ^a   Peana, Massimiliano ^c   Provenzani, Alessandro ^a   Zoroddu, Maria Antonietta ^c  

^a UNIVERSITY OF FLORENCE   (Italy)

^b INSTITUTE OF NANOSCIENCE AND NANOTECHNOLOGY   (Greece)

^c UNIVERSITY OF SASSARI   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

CALMODULIN; TERBIUM; THULIUM;

AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONFORMATIONAL TRANSITION; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; NUCLEAR OVERHAUSER EFFECT; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN DOMAIN;

ANIMALS; ANISOTROPY; CALMODULIN; HUMANS; PROTEIN CONFORMATION; PROTEIN STRUCTURE, TERTIARY;

EID: 2342640750     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0308641101     Document Type: Article

References (58)

1. Carafoli, E. (2002) Proc. Natl. Acad. Sci. USA 99, 1115-1122.
2. Kawasaki, K. & Kretsinger, R. H. (1994) Protein 1, 343-517.
3. Biekofsky, R. R., Martin, S. R., Browne, J. P., Bayley, P. M. & Feeney, J. (1998) Biochemistry 37, 7617-7629.
4. Chin, D. H. & Means, A. R. (2000) Trends Cell Biol. 10, 322-328.
5. Cox, J. A., Comte, M., Malnoë, A., Burger, D. & Stein, E. A. (1984) in Metal Ions in Biological Systems: Calcium and its Role in Biology, ed. Sigel, H. (Dekker, NY), pp. 215-273.
6. Crivici, A. & Ikura, M. (1995) Annu. Rev. Biophys. Biomol. Struct. 24, 85-116.
7. Finn, B. E., Evenäs, J., Drakenberg, T., Waltho, J., Thulin, E. & Forsén, S. (1995) Nat. Struct. Biol. 2, 777-783.
8. Peersen, O. B., Madsen, T. S. & Falke, J. J. (1997) Protein Sci. 6, 794-807.
9. Babu, Y. S., Bugg, C. E. & Cook, W. J. (1988) J. Mol. Biol. 204, 191-204.
10. Schumacher, R. T., Rivard, A. F., Bachinger, H. P. & Adelman, J. P. (2001) Nature 410, 1120-1124.
11. Ikura, M., Clore, G. M., Gronenborn, A. M., Zhu, G., Clee, C. & Bax, A. (1992) Science 256, 632-638.
12. Ikura, M., Barbato, G., Klee, C. B. & Bax, A. (1992) Cell Calcium 13, 391-400.
13. Meador, W. E., Means, A. R. & Quiocho, F. A. (1992) Science 257, 1251-1255.
14. Osawa, M., Tokumitsu, H., Swindells, M., Kurihara, H., Orita, M., Shibanuma, T., Furuya, T. & Ikura, M. (1999) Nat. Struct. Biol. 6, 819-826.
15. Elshorst, B., Hennig, M., Forsterling, H., Diener, A., Maurer, M., Schulte, P., Schwalbe, H., Griesinger, C., Krebs, J. F., Schmid, H. & Carafoli, E. (1999) Biochemistry 38, 12320-12332.
16. Barbato, G., Ikura, M., Kay, L. E., Pastor, R. W. & Bax, A. (1992) Biochemistry 31, 5269-5278.
17. Baber, J. L., Szabo, A. & Tjandra, N. (2001) J. Am. Chem. Soc. 123, 3953-3959.
18. Seaton, B. A., Head J. F. & Richardson, F. M. (1985) Biochemistry 24, 6740-6743.
19. Heidorn, D. B. & Trewhella, J. (1988) Biochemistry 27, 909-915.
20. Matsushima, N., Izumi, Y., Matsuo, T., Yoshino, H., Ueki, T. & Miyake, Y. (1989) J. Biochem. (Tokyo) 105, 883-887.
21. Wriggers, W., Mehler, E., Pitici, F., Weinstein, H. & Schulten, K. (1998) Biophys. J. 74, 1622-1639.
22. Barton, N. P., Verma, C. S. & Caves, L. S. D. (2002) J. Phys. Chem. B 106, 11036-11040.
23. Chang, S.-G., Szabo, A. & Tjandra, N. (2003) J. Am. Chem. Soc. 125, 11379-11384.
24. Wilson, M. A. & Brunger, A. T. (2000) J. Mol. Biol. 301, 1237-1256.
25. Fallon, J. L. & Quiocho, F. A. (2003) Structure 11, 1303-1307.
26. Barbieri, R., Bertini, I., Cavallaro, G., Lee, Y.-M., Luchinat, C. & Rosato, A. (2002) J. Am. Chem. Soc. 124, 5581-5587.
27. Bertini, I., Longinetti, M., Luchinat, C., Parigi, G. & Sgheri, L. (2002) J. Biomol. NMR 22, 123-136.
28. Biekofsky, R. R., Muskett, F. W., Schmidt, J. M., Martin, S. R., Browne, J. P., Bayley, P. M. & Feeney, J. (1999) FEBS Lett. 460, 519-526.
29. Bertini, I., Gelis, I., Katsaros, N., Luchinat, C. & Provenzani, A. (2003) Biochemistry 42, 8011-8021.
30. Chou, J. J., Li, S., Klee, C. B. & Bax, A. (2001) Nat. Struct. Biol. 8, 990-997.
31. Goto, N. K., Skrynnikov, N. R., Dahlquist, F. W. & Kay, L. E. (2001) J. Mol. Biol. 308, 745-764.
32. Skrynnikov, N. R., Goto, N. K., Yang, D., Choy, W.-Y., Tolman, J. R., Mueller, G. A. & Kay, L. E. (2000) J. Mol. Biol. 295, 1265-1273.
33. Piotto, M., Saudek, V. & Sklenar, V. (1992) J. Biomol. NMR 2, 661-666.
34. Goddard, T. D. & Kneller, D. G. (2000) SPARKY 3 (Univ. of California, San Francisco).
35. Schleucher, J., Schwendinger, M., Sattler, M., Schmidt, P., Schedletzky, O., Glaser, S. J., Sorensen, O. W. & Griesinger, C. (1994) J. Biomol. NMR 4, 301-306.
36. Tjandra, N., Grzesiek, S. & Bax, A. (1996) J. Am. Chem. Soc. 118, 6264-6272.
37. Kay, L. E., Ikura, M., Tschudin, R. & Bax, A. (1990) J. Magn. Reson. 89, 496-514.
38. Muhandiram, D. R. & Kay, L. E. (1994) J. Magn. Reson. B 103, 203-216.
39. Kay, L. E., Xu, G. Y., Singer, A. U., Muhandiram, D. R. & Forman-Kay, J. D. (1993) J. Magn. Reson. B 101, 333-337.
40. Vuister, G. W. & Bax, A. (1993) J. Am. Chem. Soc. 115, 7772-7777.
41. Wider, G., Neri, D., Otting, G. & Wüthrich, K. (1989) J. Magn. Reson. 85, 426-431.
42. Gagné, S. M., Tsuda, S., Li, M. X., Chandra, M., Smillie, L. B. & Sykes, B. D. (1994) Protein Sci. 3, 1961-1974.
43. Hwang, T.-J. & Shaka, A. J. (1995) J. Magn. Reson. A 112, 275-279.
44. Güntert, P., Braun, W. & Wüthrich, K. (1991) J. Mol. Biol. 217, 517-530.
45. Güntert, P., Mumenthaler, C. & Wüthrich, K. (1997) J. Mol. Biol. 273, 283-298.
46. Banci, L., Bertini, I., Cremonini, M. A., Gori Savellini, G., Luchinat, C., Wüthrich, K. & Güntert, P. (1998). J. Biomol. NMR 12, 553-557.
47. Bertini, I., Luchinat, C. & Parigi, G. (2002) Progr. NMR Spectrosc. 40, 249-273.
48. Banci, L., Bertini, I., Huber, J. G., Luchinat, C. & Rosato, A. (1998) J. Am Chem. Soc. 120, 12903-12909.
49. Bertini, I., Luchinat, C. & Parigi, G. (2001) Solution NMR of Paramagnetic Molecules (Elsevier, Amsterdam).
50. Allegrozzi, M., Bertini, I., Janik, M. B. L., Lee, Y.-M., Liu, G. & Luchinat, C. (2000) J. Am. Chem. Soc. 122, 4154-4161.
51. Baig, I., Bertini, I., Del Bianco, C., Gupta, Y. K., Lee, Y.-M., Luchinat, C. & Quattrone, A, (2004) Biochemistry 43, in press.
52. Bertini, I., Luchinat, C. & Parigi, G. (2002) Concepts Magn. Reson. 14, 259-286.
53. Bertini, I., Janik, M. B. L., Lee, Y.-M., Luchinat, C. & Rosato, A. (2001) J. Am. Chem. Soc. 123, 4181-4188.
54. Meiler, J., Prompers, J. J., Peti, W., Griesinger, C. & Brüschweiler, R. (2001) J. Am. Chem. Soc. 123, 6098-6107.
55. Peti, W., Meiler, J., Brüschweiler, R. & Griesinger, C. (2002) J. Am. Chem. Soc. 124, 5822-5833.
56. Tjandra, N. & Bax, A. (1997) Science 278, 1111-1114.
57. Clore, G. M., Gronenborn, A. M. & Bax, A. (1998) J. Magn. Reson. 133, 216-221.
58. Dosset, P., Hus, J. C., Marion, D. & Blackledge, M. (2001) J. Biomol. NMR 20, 223-231.