-
1
-
-
0023518540
-
A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons
-
Barton G.J., Sternberg M.J. A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons. J. Mol. Biol. 198:1987;327-337.
-
(1987)
J. Mol. Biol.
, vol.198
, pp. 327-337
-
-
Barton, G.J.1
Sternberg, M.J.2
-
2
-
-
0000303438
-
The multiple sequence alignment problems in biology
-
Carrillo H., Lipman D.J. The multiple sequence alignment problems in biology. SIAM J. Appl. Math. 48:1988;1073-1082.
-
(1988)
SIAM J. Appl. Math.
, vol.48
, pp. 1073-1082
-
-
Carrillo, H.1
Lipman, D.J.2
-
3
-
-
0030582739
-
Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments
-
Gotoh O. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments. J. Mol. Biol. 264:1996;823-838.
-
(1996)
J. Mol. Biol.
, vol.264
, pp. 823-838
-
-
Gotoh, O.1
-
4
-
-
0033563413
-
Two strategies for sequence comparison: Profile-preprocessed and secondary structure-induced multiple alignment
-
Heringa J. Two strategies for sequence comparison: profile-preprocessed and secondary structure-induced multiple alignment. Comput. Chem. 23:1999;341-364.
-
(1999)
Comput. Chem.
, vol.23
, pp. 341-364
-
-
Heringa, J.1
-
5
-
-
0035984476
-
Local weighting schemes for protein multiple sequence alignment
-
Heringa J. Local weighting schemes for protein multiple sequence alignment. Comput Chem. 26:2002;459-477.
-
(2002)
Comput Chem.
, vol.26
, pp. 459-477
-
-
Heringa, J.1
-
7
-
-
0027266816
-
Multiple sequence alignment by parallel simulated annealing
-
Ishikawa M., Toya T., Hoshida M., Nitta K., Ogiwara A., Kanehisa M. Multiple sequence alignment by parallel simulated annealing. Comput. Appl. Biosci. 9:1993;267-273.
-
(1993)
Comput. Appl. Biosci.
, vol.9
, pp. 267-273
-
-
Ishikawa, M.1
Toya, T.2
Hoshida, M.3
Nitta, K.4
Ogiwara, A.5
Kanehisa, M.6
-
8
-
-
85010105210
-
The maximum weight trace problem in multiple sequence alignment
-
Kececioglu J.D. The maximum weight trace problem in multiple sequence alignment. Lect. Notes Comput. Sci. 684:1993;106-119.
-
(1993)
Lect. Notes Comput. Sci.
, vol.684
, pp. 106-119
-
-
Kececioglu, J.D.1
-
9
-
-
0027935740
-
Multiple sequence alignment using simulated annealing
-
Kim J., Pramanik S., Chung M.J. Multiple sequence alignment using simulated annealing. Comput. Appl. Biosci. 10:1994;419-426.
-
(1994)
Comput. Appl. Biosci.
, vol.10
, pp. 419-426
-
-
Kim, J.1
Pramanik, S.2
Chung, M.J.3
-
12
-
-
0014757386
-
A general method applicable to the search for similarities in the amino acid sequence of two proteins
-
Needleman S.B., Wunsch C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:1970;443-453.
-
(1970)
J. Mol. Biol.
, vol.48
, pp. 443-453
-
-
Needleman, S.B.1
Wunsch, C.D.2
-
13
-
-
0036208872
-
Recent progress in multiple sequence alignment: A survey
-
Notredame C. Recent progress in multiple sequence alignment: a survey. Pharmacogenomics. 3:2002;131-144.
-
(2002)
Pharmacogenomics
, vol.3
, pp. 131-144
-
-
Notredame, C.1
-
14
-
-
0029872694
-
SAGA: Sequence alignment by genetic algorithm
-
Notredame C., Higgins D.G. SAGA: sequence alignment by genetic algorithm. Nucl. Acids Res. 24:1996;1515-1524.
-
(1996)
Nucl. Acids Res.
, vol.24
, pp. 1515-1524
-
-
Notredame, C.1
Higgins, D.G.2
-
15
-
-
0031829993
-
COFFEE: An objective function for multiple sequence alignments
-
Notredame C., Holm L., Higgins D.G. COFFEE: an objective function for multiple sequence alignments. Bioinformatics. 14:1998;407-422.
-
(1998)
Bioinformatics
, vol.14
, pp. 407-422
-
-
Notredame, C.1
Holm, L.2
Higgins, D.G.3
-
16
-
-
0034623005
-
T-COFFEE: A novel method for fast and accurate multiple sequence alignment
-
Notredame C., Higgins D.G., Heringa J. T-COFFEE: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol. 302:2000;205-217.
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 205-217
-
-
Notredame, C.1
Higgins, D.G.2
Heringa, J.3
-
17
-
-
0019887799
-
Identification of common molecular subsequences
-
Smith T.F., Waterman M.S. Identification of common molecular subsequences. J. Mol. Biol. 147:1981;195-197.
-
(1981)
J. Mol. Biol.
, vol.147
, pp. 195-197
-
-
Smith, T.F.1
Waterman, M.S.2
-
18
-
-
0024245156
-
A flexible method to align large numbers of biological sequences
-
Taylor W.R. A flexible method to align large numbers of biological sequences. J. Mol. E. 28:1988;161-169.
-
(1988)
J. Mol. E
, vol.28
, pp. 161-169
-
-
Taylor, W.R.1
-
19
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson J.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucl. Acids Res. 22:1994;4673-4680.
-
(1994)
Nucl. Acids Res.
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
20
-
-
0032988850
-
BAliBASE: A benchmark alignment database for the evaluation of multiple alignment programs
-
Thompson J.D., Plewniak F., Poch O. BAliBASE: a benchmark alignment database for the evaluation of multiple alignment programs. Bioinformatics. 15:1999a;87-88.
-
(1999)
Bioinformatics
, vol.15
, pp. 87-88
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
21
-
-
0033168097
-
A comprehensive comparison of multiple sequence alignment programs
-
Thompson J.D., Plewniak F., Poch O. A comprehensive comparison of multiple sequence alignment programs. Nucl. Acids Res. 27:1999b;2682-2690.
-
(1999)
Nucl. Acids Res.
, vol.27
, pp. 2682-2690
-
-
Thompson, J.D.1
Plewniak, F.2
Poch, O.3
-
22
-
-
0035824873
-
Towards a reliable objective function for multiple sequence alignments
-
Thompson J.D., Plewniak F., Ripp R., Thierry J.C., Poch O. Towards a reliable objective function for multiple sequence alignments. J. Mol. Biol. 314:2001;937-951.
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 937-951
-
-
Thompson, J.D.1
Plewniak, F.2
Ripp, R.3
Thierry, J.C.4
Poch, O.5
-
23
-
-
0038391401
-
RASCAL: Rapid scanning and correction of multiple sequence alignments towards a reliable objective function for multiple sequence alignments
-
Thompson J.D., Thierry J.C., Poch O., Plewniak F., Ripp R. RASCAL: rapid scanning and correction of multiple sequence alignments towards a reliable objective function for multiple sequence alignments. Bioinformatics. 19:2003;1155-1161.
-
(2003)
Bioinformatics
, vol.19
, pp. 1155-1161
-
-
Thompson, J.D.1
Thierry, J.C.2
Poch, O.3
Plewniak, F.4
Ripp, R.5
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