메뉴 건너뛰기




Volumn 32, Issue 3, 2004, Pages 1224-1231

Length-dependent structure formation in Friedreich ataxia (GAA)n·(TTC)n repeats at neutral pH

Author keywords

[No Author keywords available]

Indexed keywords

ADENINE; CYTOSINE; DNA; DOUBLE STRANDED DNA; FRATAXIN; GUANINE; PURINE; PYRIMIDINE; TYROSINE; IRON BINDING PROTEIN; TRIPLEX DNA;

EID: 2342627878     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/gkh274     Document Type: Article
Times cited : (80)

References (54)
  • 2
    • 0025129284 scopus 로고
    • The Friedreich ataxia gene is assigned to chromosome 9q13-q21 by mapping of tightly linked markers and shows linkage disequilibrium with D9S15
    • Hanauer,A., Chery,M., Fujita,R., Driesel,A., Gigenkrantz,S. and Mandel,J.L. (1990) The Friedreich ataxia gene is assigned to chromosome 9q13-q21 by mapping of tightly linked markers and shows linkage disequilibrium with D9S15. Am. J. Hum. Genet., 46, 133-137.
    • (1990) Am. J. Hum. Genet. , vol.46 , pp. 133-137
    • Hanauer, A.1    Chery, M.2    Fujita, R.3    Driesel, A.4    Gigenkrantz, S.5    Mandel, J.L.6
  • 7
    • 0036713922 scopus 로고    scopus 로고
    • The GAA triplet-repeat sequence in Friedreich ataxia shows a high level of somatic instability in vivo, with a significant predilection for large contractions
    • Sharma,R., Bhatti,S., Gomez,M., Clark,R.M., Murray,C., Ashizawa,T. and Bidichandani,S.I. (2002) The GAA triplet-repeat sequence in Friedreich ataxia shows a high level of somatic instability in vivo, with a significant predilection for large contractions. Hum. Mol. Genet., 11, 2175-2187.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 2175-2187
    • Sharma, R.1    Bhatti, S.2    Gomez, M.3    Clark, R.M.4    Murray, C.5    Ashizawa, T.6    Bidichandani, S.I.7
  • 10
    • 0030895266 scopus 로고    scopus 로고
    • Atypical Friedreich ataxia caused by compound heterozygosity for a novel missense mutation and the GAA triplet-repeat expansion
    • Bidichandani,S.I., Ashizawa,T. and Patel,P.I. (1997) Atypical Friedreich ataxia caused by compound heterozygosity for a novel missense mutation and the GAA triplet-repeat expansion. Am. J. Hum. Genet., 60, 1251-1256
    • (1997) Am. J. Hum. Genet. , vol.60 , pp. 1251-1256
    • Bidichandani, S.I.1    Ashizawa, T.2    Patel, P.I.3
  • 12
    • 0031941447 scopus 로고    scopus 로고
    • The GAA triplet-repeat expansion in Friedreich ataxia interferes with transcription and may be associated with an unusual DNA structure
    • Bidichandani,S.I., Ashizawa,T. and Patel,P.I. (1998) The GAA triplet-repeat expansion in Friedreich ataxia interferes with transcription and may be associated with an unusual DNA structure. Am. J. Hum. Genet., 62, 111-121.
    • (1998) Am. J. Hum. Genet. , vol.62 , pp. 111-121
    • Bidichandani, S.I.1    Ashizawa, T.2    Patel, P.I.3
  • 13
    • 0032486276 scopus 로고    scopus 로고
    • Inhibitory effects of expanded GAA·TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivo
    • Ohshima,K., Montermini,L., Wells,R.D. and Pandolfo,M. (1998) Inhibitory effects of expanded GAA·TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivo. J. Biol. Chem., 273, 14588-14595.
    • (1998) J. Biol. Chem. , vol.273 , pp. 14588-14595
    • Ohshima, K.1    Montermini, L.2    Wells, R.D.3    Pandolfo, M.4
  • 14
    • 0034660695 scopus 로고    scopus 로고
    • The GAA·TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner
    • Grabczyk,E. and Usdin,K. (2000) The GAA·TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner. Nucleic Acids Res., 28, 2815-2822.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2815-2822
    • Grabczyk, E.1    Usdin, K.2
  • 15
    • 0026773938 scopus 로고
    • Localized torsional tension in the DNA of human cells
    • Ljungman,M. and Hanawalt,P.C. (1992) Localized torsional tension in the DNA of human cells. Proc. Natl Acad. Sci. USA, 89, 6055-6059.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 6055-6059
    • Ljungman, M.1    Hanawalt, P.C.2
  • 16
    • 0027409470 scopus 로고
    • Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus
    • Jupe,E.R., Sinden,R.R. and Cartwright,I.L. (1993) Stably maintained microdomain of localized unrestrained supercoiling at a Drosophila heat shock gene locus. EMBO J., 12, 1067-1075.
    • (1993) EMBO J. , vol.12 , pp. 1067-1075
    • Jupe, E.R.1    Sinden, R.R.2    Cartwright, I.L.3
  • 17
    • 0030901608 scopus 로고    scopus 로고
    • Measurement of unrestrained negative supercoiling and topological domain size in living human cells
    • Kramer,P.R. and Sinden,R.R. (1997) Measurement of unrestrained negative supercoiling and topological domain size in living human cells. Biochemistry, 36, 3151-3158.
    • (1997) Biochemistry , vol.36 , pp. 3151-3158
    • Kramer, P.R.1    Sinden, R.R.2
  • 18
    • 0023433855 scopus 로고
    • Supercoiling of the DNA template during transcription
    • Liu,L.F. and Wang,J.C. (1987) Supercoiling of the DNA template during transcription. Proc. Natl Acad. Sci. USA, 84, 7024-7027.
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 7024-7027
    • Liu, L.F.1    Wang, J.C.2
  • 19
    • 0032102835 scopus 로고    scopus 로고
    • Trinucleotide repeat DNA structures: Dynamic mutations from dynamic DNA
    • Pearson,C.E. and Sinden,R.R. (1998) Trinucleotide repeat DNA structures: dynamic mutations from dynamic DNA. Curr. Opin. Struct. Biol., 8, 321-330.
    • (1998) Curr. Opin. Struct. Biol. , vol.8 , pp. 321-330
    • Pearson, C.E.1    Sinden, R.R.2
  • 20
    • 0026542473 scopus 로고
    • Slippage synthesis of simple sequence DNA
    • Schlotterer,C. and Tautz,D. (1992) Slippage synthesis of simple sequence DNA. Nucleic Acids Res., 20, 211-215.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 211-215
    • Schlotterer, C.1    Tautz, D.2
  • 21
    • 0037462828 scopus 로고    scopus 로고
    • Hairpin formation in Friedreich's ataxia triplet repeat expansion
    • Heidenfelder,B.L., Makhov,A.M. and Topal,M.D. (2003) Hairpin formation in Friedreich's ataxia triplet repeat expansion. J. Biol. Chem., 278, 2425-2431.
    • (2003) J. Biol. Chem. , vol.278 , pp. 2425-2431
    • Heidenfelder, B.L.1    Makhov, A.M.2    Topal, M.D.3
  • 24
    • 0036127084 scopus 로고    scopus 로고
    • Formation and thermodynamic stability of intermolecular (R*R*Y) DNA triplex in GAA/TTC repeats associated with Friedreich's ataxia
    • Jain,A., Rajeswari,M.R. and Ahmed,F. (2002) Formation and thermodynamic stability of intermolecular (R*R*Y) DNA triplex in GAA/TTC repeats associated with Friedreich's ataxia. J. Biomol. Struct. Dyn., 19, 61-699.
    • (2002) J. Biomol. Struct. Dyn. , vol.19 , pp. 61-699
    • Jain, A.1    Rajeswari, M.R.2    Ahmed, F.3
  • 25
    • 0011204402 scopus 로고
    • Intramolecular DNA triplexes in supercoiled plasmids
    • Hanvey,J.C., Shimizu,M. and Wells,R.D. (1988) Intramolecular DNA triplexes in supercoiled plasmids. Proc. Natl Acad. Sci. USA, 85, 6292-6296.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 6292-6296
    • Hanvey, J.C.1    Shimizu, M.2    Wells, R.D.3
  • 26
    • 0025301201 scopus 로고
    • Multiple non-B-DNA conformations of polypurine·polypyrimidine sequences in plasmids
    • Shimizu,M., Hanvey,J.C. and Wells,R.D. (1990) Multiple non-B-DNA conformations of polypurine·polypyrimidine sequences in plasmids. Biochemistry, 29, 4704-4713.
    • (1990) Biochemistry , vol.29 , pp. 4704-4713
    • Shimizu, M.1    Hanvey, J.C.2    Wells, R.D.3
  • 27
    • 0029950726 scopus 로고    scopus 로고
    • Cloning, characterization and properties of seven triplet repeat DNA sequences
    • Ohshima,K., Kang,S., Larson,J.E. and Wells,R.D. (1996) Cloning, characterization and properties of seven triplet repeat DNA sequences. J. Biol. Chem., 271, 16773-16783.
    • (1996) J. Biol. Chem. , vol.271 , pp. 16773-16783
    • Ohshima, K.1    Kang, S.2    Larson, J.E.3    Wells, R.D.4
  • 28
    • 0033120042 scopus 로고    scopus 로고
    • Sticky DNA: Self-association properties of long GAA·TTC repeats in R·R·Y triplex structures from Friedreich's ataxia
    • Sakamoto,N., Chastain,P.D., Parniewski,P., Ohshima,K., Pandolfo,M., Griffith,J.D. and Wells,R.D. (1999) Sticky DNA: self-association properties of long GAA·TTC repeats in R· R·Y triplex structures from Friedreich's ataxia. Mol. Cell, 3, 465-475.
    • (1999) Mol. Cell , vol.3 , pp. 465-475
    • Sakamoto, N.1    Chastain, P.D.2    Parniewski, P.3    Ohshima, K.4    Pandolfo, M.5    Griffith, J.D.6    Wells, R.D.7
  • 29
    • 0037131228 scopus 로고    scopus 로고
    • Sticky DNA, a long GAA·GAA·TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene
    • Vetcher,A.A., Napierala,M., Iyer,R.R., Chastain,P.D., Griffith,J.D. and Wells,R.D. (2002) Sticky DNA, a long GAA· GAA·TTC triplex that is formed intramolecularly, in the sequence of intron 1 of the frataxin gene. J. Biol. Chem., 277, 39217-39227.
    • (2002) J. Biol. Chem. , vol.277 , pp. 39217-39227
    • Vetcher, A.A.1    Napierala, M.2    Iyer, R.R.3    Chastain, P.D.4    Griffith, J.D.5    Wells, R.D.6
  • 31
    • 0032530650 scopus 로고    scopus 로고
    • Stabilization of triple/single strand (H-DNA) structure by cationic peptides
    • Potaman,V.N. and Sinden,R.R. (1998) Stabilization of triple/single strand (H-DNA) structure by cationic peptides. Biochemistry, 37, 12952-12961.
    • (1998) Biochemistry , vol.37 , pp. 12952-12961
    • Potaman, V.N.1    Sinden, R.R.2
  • 32
    • 0029886720 scopus 로고    scopus 로고
    • The formation of a combined H-DNA/open TATA box structure in the promoter sequence of the human Na,K-ATPase α2 gene
    • Potaman,V.N., Ussery,D.W. and Sinden,R.R. (1996) The formation of a combined H-DNA/open TATA box structure in the promoter sequence of the human Na,K-ATPase α2 gene. J. Biol. Chem., 271, 13441-13447.
    • (1996) J. Biol. Chem. , vol.271 , pp. 13441-13447
    • Potaman, V.N.1    Ussery, D.W.2    Sinden, R.R.3
  • 36
    • 0035976711 scopus 로고    scopus 로고
    • The structure of intramolecular triplex DNA: Atomic force microscopy study
    • Tiner,W.J., Potaman,V.N., Sinden,R.R. and Lyubchenko,Y.L. (2001) The structure of intramolecular triplex DNA: atomic force microscopy study. J. Mol. Biol., 314, 353-357.
    • (2001) J. Mol. Biol. , vol.314 , pp. 353-357
    • Tiner, W.J.1    Potaman, V.N.2    Sinden, R.R.3    Lyubchenko, Y.L.4
  • 37
    • 0023951264 scopus 로고
    • Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA
    • Kohwi,Y. and Kohwi-Shigematsu,T. (1988) Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA. Proc. Natl Acad. Sci. USA, 85, 3781-3785.
    • (1988) Proc. Natl Acad. Sci. USA , vol.85 , pp. 3781-3785
    • Kohwi, Y.1    Kohwi-Shigematsu, T.2
  • 38
    • 0026466862 scopus 로고
    • Intramolecular DNA triplexes: Unusual sequence requirements and influence on DNA polymerization
    • Dayn,A., Samadashwily,G.M. and Mirkin,S.M. (1992) Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization. Proc. Natl Acad. Sci. USA, 89, 11406-11410.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 11406-11410
    • Dayn, A.1    Samadashwily, G.M.2    Mirkin, S.M.3
  • 41
    • 0023780437 scopus 로고
    • Single strands, triple strands and kinks in H-DNA
    • Htun,H. and Dahlberg,J.E. (1988) Single strands, triple strands and kinks in H-DNA. Science, 241, 1791-1796.
    • (1988) Science , vol.241 , pp. 1791-1796
    • Htun, H.1    Dahlberg, J.E.2
  • 43
    • 0025297864 scopus 로고
    • Effect of length, supercoiling and pH on intramolecular triplex formation. Multiple conformers at pur·pyr mirror repeats
    • Collier,D.A. and Wells,R.D. (1990) Effect of length, supercoiling and pH on intramolecular triplex formation. Multiple conformers at pur·pyr mirror repeats. J. Biol. Chem., 265, 10652-10658.
    • (1990) J. Biol. Chem. , vol.265 , pp. 10652-10658
    • Collier, D.A.1    Wells, R.D.2
  • 44
    • 0025834327 scopus 로고
    • Detection of triple-helix related structures adopted by poly(dG)-poly(dC) sequences in supercoiled plasmid DNA
    • Kohwi-Shigematsu,T. and Kohwi,Y. (1991) Detection of triple-helix related structures adopted by poly(dG)-poly(dC) sequences in supercoiled plasmid DNA. Nucleic Acids Res., 19, 4267-4271.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 4267-4271
    • Kohwi-Shigematsu, T.1    Kohwi, Y.2
  • 48
    • 0033176009 scopus 로고    scopus 로고
    • Overcoming a barrier for DNA polymerization in triplex-forming sequences
    • Potaman,V.N. and Bissler,J.J. (1999) Overcoming a barrier for DNA polymerization in triplex-forming sequences. Nucleic Acids Res., 27, e5.
    • (1999) Nucleic Acids Res. , vol.27
    • Potaman, V.N.1    Bissler, J.J.2
  • 49
    • 0028631012 scopus 로고
    • Exclusion of RNA strands from a purine motif triple helix
    • Semerad,C.L. and Maher,L.J.,III (1994) Exclusion of RNA strands from a purine motif triple helix. Nucleic Acids Res., 22, 5321-5325.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 5321-5325
    • Semerad, C.L.1    Maher III, L.J.2
  • 50
    • 0025155066 scopus 로고
    • n tracts can form intramolecular triplexes under superhelical stress
    • n tracts can form intramolecular triplexes under superhelical stress. Nucleic Acids Res., 18, 5387-5391.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 5387-5391
    • Fox, K.R.1
  • 52
    • 0025314802 scopus 로고
    • DNA-sequence and metal-ion specificity of the formation of *H-DNA
    • Bernues,J., Beltran,R., Casasnovas,J.M. and Azorin,F. (1990) DNA-sequence and metal-ion specificity of the formation of *H-DNA. Nucleic Acids Res., 18, 4067-4073.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 4067-4073
    • Bernues, J.1    Beltran, R.2    Casasnovas, J.M.3    Azorin, F.4
  • 53
    • 0026419949 scopus 로고
    • Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli
    • Trinh,T.Q. and Sinden,R.R. (1991) Preferential DNA secondary structure mutagenesis in the lagging strand of replication in E. coli. Nature, 352, 544-547.
    • (1991) Nature , vol.352 , pp. 544-547
    • Trinh, T.Q.1    Sinden, R.R.2
  • 54
    • 0027014233 scopus 로고
    • DNA structure, mutations and human genetic disease
    • Sinden,R.R. and Wells,R.D. (1992) DNA structure, mutations and human genetic disease. Curr. Opin. Biotechnol., 3, 612-622.
    • (1992) Curr. Opin. Biotechnol. , vol.3 , pp. 612-622
    • Sinden, R.R.1    Wells, R.D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.