Stochastic model of protein-protein interaction: Why signaling proteins need to be colocalized

Proceedings of the National Academy of Sciences of the United States of America

Volumn 101, Issue 17, 2004, Pages 6445-6449

  Batada, Nizar N ^a   Shepp, Larry A ^b   Siegmund, David O ^a  

^a STANFORD UNIVERSITY   (United States)

^b RUTGERS UNIVERSITY   (United States)

Author keywords

Intracellular reaction; Protein diffusion; Protein localization; Protein mobility

Indexed keywords

MESSENGER RNA; PROTEIN;

ARTICLE; CELL COMPARTMENTALIZATION; CYTOPLASM; DIFFUSION; EUKARYOTIC CELL; MOLECULAR INTERACTION; OOCYTE; PRIORITY JOURNAL; PROTEIN DEGRADATION; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN PROTEIN INTERACTION; REACTION TIME; SIGNAL TRANSDUCTION; STOCHASTIC MODEL;

MODELS, MOLECULAR; PROTEINS;

EUKARYOTA;

EID: 2342469914     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0401314101     Document Type: Article

References (26)

1. Scott, J. D. & Pawson, T. (2000) Sci. Am. 282 (6), 72-79.
2. Holstege, F. C., Jennings, E. G., Wyrick, J. J., Lee, T. I., Hengartner, C. J., Green, M. R., Golub, T. R., Lander, E. S. & Young, R. A. (1998) Cell 95, 717-728.
3. Velculescu, V. E., Madden, S. L., Zhang, L., Lash, A. E., Yu, J., Rago, C., Lal, A., Wang, C. J., Beaudry, G. A., Ciriello, K. M., et al. (1999) Nat. Genet. 23, 387-388.
4. Blake, W. J., Ern, M. K. A., Cantor, C. R. & Collins, J. J. (2003) Nature 422, 633-637.
5. Varshavsky, A. (1996) Proc. Natl. Acad. Sci. USA 93, 12142-12149.
6. Ghaemmaghami, S., Huh, W.-K., Bower, K., Howson, R. W., Belle, A., Dephoure, N., O'Shea, E. K. & Weissman, J. S. (2003) Nature 425, 737-741.
7. Garrington, T. P. & Johnson, G. L. (1999) Curr. Opin. Cell Biol. 11, 211-218.
8. Pawson, T. & Scott, J. D. (1997) Science 278, 2075-2080.
9. Johnstone, O. & Lasko, P. (2001) Annu. Rev. Genet. 35, 365-406.
10. Kloc, M., Bilinski, S., Chan, A. P., Allen, L. H., Zearfoss, N. R. & Etkin, L. D. (2001) Int. Rev. Cytol. 203, 63-91.
11. Huh, W.-K., Falvo, J. V., Gerke, L. C., Carroll, A. S., Howson, R. W., Weissman, J. S. & O'Shea, E. K. (2003) Nature 425, 686-691.
12. Alberts, B., Johnson, A., Lewis, J., Raff, M., Roberts, K. & Walter, P. (2002) Molecular Biology of the Cell (Garland Science, New York).
13. Fusco, D., Accornero, N., Lavoie, B., Shenoy, S. M., Blanchard, J. M., Singer, R. H. & Bertrand, E. (2003) Curr. Biol. 13, 161-167.
14. Lipshitz, H. D. & Smibert, C. A. (2000) Curr. Opin. Genet. Dev. 10, 476-488.
15. Karlin, S. & Taylor, H. M. (1975) A First Course in Stochastic Process (Academic, New York), 2nd Ed.
16. Ito, K. & McKean, H. P. (1996) Diffusion Processes and Their Simple Paths (Academic, New York).
17. Santalo, L. (1976) Integral Geometry and Geometric Probability (Addison-Wesley, Reading, MA).
18. Dayel, M. J., Hom, E. F. & Verkman, A. S. (1999) Biophys. J. 76, 2843-2851.
19. Gershon, N. D., Porter, K. R. & Trus, B. L. (1985) Proc. Natl. Acad. Sci. USA 82, 5030-5034.
20. Jacobson, K. & Wojcieszyn, J. (1984) Proc. Natl. Acad. Sci. USA 81, 6747-6751.
21. Bray, D. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 59-75.
22. Goodsell, D. S. (1998) The Machinery of Life (Springer, New York).
23. Weijer, C. J. (2003) Science 300, 96-100.
24. Teruel, M. N. & Meyer, T. (2000) Cell 103, 181-184.
25. Burack, W. R. & Shaw, A. S. (2000) Curr. Opin. Cell Biol. 12, 211-216.
26. Abramowitz, M. & Stegun, I. A., eds. (1970) Handbook of Mathematical Functions with Formulas, Graphs, and Mathematical Table (Dover, New York).